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Items: 20

1.

De novo assembly and annotation of Hyalomma dromedarii tick (Acari: Ixodidae) sialotranscriptome with regard to gender differences in gene expression.

Bensaoud C, Nishiyama MY Jr, Ben Hamda C, Lichtenstein F, Castro de Oliveira U, Faria F, Loiola Meirelles Junqueira-de-Azevedo I, Ghedira K, Bouattour A, M'Ghirbi Y, Chudzinski-Tavassi AM.

Parasit Vectors. 2018 May 24;11(1):314. doi: 10.1186/s13071-018-2874-9.

2.

Proteomic endorsed transcriptomic profiles of venom glands from Tityus obscurus and T. serrulatus scorpions.

de Oliveira UC, Nishiyama MY Jr, Dos Santos MBV, Santos-da-Silva AP, Chalkidis HM, Souza-Imberg A, Candido DM, Yamanouye N, Dorce VAC, Junqueira-de-Azevedo ILM.

PLoS One. 2018 Mar 21;13(3):e0193739. doi: 10.1371/journal.pone.0193739. eCollection 2018.

3.

Functional proteomic analyses of Bothrops atrox venom reveals phenotypes associated with habitat variation in the Amazon.

Sousa LF, Portes-Junior JA, Nicolau CA, Bernardoni JL, Nishiyama MY Jr, Amazonas DR, Freitas-de-Sousa LA, Mourão RH, Chalkidis HM, Valente RH, Moura-da-Silva AM.

J Proteomics. 2017 Apr 21;159:32-46. doi: 10.1016/j.jprot.2017.03.003. Epub 2017 Mar 6.

PMID:
28274896
4.

Peptidomics of Acanthoscurria gomesiana spider venom reveals new toxins with potential antimicrobial activity.

Abreu TF, Sumitomo BN, Nishiyama MY Jr, Oliveira UC, Souza GH, Kitano ES, Zelanis A, Serrano SM, Junqueira-de-Azevedo I, Silva PI Jr, Tashima AK.

J Proteomics. 2017 Jan 16;151:232-242. doi: 10.1016/j.jprot.2016.07.012. Epub 2016 Jul 17.

PMID:
27436114
5.

Comparison of venoms from wild and long-term captive Bothrops atrox snakes and characterization of Batroxrhagin, the predominant class PIII metalloproteinase from the venom of this species.

Freitas-de-Sousa LA, Amazonas DR, Sousa LF, Sant'Anna SS, Nishiyama MY Jr, Serrano SM, Junqueira-de-Azevedo IL, Chalkidis HM, Moura-da-Silva AM, Mourão RH.

Biochimie. 2015 Nov;118:60-70. doi: 10.1016/j.biochi.2015.08.006. Epub 2015 Aug 12.

6.

Whole-Genome Sequence of a Bordetella pertussis Brazilian Vaccine Strain.

Akamatsu MA, Nishiyama MY Jr, Morone M, Oliveira UC, Bezerra MF, Sakauchi MA, Raw I, Junqueira de Azevedo IL, Kitajima JP, Carvalho E, Ho PL.

Genome Announc. 2015 Feb 19;3(1). pii: e01570-14. doi: 10.1128/genomeA.01570-14.

7.

Full-length enriched cDNA libraries and ORFeome analysis of sugarcane hybrid and ancestor genotypes.

Nishiyama MY Jr, Ferreira SS, Tang PZ, Becker S, Pörtner-Taliana A, Souza GM.

PLoS One. 2014 Sep 15;9(9):e107351. doi: 10.1371/journal.pone.0107351. eCollection 2014.

8.

Building the sugarcane genome for biotechnology and identifying evolutionary trends.

de Setta N, Monteiro-Vitorello CB, Metcalfe CJ, Cruz GM, Del Bem LE, Vicentini R, Nogueira FT, Campos RA, Nunes SL, Turrini PC, Vieira AP, Ochoa Cruz EA, Corrêa TC, Hotta CT, de Mello Varani A, Vautrin S, da Trindade AS, de Mendonça Vilela M, Lembke CG, Sato PM, de Andrade RF, Nishiyama MY Jr, Cardoso-Silva CB, Scortecci KC, Garcia AA, Carneiro MS, Kim C, Paterson AH, Bergès H, D'Hont A, de Souza AP, Souza GM, Vincentz M, Kitajima JP, Van Sluys MA.

BMC Genomics. 2014 Jun 30;15:540. doi: 10.1186/1471-2164-15-540.

9.

Natural blood feeding and temperature shift modulate the global transcriptional profile of Rickettsia rickettsii infecting its tick vector.

Galletti MF, Fujita A, Nishiyama MY Jr, Malossi CD, Pinter A, Soares JF, Daffre S, Labruna MB, Fogaça AC.

PLoS One. 2013 Oct 14;8(10):e77388. doi: 10.1371/journal.pone.0077388. eCollection 2013.

10.

Circadian rhythms of sense and antisense transcription in sugarcane, a highly polyploid crop.

Hotta CT, Nishiyama MY Jr, Souza GM.

PLoS One. 2013 Aug 6;8(8):e71847. doi: 10.1371/journal.pone.0071847. Print 2013.

11.

Biofuel and energy crops: high-yield Saccharinae take center stage in the post-genomics era.

de Siqueira Ferreira S, Nishiyama MY Jr, Paterson AH, Souza GM.

Genome Biol. 2013 Jun 27;14(6):210. doi: 10.1186/gb-2013-14-6-210. Review.

12.

Identification of sense and antisense transcripts regulated by drought in sugarcane.

Lembke CG, Nishiyama MY Jr, Sato PM, de Andrade RF, Souza GM.

Plant Mol Biol. 2012 Jul;79(4-5):461-77. doi: 10.1007/s11103-012-9922-1. Epub 2012 May 19.

13.

Screening the Schistosoma mansoni transcriptome for genes differentially expressed in the schistosomulum stage in search for vaccine candidates.

Farias LP, Tararam CA, Miyasato PA, Nishiyama MY Jr, Oliveira KC, Kawano T, Verjovski-Almeida S, Leite LC.

Parasitol Res. 2011 Jan;108(1):123-35. doi: 10.1007/s00436-010-2045-1. Epub 2010 Sep 18.

PMID:
20852890
14.

Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii.

Moreira LM, Almeida NF Jr, Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE, de Oliveira JC, de Souza RF, Facincani AP, Ferraz AL, Ferro MI, Furlan LR, Gimenez DF, Jones JB, Kitajima EW, Laia ML, Leite RP Jr, Nishiyama MY, Rodrigues Neto J, Nociti LA, Norman DJ, Ostroski EH, Pereira HA Jr, Staskawicz BJ, Tezza RI, Ferro JA, Vinatzer BA, Setubal JC.

BMC Genomics. 2010 Apr 13;11:238. doi: 10.1186/1471-2164-11-238.

15.

Sugarcane genes associated with sucrose content.

Papini-Terzi FS, Rocha FR, Vêncio RZ, Felix JM, Branco DS, Waclawovsky AJ, Del Bem LE, Lembke CG, Costa MD, Nishiyama MY Jr, Vicentini R, Vincentz MG, Ulian EC, Menossi M, Souza GM.

BMC Genomics. 2009 Mar 21;10:120. doi: 10.1186/1471-2164-10-120.

16.

GRASSIUS: a platform for comparative regulatory genomics across the grasses.

Yilmaz A, Nishiyama MY Jr, Fuentes BG, Souza GM, Janies D, Gray J, Grotewold E.

Plant Physiol. 2009 Jan;149(1):171-80. doi: 10.1104/pp.108.128579. Epub 2008 Nov 5.

17.

Elevated CO2 increases photosynthesis, biomass and productivity, and modifies gene expression in sugarcane.

De Souza AP, Gaspar M, Da Silva EA, Ulian EC, Waclawovsky AJ, Nishiyama MY Jr, Dos Santos RV, Teixeira MM, Souza GM, Buckeridge MS.

Plant Cell Environ. 2008 Aug;31(8):1116-27. doi: 10.1111/j.1365-3040.2008.01822.x. Epub 2008 Apr 21.

18.

Signal transduction-related responses to phytohormones and environmental challenges in sugarcane.

Rocha FR, Papini-Terzi FS, Nishiyama MY Jr, Vêncio RZ, Vicentini R, Duarte RD, de Rosa VE Jr, Vinagre F, Barsalobres C, Medeiros AH, Rodrigues FA, Ulian EC, Zingaretti SM, Galbiatti JA, Almeida RS, Figueira AV, Hemerly AS, Silva-Filho MC, Menossi M, Souza GM.

BMC Genomics. 2007 Mar 13;8:71.

19.

Lachesis muta (Viperidae) cDNAs reveal diverging pit viper molecules and scaffolds typical of cobra (Elapidae) venoms: implications for snake toxin repertoire evolution.

Junqueira-de-Azevedo IL, Ching AT, Carvalho E, Faria F, Nishiyama MY Jr, Ho PL, Diniz MR.

Genetics. 2006 Jun;173(2):877-89. Epub 2006 Apr 2.

20.

Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni.

Verjovski-Almeida S, DeMarco R, Martins EA, Guimarães PE, Ojopi EP, Paquola AC, Piazza JP, Nishiyama MY Jr, Kitajima JP, Adamson RE, Ashton PD, Bonaldo MF, Coulson PS, Dillon GP, Farias LP, Gregorio SP, Ho PL, Leite RA, Malaquias LC, Marques RC, Miyasato PA, Nascimento AL, Ohlweiler FP, Reis EM, Ribeiro MA, Sá RG, Stukart GC, Soares MB, Gargioni C, Kawano T, Rodrigues V, Madeira AM, Wilson RA, Menck CF, Setubal JC, Leite LC, Dias-Neto E.

Nat Genet. 2003 Oct;35(2):148-57. Epub 2003 Sep 14.

PMID:
12973350

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