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Items: 18

1.

piRNA silencing contributes to interspecies hybrid sterility and reproductive isolation in Drosophila melanogaster.

Kotov AA, Adashev VE, Godneeva BK, Ninova M, Shatskikh AS, Bazylev SS, Aravin AA, Olenina LV.

Nucleic Acids Res. 2019 Feb 21. pii: gkz130. doi: 10.1093/nar/gkz130. [Epub ahead of print]

2.

Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis.

Ninova M, Griffiths-Jones S, Ronshaugen M.

Genome Biol. 2017 Sep 26;18(1):184. doi: 10.1186/s13059-017-1304-1.

3.

Stable Polycomb-dependent transgenerational inheritance of chromatin states in Drosophila.

Ciabrelli F, Comoglio F, Fellous S, Bonev B, Ninova M, Szabo Q, Xuéreb A, Klopp C, Aravin A, Paro R, Bantignies F, Cavalli G.

Nat Genet. 2017 Jun;49(6):876-886. doi: 10.1038/ng.3848. Epub 2017 Apr 24.

4.

Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum.

Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP.

Genome Biol Evol. 2016 Aug 3;8(7):2133-44. doi: 10.1093/gbe/evw143.

5.

Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors.

Chen YA, Stuwe E, Luo Y, Ninova M, Le Thomas A, Rozhavskaya E, Li S, Vempati S, Laver JD, Patel DJ, Smibert CA, Lipshitz HD, Toth KF, Aravin AA.

Mol Cell. 2016 Jul 7;63(1):97-109. doi: 10.1016/j.molcel.2016.05.010. Epub 2016 Jun 9.

6.

Splicing-independent loading of TREX on nascent RNA is required for efficient expression of dual-strand piRNA clusters in Drosophila.

Hur JK, Luo Y, Moon S, Ninova M, Marinov GK, Chung YD, Aravin AA.

Genes Dev. 2016 Apr 1;30(7):840-55. doi: 10.1101/gad.276030.115.

7.

The histone chaperone CAF-1 safeguards somatic cell identity.

Cheloufi S, Elling U, Hopfgartner B, Jung YL, Murn J, Ninova M, Hubmann M, Badeaux AI, Euong Ang C, Tenen D, Wesche DJ, Abazova N, Hogue M, Tasdemir N, Brumbaugh J, Rathert P, Jude J, Ferrari F, Blanco A, Fellner M, Wenzel D, Zinner M, Vidal SE, Bell O, Stadtfeld M, Chang HY, Almouzni G, Lowe SW, Rinn J, Wernig M, Aravin A, Shi Y, Park PJ, Penninger JM, Zuber J, Hochedlinger K.

Nature. 2015 Dec 10;528(7581):218-24. doi: 10.1038/nature15749.

8.

MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum.

Ninova M, Ronshaugen M, Griffiths-Jones S.

Genome Res. 2016 Jan;26(1):85-96. doi: 10.1101/gr.193367.115. Epub 2015 Oct 30.

9.

Conservation and losses of non-coding RNAs in avian genomes.

Gardner PP, Fasold M, Burge SW, Ninova M, Hertel J, Kehr S, Steeves TE, Griffiths-Jones S, Stadler PF.

PLoS One. 2015 Mar 30;10(3):e0121797. doi: 10.1371/journal.pone.0121797. eCollection 2015.

10.

The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima.

Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, Blankenburg KP, Brites D, Capella-Gutiérrez S, Coyle M, Dearden PK, Du Pasquier L, Duncan EJ, Ebert D, Eibner C, Erikson G, Evans PD, Extavour CG, Francisco L, Gabaldón T, Gillis WJ, Goodwin-Horn EA, Green JE, Griffiths-Jones S, Grimmelikhuijzen CJ, Gubbala S, Guigó R, Han Y, Hauser F, Havlak P, Hayden L, Helbing S, Holder M, Hui JH, Hunn JP, Hunnekuhl VS, Jackson L, Javaid M, Jhangiani SN, Jiggins FM, Jones TE, Kaiser TS, Kalra D, Kenny NJ, Korchina V, Kovar CL, Kraus FB, Lapraz F, Lee SL, Lv J, Mandapat C, Manning G, Mariotti M, Mata R, Mathew T, Neumann T, Newsham I, Ngo DN, Ninova M, Okwuonu G, Ongeri F, Palmer WJ, Patil S, Patraquim P, Pham C, Pu LL, Putman NH, Rabouille C, Ramos OM, Rhodes AC, Robertson HE, Robertson HM, Ronshaugen M, Rozas J, Saada N, Sánchez-Gracia A, Scherer SE, Schurko AM, Siggens KW, Simmons D, Stief A, Stolle E, Telford MJ, Tessmar-Raible K, Thornton R, van der Zee M, von Haeseler A, Williams JM, Willis JH, Wu Y, Zou X, Lawson D, Muzny DM, Worley KC, Gibbs RA, Akam M, Richards S.

PLoS Biol. 2014 Nov 25;12(11):e1002005. doi: 10.1371/journal.pbio.1002005. eCollection 2014 Nov.

11.

Conserved temporal patterns of microRNA expression in Drosophila support a developmental hourglass model.

Ninova M, Ronshaugen M, Griffiths-Jones S.

Genome Biol Evol. 2014 Aug 27;6(9):2459-67. doi: 10.1093/gbe/evu183.

12.

Target repression induced by endogenous microRNAs: large differences, small effects.

Kozomara A, Hunt S, Ninova M, Griffiths-Jones S, Ronshaugen M.

PLoS One. 2014 Aug 20;9(8):e104286. doi: 10.1371/journal.pone.0104286. eCollection 2014.

13.

Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis.

Ninova M, Ronshaugen M, Griffiths-Jones S.

RNA. 2014 Mar;20(3):360-72. doi: 10.1261/rna.041657.113. Epub 2014 Jan 21.

14.

Multiple products from microRNA transcripts.

Marco A, Ninova M, Griffiths-Jones S.

Biochem Soc Trans. 2013 Aug;41(4):850-4. doi: 10.1042/BST20130035. Review.

PMID:
23863143
15.

Clusters of microRNAs emerge by new hairpins in existing transcripts.

Marco A, Ninova M, Ronshaugen M, Griffiths-Jones S.

Nucleic Acids Res. 2013 Sep;41(16):7745-52. doi: 10.1093/nar/gkt534. Epub 2013 Jun 17.

16.

Antibacterial mono- and sesquiterpene esters of benzoic acids from Iranian propolis.

Trusheva B, Todorov I, Ninova M, Najdenski H, Daneshmand A, Bankova V.

Chem Cent J. 2010 Mar 29;4:8. doi: 10.1186/1752-153X-4-8.

17.

Examination of growth inhibitory properties of synthetic chalcones for which antibacterial activity was predicted.

Batovska D, Parushev S, Stamboliyska B, Tsvetkova I, Ninova M, Najdenski H.

Eur J Med Chem. 2009 May;44(5):2211-8. doi: 10.1016/j.ejmech.2008.05.010. Epub 2008 May 23.

PMID:
18584918
18.

Study on the substituents' effects of a series of synthetic chalcones against the yeast Candida albicans.

Batovska D, Parushev S, Slavova A, Bankova V, Tsvetkova I, Ninova M, Najdenski H.

Eur J Med Chem. 2007 Jan;42(1):87-92. Epub 2006 Sep 26.

PMID:
17007965

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