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Items: 1 to 50 of 190

1.

The European Virus Archive goes global: A growing resource for research.

Romette JL, Prat CM, Gould EA, de Lamballerie X, Charrel R, Coutard B, Fooks AR, Bardsley M, Carroll M, Drosten C, Drexler JF, Günther S, Klempa B, Pinschewer D, Klimkait T, Avsic-Zupanc T, Capobianchi MR, Dicaro A, Ippolito G, Nitsche A, Koopmans M, Reusken C, Gorbalenya A, Raoul H, Bourhy H, Mettenleiter T, Reiche S, Batten C, Sabeta C, Paweska JT, Eropkin M, Zverev V, Hu Z, Mac Cullough S, Mirazimi A, Pradel F, Lieutaud P.

Antiviral Res. 2018 Oct;158:127-134. doi: 10.1016/j.antiviral.2018.07.017. Epub 2018 Jul 29. Review.

2.

Beyond the myths: Novel findings for old paradigms in the history of the smallpox vaccine.

Esparza J, Nitsche A, Damaso CR.

PLoS Pathog. 2018 Jul 26;14(7):e1007082. doi: 10.1371/journal.ppat.1007082. eCollection 2018 Jul. No abstract available.

3.

Need for additional capacity and improved capability for molecular detection of yellow fever virus in European Expert Laboratories: External Quality Assessment, March 2018.

Domingo C, Ellerbrok H, Koopmans M, Nitsche A, Leitmeyer K, Charrel RN, Reusken CBEM.

Euro Surveill. 2018 Jul;23(28). doi: 10.2807/1560-7917.ES.2018.23.28.1800341.

4.

LiveKraken - Real-time metagenomic classification of Illumina data.

Tausch SH, Strauch B, Andrusch A, Loka TP, Lindner MS, Nitsche A, Renard BY.

Bioinformatics. 2018 Jun 1. doi: 10.1093/bioinformatics/bty433. [Epub ahead of print]

PMID:
29868852
5.

A metagenomic survey identifies Tamdy orthonairovirus as well as divergent phlebo-, rhabdo-, chu- and flavi-like viruses in Anatolia, Turkey.

Brinkmann A, Dinçer E, Polat C, Hekimoğlu O, Hacıoğlu S, Földes K, Özkul A, Öktem İMA, Nitsche A, Ergünay K.

Ticks Tick Borne Dis. 2018 Jul;9(5):1173-1183. doi: 10.1016/j.ttbdis.2018.04.017. Epub 2018 Apr 27.

PMID:
29728337
6.

PriLive: privacy-preserving real-time filtering for next-generation sequencing.

Loka TP, Tausch SH, Dabrowski PW, Radonic A, Nitsche A, Renard BY.

Bioinformatics. 2018 Jul 15;34(14):2376-2383. doi: 10.1093/bioinformatics/bty128.

PMID:
29522157
7.

Global ubiquitination analysis reveals extensive modification and proteasomal degradation of cowpox virus proteins, but preservation of viral cores.

Grossegesse M, Doellinger J, Fritsch A, Laue M, Piesker J, Schaade L, Nitsche A.

Sci Rep. 2018 Jan 29;8(1):1807. doi: 10.1038/s41598-018-20130-9.

8.

A novel three-dimensional cell culture method enhances antiviral drug screening in primary human cells.

Koban R, Neumann M, Daugs A, Bloch O, Nitsche A, Langhammer S, Ellerbrok H.

Antiviral Res. 2018 Feb;150:20-29. doi: 10.1016/j.antiviral.2017.12.005. Epub 2017 Dec 7.

PMID:
29224735
9.

DMSO as a mobile phase additive enhances detection of ubiquitination sites by nano-LC-ESI-MS/MS.

Doellinger J, Grossegesse M, Nitsche A, Lasch P.

J Mass Spectrom. 2018 Feb;53(2):183-187. doi: 10.1002/jms.4049.

PMID:
29193534
10.

Development and preliminary evaluation of a multiplexed amplification and next generation sequencing method for viral hemorrhagic fever diagnostics.

Brinkmann A, Ergünay K, Radonić A, Kocak Tufan Z, Domingo C, Nitsche A.

PLoS Negl Trop Dis. 2017 Nov 20;11(11):e0006075. doi: 10.1371/journal.pntd.0006075. eCollection 2017 Nov.

11.

Equination (inoculation of horsepox): An early alternative to vaccination (inoculation of cowpox) and the potential role of horsepox virus in the origin of the smallpox vaccine.

Esparza J, Schrick L, Damaso CR, Nitsche A.

Vaccine. 2017 Dec 19;35(52):7222-7230. doi: 10.1016/j.vaccine.2017.11.003. Epub 2017 Nov 11. Review.

12.

West Nile virus, Anopheles flavivirus, a novel flavivirus as well as Merida-like rhabdovirus Turkey in field-collected mosquitoes from Thrace and Anatolia.

Öncü C, Brinkmann A, Günay F, Kar S, Öter K, Sarıkaya Y, Nitsche A, Linton YM, Alten B, Ergünay K.

Infect Genet Evol. 2018 Jan;57:36-45. doi: 10.1016/j.meegid.2017.11.003. Epub 2017 Nov 8.

PMID:
29128516
13.

Combined Proteomics/Genomics Approach Reveals Proteomic Changes of Mature Virions as a Novel Poxvirus Adaptation Mechanism.

Grossegesse M, Doellinger J, Tyshaieva A, Schaade L, Nitsche A.

Viruses. 2017 Nov 10;9(11). pii: E337. doi: 10.3390/v9110337.

14.

Seasonal recurrence of cowpox virus outbreaks in captive cheetahs (Acinonyx jubatus).

Stagegaard J, Kurth A, Stern D, Dabrowski PW, Pocknell A, Nitsche A, Schrick L.

PLoS One. 2017 Nov 9;12(11):e0187089. doi: 10.1371/journal.pone.0187089. eCollection 2017.

15.

Phenotypic and genotypic aspects of Townes-Brock syndrome: case report of patient in southern Brazil with a new SALL1 hotspot region nonsense mutation.

Liberalesso PBN, Cordeiro ML, Karuta SCV, Koladicz KRJ, Nitsche A, Zeigelboim BS, Raskin S, Rauchman M.

BMC Med Genet. 2017 Nov 6;18(1):125. doi: 10.1186/s12881-017-0483-7.

16.

A Next-Generation Sequencing Approach Uncovers Viral Transcripts Incorporated in Poxvirus Virions.

Grossegesse M, Doellinger J, Haldemann B, Schaade L, Nitsche A.

Viruses. 2017 Oct 13;9(10). pii: E296. doi: 10.3390/v9100296.

17.

An Early American Smallpox Vaccine Based on Horsepox.

Schrick L, Tausch SH, Dabrowski PW, Damaso CR, Esparza J, Nitsche A.

N Engl J Med. 2017 Oct 12;377(15):1491-1492. doi: 10.1056/NEJMc1707600. No abstract available.

18.

Use of RNALater® Preservation for Virome Sequencing in Outbreak Settings.

Kohl C, Wegener M, Nitsche A, Kurth A.

Front Microbiol. 2017 Sep 26;8:1888. doi: 10.3389/fmicb.2017.01888. eCollection 2017.

19.

A Cross-Sectional Serosurvey of Anti-Orthopoxvirus Antibodies in Central and Western Africa.

Leendertz SAJ, Stern D, Theophil D, Anoh E, Mossoun A, Schubert G, Wiersma L, Akoua-Koffi C, Couacy-Hymann E, Muyembe-Tamfum JJ, Karhemere S, Pauly M, Schrick L, Leendertz FH, Nitsche A.

Viruses. 2017 Sep 29;9(10). pii: E278. doi: 10.3390/v9100278.

20.

Berlin Squirrelpox Virus, a New Poxvirus in Red Squirrels, Berlin, Germany.

Wibbelt G, Tausch SH, Dabrowski PW, Kershaw O, Nitsche A, Schrick L.

Emerg Infect Dis. 2017 Oct;23(10):1726-1729. doi: 10.3201/eid2310.171008.

21.

Generic amplification and next generation sequencing reveal Crimean-Congo hemorrhagic fever virus AP92-like strain and distinct tick phleboviruses in Anatolia, Turkey.

Dinçer E, Brinkmann A, Hekimoğlu O, Hacıoğlu S, Földes K, Karapınar Z, Polat PF, Oğuz B, Orunç Kılınç Ö, Hagedorn P, Özer N, Özkul A, Nitsche A, Ergünay K.

Parasit Vectors. 2017 Jul 14;10(1):335. doi: 10.1186/s13071-017-2279-1.

22.

Comparing Viral Metagenomic Extraction Methods.

Klenner J, Kohl C, Dabrowski PW, Nitsche A.

Curr Issues Mol Biol. 2017;24:59-70. doi: 10.21775/cimb.024.059. Epub 2017 Jul 6.

PMID:
28686568
23.

Generalised cowpox virus infection.

Grönemeyer LL, Baltzer A, Broekaert S, Schrick L, Möller L, Nitsche A, Mössner R, Schön MP, Buhl T.

Lancet. 2017 Oct 14;390(10104):1769. doi: 10.1016/S0140-6736(17)31428-9. Epub 2017 Jun 29. No abstract available.

PMID:
28669644
24.

Co-circulation of West Nile virus and distinct insect-specific flaviviruses in Turkey.

Ergünay K, Litzba N, Brinkmann A, Günay F, Sarıkaya Y, Kar S, Örsten S, Öter K, Domingo C, Erisoz Kasap Ö, Özkul A, Mitchell L, Nitsche A, Alten B, Linton YM.

Parasit Vectors. 2017 Mar 20;10(1):149. doi: 10.1186/s13071-017-2087-7.

25.

A novel rhabdovirus, related to Merida virus, in field-collected mosquitoes from Anatolia and Thrace.

Ergünay K, Brinkmann A, Litzba N, Günay F, Kar S, Öter K, Örsten S, Sarıkaya Y, Alten B, Nitsche A, Linton YM.

Arch Virol. 2017 Jul;162(7):1903-1911. doi: 10.1007/s00705-017-3314-4. Epub 2017 Mar 10.

PMID:
28283817
26.

Rapid and sensitive point-of-care detection of Orthopoxviruses by ABICAP immunofiltration.

Stern D, Olson VA, Smith SK, Pietraszczyk M, Miller L, Miethe P, Dorner BG, Nitsche A.

Virol J. 2016 Dec 9;13(1):207.

27.

Isolation and genomic characterization of Culex theileri flaviviruses in field-collected mosquitoes from Turkey.

Ergünay K, Litzba N, Brinkmann A, Günay F, Kar S, Öter K, Örsten S, Sarıkaya Y, Alten B, Nitsche A, Linton YM.

Infect Genet Evol. 2016 Dec;46:138-147. doi: 10.1016/j.meegid.2016.11.008. Epub 2016 Nov 10.

PMID:
27840255
28.

HiLive: real-time mapping of illumina reads while sequencing.

Lindner MS, Strauch B, Schulze JM, Tausch SH, Dabrowski PW, Nitsche A, Renard BY.

Bioinformatics. 2017 Mar 15;33(6):917-319. doi: 10.1093/bioinformatics/btw659.

PMID:
27794555
29.

[On-site detection of bioterrorism-relevant agents : Rapid detection methods for viruses, bacteria and toxins - capabilities and limitations].

Stern D, Richter M, Schrick L, Lasch P, Keeren K, Polleichtner A, Lemmer K, Nitsche A, Grunow R, Herzog C, Dorner BG, Schaade L.

Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2016 Dec;59(12):1577-1586. Review. German.

PMID:
27778086
30.

Viral Metagenomics on Blood-Feeding Arthropods as a Tool for Human Disease Surveillance.

Brinkmann A, Nitsche A, Kohl C.

Int J Mol Sci. 2016 Oct 19;17(10). pii: E1743. Review.

31.

Analysis of Diagnostic Findings From the European Mobile Laboratory in Guéckédou, Guinea, March 2014 Through March 2015.

Kerber R, Krumkamp R, Diallo B, Jaeger A, Rudolf M, Lanini S, Bore JA, Koundouno FR, Becker-Ziaja B, Fleischmann E, Stoecker K, Meschi S, Mély S, Newman EN, Carletti F, Portmann J, Korva M, Wolff S, Molkenthin P, Kis Z, Kelterbaum A, Bocquin A, Strecker T, Fizet A, Castilletti C, Schudt G, Ottowell L, Kurth A, Atkinson B, Badusche M, Cannas A, Pallasch E, Bosworth A, Yue C, Pályi B, Ellerbrok H, Kohl C, Oestereich L, Logue CH, Lüdtke A, Richter M, Ngabo D, Borremans B, Becker D, Gryseels S, Abdellati S, Vermoesen T, Kuisma E, Kraus A, Liedigk B, Maes P, Thom R, Duraffour S, Diederich S, Hinzmann J, Afrough B, Repits J, Mertens M, Vitoriano I, Bah A, Sachse A, Boettcher JP, Wurr S, Bockholt S, Nitsche A, Županc TA, Strasser M, Ippolito G, Becker S, Raoul H, Carroll MW, De Clerck H, Van Herp M, Sprecher A, Koivogui L, Magassouba N, Keïta S, Drury P, Gurry C, Formenty P, May J, Gabriel M, Wölfel R, Günther S, Di Caro A.

J Infect Dis. 2016 Oct 15;214(suppl 3):S250-S257. Epub 2016 Sep 16.

32.

Highly Efficient Multivalent 2D Nanosystems for Inhibition of Orthopoxvirus Particles.

Ziem B, Thien H, Achazi K, Yue C, Stern D, Silberreis K, Gholami MF, Beckert F, Gröger D, Mülhaupt R, Rabe JP, Nitsche A, Haag R.

Adv Healthc Mater. 2016 Nov;5(22):2922-2930. doi: 10.1002/adhm.201600812. Epub 2016 Sep 1.

PMID:
27581958
33.

Evolutionary clues in lncRNAs.

Nitsche A, Stadler PF.

Wiley Interdiscip Rev RNA. 2017 Jan;8(1). doi: 10.1002/wrna.1376. Epub 2016 Jul 19. Review.

PMID:
27436689
34.

The contribution of the European high containment laboratories during the 2014-2015 Ebola Virus Disease emergency.

Nisii C, Vincenti D, Fusco FM, Schmidt-Chanasit J, Carbonnelle C, Raoul H, Eickmann M, Hewson R, Brave A, Nuncio S, Sanchez-Seco MP, Palyi B, Kis Z, Zange S, Nitsche A, Kurth A, Strasser M, Capobianchi MR, Ozin A, Guglielmetti P, Menel-Lemos C, Jacob D, Grunow R, Ippolito G, Di Caro A.

Clin Microbiol Infect. 2017 Feb;23(2):58-60. doi: 10.1016/j.cmi.2016.07.003. Epub 2016 Jul 9. No abstract available.

35.

In vivo evidence for ribavirin-induced mutagenesis of the hepatitis E virus genome.

Todt D, Gisa A, Radonic A, Nitsche A, Behrendt P, Suneetha PV, Pischke S, Bremer B, Brown RJ, Manns MP, Cornberg M, Bock CT, Steinmann E, Wedemeyer H.

Gut. 2016 Oct;65(10):1733-43. doi: 10.1136/gutjnl-2015-311000. Epub 2016 May 24.

36.

Pitfalls in PCR troubleshooting: Expect the unexpected?

Schrick L, Nitsche A.

Biomol Detect Quantif. 2015 Dec 10;6:1-3. doi: 10.1016/j.bdq.2015.11.001. eCollection 2016 Jan.

37.

Infection of human airway epithelial cells by different subtypes of Dobrava-Belgrade virus reveals gene expression patterns corresponding to their virulence potential.

Witkowski PT, Bourquain D, Bankov K, Auste B, Dabrowski PW, Nitsche A, Krüger DH, Schaade L.

Virology. 2016 Jun;493:189-201. doi: 10.1016/j.virol.2016.03.018. Epub 2016 Apr 6.

38.

Rapid characterisation of Klebsiella oxytoca isolates from contaminated liquid hand soap using mass spectrometry, FTIR and Raman spectroscopy.

Dieckmann R, Hammerl JA, Hahmann H, Wicke A, Kleta S, Dabrowski PW, Nitsche A, Stämmler M, Al Dahouk S, Lasch P.

Faraday Discuss. 2016 Jun 23;187:353-75. doi: 10.1039/c5fd00165j.

PMID:
27053001
39.

Development of a Genus-Specific Antigen Capture ELISA for Orthopoxviruses - Target Selection and Optimized Screening.

Stern D, Pauly D, Zydek M, Miller L, Piesker J, Laue M, Lisdat F, Dorner MB, Dorner BG, Nitsche A.

PLoS One. 2016 Mar 1;11(3):e0150110. doi: 10.1371/journal.pone.0150110. eCollection 2016.

40.

Comparison of the Cowpox Virus and Vaccinia Virus Mature Virion Proteome: Analysis of the Species- and Strain-Specific Proteome.

Doellinger J, Schaade L, Nitsche A.

PLoS One. 2015 Nov 10;10(11):e0141527. doi: 10.1371/journal.pone.0141527. eCollection 2015.

41.

Comparison of 454 Ultra-Deep Sequencing and Allele-Specific Real-Time PCR with Regard to the Detection of Emerging Drug-Resistant Minor HIV-1 Variants after Antiretroviral Prophylaxis for Vertical Transmission.

Hauser A, Kuecherer C, Kunz A, Dabrowski PW, Radonić A, Nitsche A, Theuring S, Bannert N, Sewangi J, Mbezi P, Dugange F, Harms G, Meixenberger K.

PLoS One. 2015 Oct 15;10(10):e0140809. doi: 10.1371/journal.pone.0140809. eCollection 2015.

42.

Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences.

Steglich M, Nitsche A, von Müller L, Herrmann M, Kohl TA, Niemann S, Nübel U.

PLoS One. 2015 Oct 7;10(10):e0139811. doi: 10.1371/journal.pone.0139811. eCollection 2015.

43.

First Draft Genome Sequence of Balamuthia mandrillaris, the Causative Agent of Amoebic Encephalitis.

Detering H, Aebischer T, Dabrowski PW, Radonić A, Nitsche A, Renard BY, Kiderlen AF.

Genome Announc. 2015 Sep 24;3(5). pii: e01013-15. doi: 10.1128/genomeA.01013-15.

44.

Cowpox after a cat scratch - case report from Poland.

Świtaj K, Kajfasz P, Kurth A, Nitsche A.

Ann Agric Environ Med. 2015;22(3):456-8. doi: 10.5604/12321966.1167713.

45.

RAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data.

Tausch SH, Renard BY, Nitsche A, Dabrowski PW.

PLoS One. 2015 Sep 17;10(9):e0137896. doi: 10.1371/journal.pone.0137896. eCollection 2015.

46.

Genomic Analysis, Phenotype, and Virulence of the Historical Brazilian Smallpox Vaccine Strain IOC: Implications for the Origins and Evolutionary Relationships of Vaccinia Virus.

Medaglia ML, Moussatché N, Nitsche A, Dabrowski PW, Li Y, Damon IK, Lucas CG, Arruda LB, Damaso CR.

J Virol. 2015 Dec;89(23):11909-25. doi: 10.1128/JVI.01833-15. Epub 2015 Sep 16.

47.

Third Report on Chicken Genes and Chromosomes 2015.

Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RP, Damas J, Davis RV, de Koning DJ, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MA, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux PF, Schmidt CJ, Schneider AS, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JM, Wragg D, Zhou H.

Cytogenet Genome Res. 2015;145(2):78-179. doi: 10.1159/000430927. Epub 2015 Jul 14. No abstract available.

48.

Microvascular responses to (hyper-)gravitational stress by short-arm human centrifuge: arteriolar vasoconstriction and venous pooling.

Habazettl H, Stahn A, Nitsche A, Nordine M, Pries AR, Gunga HC, Opatz O.

Eur J Appl Physiol. 2016 Jan;116(1):57-65. doi: 10.1007/s00421-015-3241-6. Epub 2015 Aug 18.

PMID:
26280651
49.

SuRankCo: supervised ranking of contigs in de novo assemblies.

Kuhring M, Dabrowski PW, Piro VC, Nitsche A, Renard BY.

BMC Bioinformatics. 2015 Jul 30;16:240. doi: 10.1186/s12859-015-0644-7.

50.

Rat cytomegalovirus (RCMV) English isolate and a newly identified Berlin isolate share similarities with but are separate as an anciently diverged clade from Mouse CMV and the Maastricht isolate of RCMV.

Geyer H, Ettinger J, Möller L, Schmolz E, Nitsche A, Brune W, Heaggans S, Sandford GR, Hayward GS, Voigt S.

J Gen Virol. 2015 Jul;96(Pt 7):1873-0. doi: 10.1099/vir.0.000109.

PMID:
26209537

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