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Items: 1 to 50 of 76

1.
3.
4.

Synthetic networks: oscillators and toggle switches for Escherichia coli.

Perry N, Ninfa AJ.

Methods Mol Biol. 2012;813:287-300. doi: 10.1007/978-1-61779-412-4_17.

PMID:
22083749
5.

Load-induced modulation of signal transduction networks.

Jiang P, Ventura AC, Sontag ED, Merajver SD, Ninfa AJ, Del Vecchio D.

Sci Signal. 2011 Oct 11;4(194):ra67. doi: 10.1126/scisignal.2002152.

6.

Unnecessary signaling: poorly named?

Ninfa AJ.

J Bacteriol. 2011 Sep;193(18):4571-3. doi: 10.1128/JB.05682-11. Epub 2011 Jul 8. No abstract available.

7.

Signaling properties of a covalent modification cycle are altered by a downstream target.

Ventura AC, Jiang P, Van Wassenhove L, Del Vecchio D, Merajver SD, Ninfa AJ.

Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10032-7. doi: 10.1073/pnas.0913815107. Epub 2010 May 17.

8.

Use of two-component signal transduction systems in the construction of synthetic genetic networks.

Ninfa AJ.

Curr Opin Microbiol. 2010 Apr;13(2):240-5. doi: 10.1016/j.mib.2010.01.003. Epub 2010 Feb 9. Review.

9.

Building biological memory by linking positive feedback loops.

Chang DE, Leung S, Atkinson MR, Reifler A, Forger D, Ninfa AJ.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):175-80. doi: 10.1073/pnas.0908314107. Epub 2009 Dec 14.

12.
13.

Rate constants rather than biochemical mechanism determine behaviour of genetic clocks.

Conrad E, Mayo AE, Ninfa AJ, Forger DB.

J R Soc Interface. 2008 Aug 6;5 Suppl 1:S9-15. doi: 10.1098/rsif.2008.0046.focus.

14.

Modular cell biology: retroactivity and insulation.

Del Vecchio D, Ninfa AJ, Sontag ED.

Mol Syst Biol. 2008;4:161. doi: 10.1038/msb4100204. Epub 2008 Feb 12.

15.
16.

Using two-component systems and other bacterial regulatory factors for the fabrication of synthetic genetic devices.

Ninfa AJ, Selinsky S, Perry N, Atkins S, Xiu Song Q, Mayo A, Arps D, Woolf P, Atkinson MR.

Methods Enzymol. 2007;422:488-512.

17.

Regulation of carbon and nitrogen metabolism: adding regulation of ion channels and another second messenger to the mix.

Ninfa AJ.

Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4243-4. Epub 2007 Mar 7. No abstract available.

19.

Structure-function analysis of glutamine synthetase adenylyltransferase (ATase, EC 2.7.7.49) of Escherichia coli.

Jiang P, Pioszak AA, Ninfa AJ.

Biochemistry. 2007 Apr 3;46(13):4117-32. Epub 2007 Mar 14.

PMID:
17355124
20.

PII signal transduction proteins: sensors of alpha-ketoglutarate that regulate nitrogen metabolism.

Ninfa AJ, Jiang P.

Curr Opin Microbiol. 2005 Apr;8(2):168-73. Review.

PMID:
15802248
23.

Hysteresis vs. graded responses: the connections make all the difference.

Ninfa AJ, Mayo AE.

Sci STKE. 2004 May 4;2004(232):pe20. Review.

PMID:
15138328
24.

Assay of prokaryotic enhancer activity over a distance in vitro.

Bondarenko V, Liu YV, Ninfa AJ, Studitsky VM.

Methods Enzymol. 2003;370:324-37. No abstract available.

PMID:
14712657
26.

Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli.

Atkinson MR, Savageau MA, Myers JT, Ninfa AJ.

Cell. 2003 May 30;113(5):597-607.

27.

Antagonism of PII signalling by the AmtB protein of Escherichia coli.

Blauwkamp TA, Ninfa AJ.

Mol Microbiol. 2003 May;48(4):1017-28.

29.

Governor of the glnAp2 promoter of Escherichia coli.

Atkinson MR, Pattaramanon N, Ninfa AJ.

Mol Microbiol. 2002 Dec;46(5):1247-57.

30.
31.

Context-dependent functions of the PII and GlnK signal transduction proteins in Escherichia coli.

Atkinson MR, Blauwkamp TA, Ninfa AJ.

J Bacteriol. 2002 Oct;184(19):5364-75.

32.
33.

Nac-mediated repression of the serA promoter of Escherichia coli.

Blauwkamp TA, Ninfa AJ.

Mol Microbiol. 2002 Jul;45(2):351-63.

34.

PII signal transduction proteins.

Ninfa AJ, Atkinson MR.

Trends Microbiol. 2000 Apr;8(4):172-9. Review.

PMID:
10754576
36.
37.

Integration of antagonistic signals in the regulation of nitrogen assimilation in Escherichia coli.

Ninfa AJ, Jiang P, Atkinson MR, Peliska JA.

Curr Top Cell Regul. 2000;36:31-75. Review. No abstract available.

PMID:
10842746
38.
39.

Characterization of the GlnK protein of Escherichia coli.

Atkinson MR, Ninfa AJ.

Mol Microbiol. 1999 Apr;32(2):301-13.

42.
44.
45.
46.

Purification, characterization, and reconstitution of DNA-dependent RNA polymerases from Caulobacter crescentus.

Wu J, Ohta N, Benson AK, Ninfa AJ, Newton A.

J Biol Chem. 1997 Aug 22;272(34):21558-64.

48.

Structure/function analysis of the PII signal transduction protein of Escherichia coli: genetic separation of interactions with protein receptors.

Jiang P, Zucker P, Atkinson MR, Kamberov ES, Tirasophon W, Chandran P, Schefke BR, Ninfa AJ.

J Bacteriol. 1997 Jul;179(13):4342-53.

49.

Identification, characterization, and chromosomal organization of cell division cycle genes in Caulobacter crescentus.

Ohta N, Ninfa AJ, Allaire A, Kulick L, Newton A.

J Bacteriol. 1997 Apr;179(7):2169-80. Erratum in: J Bacteriol 1997 Jul;179(13):4455.

50.

Repression of the Klebsiella aerogenes nac promoter.

Feng J, Goss TJ, Bender RA, Ninfa AJ.

J Bacteriol. 1995 Oct;177(19):5535-8.

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