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Items: 1 to 50 of 63

1.

An Evolutionarily Conserved Abscisic Acid Signaling Pathway Regulates Dormancy in the Liverwort Marchantia polymorpha.

Eklund DM, Kanei M, Flores-Sandoval E, Ishizaki K, Nishihama R, Kohchi T, Lagercrantz U, Bhalerao RP, Sakata Y, Bowman JL.

Curr Biol. 2018 Nov 19;28(22):3691-3699.e3. doi: 10.1016/j.cub.2018.10.018. Epub 2018 Nov 8.

PMID:
30416060
2.

Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha.

Sugano SS, Nishihama R, Shirakawa M, Takagi J, Matsuda Y, Ishida S, Shimada T, Hara-Nishimura I, Osakabe K, Kohchi T.

PLoS One. 2018 Oct 31;13(10):e0205117. doi: 10.1371/journal.pone.0205117. eCollection 2018.

3.

Novel gateway binary vectors for rapid tripartite DNA assembly and promoter analysis with various reporters and tags in the liverwort Marchantia polymorpha.

Mano S, Nishihama R, Ishida S, Hikino K, Kondo M, Nishimura M, Yamato KT, Kohchi T, Nakagawa T.

PLoS One. 2018 Oct 4;13(10):e0204964. doi: 10.1371/journal.pone.0204964. eCollection 2018.

4.

ANGUSTIFOLIA contributes to the regulation of three-dimensional morphogenesis in the liverwort Marchantia polymorpha.

Furuya T, Hattori K, Kimori Y, Ishida S, Nishihama R, Kohchi T, Tsukaya H.

Development. 2018 Sep 20;145(18). pii: dev161398. doi: 10.1242/dev.161398.

PMID:
30126903
5.

Loss of CG methylation in Marchantia polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation.

Ikeda Y, Nishihama R, Yamaoka S, Arteaga-Vazquez MA, Aguilar-Cruz A, Grimanelli D, Pogorelcnik R, Martienssen RA, Yamato KT, Kohchi T, Hirayama T, Mathieu O.

Plant Cell Physiol. 2018 Aug 9. doi: 10.1093/pcp/pcy161. [Epub ahead of print]

PMID:
30102384
6.

Identification and Biochemical Characterization of the Serine Biosynthetic Enzyme 3-Phosphoglycerate Dehydrogenase in Marchantia polymorpha.

Akashi H, Okamura E, Nishihama R, Kohchi T, Hirai MY.

Front Plant Sci. 2018 Jul 16;9:956. doi: 10.3389/fpls.2018.00956. eCollection 2018.

7.

CRISPR/Cas9-Based Genome Editing of Transcription Factor Genes in Marchantia polymorpha.

Sugano SS, Nishihama R.

Methods Mol Biol. 2018;1830:109-126. doi: 10.1007/978-1-4939-8657-6_7.

PMID:
30043367
8.

Ligand-receptor co-evolution shaped the jasmonate pathway in land plants.

Monte I, Ishida S, Zamarreño AM, Hamberg M, Franco-Zorrilla JM, García-Casado G, Gouhier-Darimont C, Reymond P, Takahashi K, García-Mina JM, Nishihama R, Kohchi T, Solano R.

Nat Chem Biol. 2018 May;14(5):480-488. doi: 10.1038/s41589-018-0033-4. Epub 2018 Apr 9.

PMID:
29632411
9.

An evolutionarily conserved NIMA-related kinase directs rhizoid tip growth in the basal land plant Marchantia polymorpha.

Otani K, Ishizaki K, Nishihama R, Takatani S, Kohchi T, Takahashi T, Motose H.

Development. 2018 Mar 1;145(5). pii: dev154617. doi: 10.1242/dev.154617.

10.

Generative Cell Specification Requires Transcription Factors Evolutionarily Conserved in Land Plants.

Yamaoka S, Nishihama R, Yoshitake Y, Ishida S, Inoue K, Saito M, Okahashi K, Bao H, Nishida H, Yamaguchi K, Shigenobu S, Ishizaki K, Yamato KT, Kohchi T.

Curr Biol. 2018 Feb 5;28(3):479-486.e5. doi: 10.1016/j.cub.2017.12.053. Epub 2018 Jan 25.

PMID:
29395928
11.

Role of the Hof1-Cyk3 interaction in cleavage-furrow ingression and primary-septum formation during yeast cytokinesis.

Wang M, Nishihama R, Onishi M, Pringle JR.

Mol Biol Cell. 2018 Mar 1;29(5):597-609. doi: 10.1091/mbc.E17-04-0227. Epub 2018 Jan 10.

12.

The Roles of the Sole Activator-Type Auxin Response Factor in Pattern Formation of Marchantia polymorpha.

Kato H, Kouno M, Takeda M, Suzuki H, Ishizaki K, Nishihama R, Kohchi T.

Plant Cell Physiol. 2017 Oct 1;58(10):1642-1651. doi: 10.1093/pcp/pcx095.

PMID:
29016901
13.

Evolution of nuclear auxin signaling: lessons from genetic studies with basal land plants.

Kato H, Nishihama R, Weijers D, Kohchi T.

J Exp Bot. 2018 Jan 4;69(2):291-301. doi: 10.1093/jxb/erx267.

PMID:
28992186
14.

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J.

Cell. 2017 Oct 5;171(2):287-304.e15. doi: 10.1016/j.cell.2017.09.030.

15.

Early evolution of the land plant circadian clock.

Linde AM, Eklund DM, Kubota A, Pederson ERA, Holm K, Gyllenstrand N, Nishihama R, Cronberg N, Muranaka T, Oyama T, Kohchi T, Lagercrantz U.

New Phytol. 2017 Oct;216(2):576-590. doi: 10.1111/nph.14487. Epub 2017 Feb 28.

16.

Dynamic reorganization of the endomembrane system during spermatogenesis in Marchantia polymorpha.

Minamino N, Kanazawa T, Nishihama R, Yamato KT, Ishizaki K, Kohchi T, Nakano A, Ueda T.

J Plant Res. 2017 May;130(3):433-441. doi: 10.1007/s10265-017-0909-5. Epub 2017 Feb 3.

PMID:
28160149
17.

Evolutionary origin of phytochrome responses and signaling in land plants.

Inoue K, Nishihama R, Kohchi T.

Plant Cell Environ. 2017 Nov;40(11):2502-2508. doi: 10.1111/pce.12908. Epub 2017 Mar 1. Review.

PMID:
28098347
18.

Correction: Biphasic targeting and cleavage furrow ingression directed by the tail of a myosin II.

Fang X, Luo J, Nishihama R, Wloka C, Dravis C, Travaglia M, Iwase M, Vallen EA, Bi E.

J Cell Biol. 2016 Nov 21;215(4):591. Epub 2016 Nov 7. No abstract available.

19.

Phytochrome Signaling Is Mediated by PHYTOCHROME INTERACTING FACTOR in the Liverwort Marchantia polymorpha.

Inoue K, Nishihama R, Kataoka H, Hosaka M, Manabe R, Nomoto M, Tada Y, Ishizaki K, Kohchi T.

Plant Cell. 2016 Jun;28(6):1406-21. doi: 10.1105/tpc.15.01063. Epub 2016 Jun 1.

20.

Transcriptional Framework of Male Gametogenesis in the Liverwort Marchantia polymorpha L.

Higo A, Niwa M, Yamato KT, Yamada L, Sawada H, Sakamoto T, Kurata T, Shirakawa M, Endo M, Shigenobu S, Yamaguchi K, Ishizaki K, Nishihama R, Kohchi T, Araki T.

Plant Cell Physiol. 2016 Feb;57(2):325-38. doi: 10.1093/pcp/pcw005. Epub 2016 Feb 8.

PMID:
26858289
21.

Profiling and Characterization of Small RNAs in the Liverwort, Marchantia polymorpha, Belonging to the First Diverged Land Plants.

Tsuzuki M, Nishihama R, Ishizaki K, Kurihara Y, Matsui M, Bowman JL, Kohchi T, Hamada T, Watanabe Y.

Plant Cell Physiol. 2016 Feb;57(2):359-72. doi: 10.1093/pcp/pcv182. Epub 2015 Nov 19.

PMID:
26589267
22.

Development of Gateway Binary Vector Series with Four Different Selection Markers for the Liverwort Marchantia polymorpha.

Ishizaki K, Nishihama R, Ueda M, Inoue K, Ishida S, Nishimura Y, Shikanai T, Kohchi T.

PLoS One. 2015 Sep 25;10(9):e0138876. doi: 10.1371/journal.pone.0138876. eCollection 2015.

23.

Conditional Gene Expression/Deletion Systems for Marchantia polymorpha Using its Own Heat-Shock Promoter and Cre/loxP-Mediated Site-Specific Recombination.

Nishihama R, Ishida S, Urawa H, Kamei Y, Kohchi T.

Plant Cell Physiol. 2016 Feb;57(2):271-80. doi: 10.1093/pcp/pcv102. Epub 2015 Jul 6.

PMID:
26148498
24.

Molecular Genetic Tools and Techniques for Marchantia polymorpha Research.

Ishizaki K, Nishihama R, Yamato KT, Kohchi T.

Plant Cell Physiol. 2016 Feb;57(2):262-70. doi: 10.1093/pcp/pcv097. Epub 2015 Jun 26. Review.

PMID:
26116421
25.

Correction: Auxin-Mediated Transcriptional System with a Minimal Set of Components Is Critical for Morphogenesis through the Life Cycle in Marchantia polymorpha.

Kato H, Ishizaki K, Kouno M, Shirakawa M, Bowman JL, Nishihama R, Kohchi T.

PLoS Genet. 2015 Jun 26;11(6):e1005365. doi: 10.1371/journal.pgen.1005365. eCollection 2015 Jun. No abstract available.

26.

Auxin-Mediated Transcriptional System with a Minimal Set of Components Is Critical for Morphogenesis through the Life Cycle in Marchantia polymorpha.

Kato H, Ishizaki K, Kouno M, Shirakawa M, Bowman JL, Nishihama R, Kohchi T.

PLoS Genet. 2015 May 28;11(5):e1005084. doi: 10.1371/journal.pgen.1005084. eCollection 2015 May. Erratum in: PLoS Genet. 2015 Jun;11(6):e1005365.

27.

SNARE Molecules in Marchantia polymorpha: Unique and Conserved Features of the Membrane Fusion Machinery.

Kanazawa T, Era A, Minamino N, Shikano Y, Fujimoto M, Uemura T, Nishihama R, Yamato KT, Ishizaki K, Nishiyama T, Kohchi T, Nakano A, Ueda T.

Plant Cell Physiol. 2016 Feb;57(2):307-24. doi: 10.1093/pcp/pcv076. Epub 2015 May 27.

PMID:
26019268
28.

Diversification of histone H2A variants during plant evolution.

Kawashima T, Lorković ZJ, Nishihama R, Ishizaki K, Axelsson E, Yelagandula R, Kohchi T, Berger F.

Trends Plant Sci. 2015 Jul;20(7):419-25. doi: 10.1016/j.tplants.2015.04.005. Epub 2015 May 13. Review.

PMID:
25983206
29.

Phytochrome-mediated regulation of cell division and growth during regeneration and sporeling development in the liverwort Marchantia polymorpha.

Nishihama R, Ishizaki K, Hosaka M, Matsuda Y, Kubota A, Kohchi T.

J Plant Res. 2015 May;128(3):407-21. doi: 10.1007/s10265-015-0724-9. Epub 2015 Apr 5.

PMID:
25841334
30.

The carboxyl-terminal tail of the stalk of Arabidopsis NACK1/HINKEL kinesin is required for its localization to the cell plate formation site.

Sasabe M, Ishibashi N, Haruta T, Minami A, Kurihara D, Higashiyama T, Nishihama R, Ito M, Machida Y.

J Plant Res. 2015 Mar;128(2):327-36. doi: 10.1007/s10265-014-0687-2. Epub 2014 Dec 14.

31.

Phototropin encoded by a single-copy gene mediates chloroplast photorelocation movements in the liverwort Marchantia polymorpha.

Komatsu A, Terai M, Ishizaki K, Suetsugu N, Tsuboi H, Nishihama R, Yamato KT, Wada M, Kohchi T.

Plant Physiol. 2014 Sep;166(1):411-27. doi: 10.1104/pp.114.245100. Epub 2014 Aug 5.

32.

Co-option of a photoperiodic growth-phase transition system during land plant evolution.

Kubota A, Kita S, Ishizaki K, Nishihama R, Yamato KT, Kohchi T.

Nat Commun. 2014 Apr 22;5:3668. doi: 10.1038/ncomms4668.

PMID:
24752248
33.

Essential role of the E3 ubiquitin ligase nopperabo1 in schizogenous intercellular space formation in the liverwort Marchantia polymorpha.

Ishizaki K, Mizutani M, Shimamura M, Masuda A, Nishihama R, Kohchi T.

Plant Cell. 2013 Oct;25(10):4075-84. doi: 10.1105/tpc.113.117051. Epub 2013 Oct 29.

34.

Evolutionary insights into photoregulation of the cell cycle in the green lineage.

Nishihama R, Kohchi T.

Curr Opin Plant Biol. 2013 Oct;16(5):630-7. doi: 10.1016/j.pbi.2013.07.006. Epub 2013 Aug 23. Review.

PMID:
23978389
35.

Distinct roles of Rho1, Cdc42, and Cyk3 in septum formation and abscission during yeast cytokinesis.

Onishi M, Ko N, Nishihama R, Pringle JR.

J Cell Biol. 2013 Jul 22;202(2):311-29. doi: 10.1083/jcb.201302001.

36.

Targeting and functional mechanisms of the cytokinesis-related F-BAR protein Hof1 during the cell cycle.

Oh Y, Schreiter J, Nishihama R, Wloka C, Bi E.

Mol Biol Cell. 2013 May;24(9):1305-20. doi: 10.1091/mbc.E12-11-0804. Epub 2013 Mar 6.

37.

Evidence that a septin diffusion barrier is dispensable for cytokinesis in budding yeast.

Wloka C, Nishihama R, Onishi M, Oh Y, Hanna J, Pringle JR, Krauss M, Bi E.

Biol Chem. 2011 Aug;392(8-9):813-29. doi: 10.1515/BC.2011.083.

PMID:
21824009
38.

New insights into the phylogenetic distribution and evolutionary origins of the septins.

Nishihama R, Onishi M, Pringle JR.

Biol Chem. 2011 Aug;392(8-9):681-7. doi: 10.1515/BC.2011.086.

39.

Biphasic targeting and cleavage furrow ingression directed by the tail of a myosin II.

Fang X, Luo J, Nishihama R, Wloka C, Dravis C, Travaglia M, Iwase M, Vallen EA, Bi E.

J Cell Biol. 2010 Dec 27;191(7):1333-50. doi: 10.1083/jcb.201005134. Epub 2010 Dec 20. Erratum in: J Cell Biol. 2016 Nov 7;:.

40.

Role of Inn1 and its interactions with Hof1 and Cyk3 in promoting cleavage furrow and septum formation in S. cerevisiae.

Nishihama R, Schreiter JH, Onishi M, Vallen EA, Hanna J, Moravcevic K, Lippincott MF, Han H, Lemmon MA, Pringle JR, Bi E.

J Cell Biol. 2009 Jun 15;185(6):995-1012. doi: 10.1083/jcb.200903125.

41.

The anaphase-promoting complex promotes actomyosin-ring disassembly during cytokinesis in yeast.

Tully GH, Nishihama R, Pringle JR, Morgan DO.

Mol Biol Cell. 2009 Feb;20(4):1201-12. doi: 10.1091/mbc.E08-08-0822. Epub 2008 Dec 24.

42.

A role for very-long-chain fatty acids in furrow ingression during cytokinesis in Drosophila spermatocytes.

Szafer-Glusman E, Giansanti MG, Nishihama R, Bolival B, Pringle J, Gatti M, Fuller MT.

Curr Biol. 2008 Sep 23;18(18):1426-31. doi: 10.1016/j.cub.2008.08.061.

43.

Control of 5-FOA and 5-FU resistance by Saccharomyces cerevisiae YJL055W.

Ko N, Nishihama R, Pringle JR.

Yeast. 2008 Feb;25(2):155-60. doi: 10.1002/yea.1554.

44.

Identification of yeast IQGAP (Iqg1p) as an anaphase-promoting-complex substrate and its role in actomyosin-ring-independent cytokinesis.

Ko N, Nishihama R, Tully GH, Ostapenko D, Solomon MJ, Morgan DO, Pringle JR.

Mol Biol Cell. 2007 Dec;18(12):5139-53. Epub 2007 Oct 17.

45.

Mitotic cyclins stimulate the activity of c-Myb-like factors for transactivation of G2/M phase-specific genes in tobacco.

Araki S, Ito M, Soyano T, Nishihama R, Machida Y.

J Biol Chem. 2004 Jul 30;279(31):32979-88. Epub 2004 Jun 1.

46.

Nuclear localization and interaction of RolB with plant 14-3-3 proteins correlates with induction of adventitious roots by the oncogene rolB.

Moriuchi H, Okamoto C, Nishihama R, Yamashita I, Machida Y, Tanaka N.

Plant J. 2004 Apr;38(2):260-75.

47.

Retraction.

Nishihama R, Jeong S, DeYoung B, Clark SE.

Science. 2003 May 30;300(5624):1370. No abstract available.

PMID:
12775818
48.

NQK1/NtMEK1 is a MAPKK that acts in the NPK1 MAPKKK-mediated MAPK cascade and is required for plant cytokinesis.

Soyano T, Nishihama R, Morikiyo K, Ishikawa M, Machida Y.

Genes Dev. 2003 Apr 15;17(8):1055-67.

50.

Control of plant cytokinesis by an NPK1-mediated mitogen-activated protein kinase cascade.

Soyano T, Ishikawa M, Nishihama R, Araki S, Ito M, Ito M, Machida Y.

Philos Trans R Soc Lond B Biol Sci. 2002 Jun 29;357(1422):767-75. Review.

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