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High-Density Mapping of Triple Rust Resistance in Barley Using DArT-Seq Markers.

Dracatos PM, Haghdoust R, Singh RP, Huerta Espino J, Barnes CW, Forrest K, Hayden M, Niks RE, Park RF, Singh D.

Front Plant Sci. 2019 Apr 26;10:467. doi: 10.3389/fpls.2019.00467. eCollection 2019.


High Resolution Genetic and Physical Mapping of a Major Powdery Mildew Resistance Locus in Barley.

Hoseinzadeh P, Zhou R, Mascher M, Himmelbach A, Niks RE, Schweizer P, Stein N.

Front Plant Sci. 2019 Feb 14;10:146. doi: 10.3389/fpls.2019.00146. eCollection 2019.


Patterns of Transmission Ratio Distortion in Interspecific Lettuce Hybrids Reveal a Sex-Independent Gametophytic Barrier.

Giesbers AKJ, den Boer E, Ulen JJWEH, van Kaauwen MPW, Visser RGF, Niks RE, Jeuken MJW.

Genetics. 2019 Jan;211(1):263-276. doi: 10.1534/genetics.118.301566. Epub 2018 Nov 6.


Potential for re-emergence of wheat stem rust in the United Kingdom.

Lewis CM, Persoons A, Bebber DP, Kigathi RN, Maintz J, Findlay K, Bueno-Sancho V, Corredor-Moreno P, Harrington SA, Kangara N, Berlin A, García R, Germán SE, Hanzalová A, Hodson DP, Hovmøller MS, Huerta-Espino J, Imtiaz M, Mirza JI, Justesen AF, Niks RE, Omrani A, Patpour M, Pretorius ZA, Roohparvar R, Sela H, Singh RP, Steffenson B, Visser B, Fenwick PM, Thomas J, Wulff BBH, Saunders DGO.

Commun Biol. 2018 Feb 8;1:13. doi: 10.1038/s42003-018-0013-y. eCollection 2018.


Bidirectional backcrosses between wild and cultivated lettuce identify loci involved in nonhost resistance to downy mildew.

Giesbers AKJ, Boer ED, Braspenning DNJ, Bouten TPH, Specken JW, van Kaauwen MPW, Visser RGF, Niks RE, Jeuken MJW.

Theor Appl Genet. 2018 Aug;131(8):1761-1776. doi: 10.1007/s00122-018-3112-8. Epub 2018 May 25.


Mapping resistance to powdery mildew in barley reveals a large-effect nonhost resistance QTL.

Romero CCT, Vermeulen JP, Vels A, Himmelbach A, Mascher M, Niks RE.

Theor Appl Genet. 2018 May;131(5):1031-1045. doi: 10.1007/s00122-018-3055-0. Epub 2018 Jan 25.


A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley.

Delventhal R, Rajaraman J, Stefanato FL, Rehman S, Aghnoum R, McGrann GRD, Bolger M, Usadel B, Hedley PE, Boyd L, Niks RE, Schweizer P, Schaffrath U.

BMC Plant Biol. 2017 Dec 4;17(1):232. doi: 10.1186/s12870-017-1178-0.


Effector-mediated discovery of a novel resistance gene against Bremia lactucae in a nonhost lettuce species.

Giesbers AKJ, Pelgrom AJE, Visser RGF, Niks RE, Van den Ackerveken G, Jeuken MJW.

New Phytol. 2017 Nov;216(3):915-926. doi: 10.1111/nph.14741. Epub 2017 Aug 21.


High-resolution mapping of genes involved in plant stage-specific partial resistance of barley to leaf rust.

Yeo FKS, Bouchon R, Kuijken R, Loriaux A, Boyd C, Niks RE, Marcel TC.

Mol Breed. 2017;37(4):45. doi: 10.1007/s11032-017-0624-x. Epub 2017 Mar 16.


The barley (Hordeum vulgare) cellulose synthase-like D2 gene (HvCslD2) mediates penetration resistance to host-adapted and nonhost isolates of the powdery mildew fungus.

Douchkov D, Lueck S, Hensel G, Kumlehn J, Rajaraman J, Johrde A, Doblin MS, Beahan CT, Kopischke M, Fuchs R, Lipka V, Niks RE, Bulone V, Chowdhury J, Little A, Burton RA, Bacic A, Fincher GB, Schweizer P.

New Phytol. 2016 Oct;212(2):421-33. doi: 10.1111/nph.14065. Epub 2016 Jun 28.


Isolate Specificity and Polygenic Inheritance of Resistance in Barley to the Heterologous Rust Pathogen Puccinia graminis f. sp. avenae.

Dracatos PM, Nansamba M, Berlin A, Park RF, Niks RE.

Phytopathology. 2016 Sep;106(9):1029-37. doi: 10.1094/PHYTO-10-15-0264-R. Epub 2016 Jun 22.


Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei.

Yeo FK, Wang Y, Vozabova T, Huneau C, Leroy P, Chalhoub B, Qi XQ, Niks RE, Marcel TC.

Theor Appl Genet. 2016 Feb;129(2):289-304. doi: 10.1007/s00122-015-2627-5. Epub 2015 Nov 5.


Quantitative resistance to biotrophic filamentous plant pathogens: concepts, misconceptions, and mechanisms.

Niks RE, Qi X, Marcel TC.

Annu Rev Phytopathol. 2015;53:445-70. doi: 10.1146/annurev-phyto-080614-115928. Epub 2015 Jun 5. Review.


Effects of stacked quantitative resistances to downy mildew in lettuce do not simply add up.

den Boer E, Pelgrom KT, Zhang NW, Visser RG, Niks RE, Jeuken MJ.

Theor Appl Genet. 2014 Aug;127(8):1805-16. doi: 10.1007/s00122-014-2342-7. Epub 2014 Jun 14.


Golden SusPtrit: a genetically well transformable barley line for studies on the resistance to rust fungi.

Yeo FK, Hensel G, Vozábová T, Martin-Sanz A, Marcel TC, Kumlehn J, Niks RE.

Theor Appl Genet. 2014 Feb;127(2):325-37. doi: 10.1007/s00122-013-2221-7. Epub 2013 Nov 19.


Fine mapping quantitative resistances to downy mildew in lettuce revealed multiple sub-QTLs with plant stage dependent effects reducing or even promoting the infection.

den Boer E, Zhang NW, Pelgrom K, Visser RG, Niks RE, Jeuken MJ.

Theor Appl Genet. 2013 Dec;126(12):2995-3007. doi: 10.1007/s00122-013-2188-4. Epub 2013 Sep 14.


Rph22: mapping of a novel leaf rust resistance gene introgressed from the non-host Hordeum bulbosum L. into cultivated barley (Hordeum vulgare L.).

Johnston PA, Niks RE, Meiyalaghan V, Blanchet E, Pickering R.

Theor Appl Genet. 2013 Jun;126(6):1613-25. doi: 10.1007/s00122-013-2078-9. Epub 2013 Mar 7.


Evidence for a minor gene-for-minor gene interaction explaining nonhypersensitive polygenic partial disease resistance.

González AM, Marcel TC, Niks RE.

Phytopathology. 2012 Nov;102(11):1086-93. doi: 10.1094/PHYTO-03-12-0056-R.


QTLs for resistance to the false brome rust Puccinia brachypodii in the model grass Brachypodium distachyon L.

Barbieri M, Marcel TC, Niks RE, Francia E, Pasquariello M, Mazzamurro V, Garvin DF, Pecchioni N.

Genome. 2012 Feb;55(2):152-63. doi: 10.1139/G2012-001. Epub 2012 Feb 9.


Host Status of False Brome Grass to the Leaf Rust Fungus Puccinia brachypodii and the Stripe Rust Fungus P. striiformis.

Barbieri M, Marcel TC, Niks RE.

Plant Dis. 2011 Nov;95(11):1339-1345. doi: 10.1094/PDIS-11-10-0825.


Combining genetical genomics and bulked segregant analysis-based differential expression: an approach to gene localization.

Chen X, Hedley PE, Morris J, Liu H, Niks RE, Waugh R.

Theor Appl Genet. 2011 May;122(7):1375-83. doi: 10.1007/s00122-011-1538-3. Epub 2011 Jan 26.


Differential gene expression in nearly isogenic lines with QTL for partial resistance to Puccinia hordei in barley.

Chen X, Niks RE, Hedley PE, Morris J, Druka A, Marcel TC, Vels A, Waugh R.

BMC Genomics. 2010 Nov 11;11:629. doi: 10.1186/1471-2164-11-629.


Transgressive segregation for very low and high levels of basal resistance to powdery mildew in barley.

Aghnoum R, Niks RE.

J Plant Physiol. 2011 Jan 1;168(1):45-50. doi: 10.1016/j.jplph.2010.09.005. Epub 2010 Oct 16.


Peroxidase profiling reveals genetic linkage between peroxidase gene clusters and basal host and non-host resistance to rusts and mildew in barley.

González AM, Marcel TC, Kohutova Z, Stam P, van der Linden CG, Niks RE.

PLoS One. 2010 Aug 2;5(8):e10495. doi: 10.1371/journal.pone.0010495.


The phenotypic expression of QTLs for partial resistance to barley leaf rust during plant development.

Wang L, Wang Y, Wang Z, Marcel TC, Niks RE, Qi X.

Theor Appl Genet. 2010 Sep;121(5):857-64. doi: 10.1007/s00122-010-1355-0. Epub 2010 May 19.


An eQTL analysis of partial resistance to Puccinia hordei in barley.

Chen X, Hackett CA, Niks RE, Hedley PE, Booth C, Druka A, Marcel TC, Vels A, Bayer M, Milne I, Morris J, Ramsay L, Marshall D, Cardle L, Waugh R.

PLoS One. 2010 Jan 6;5(1):e8598. doi: 10.1371/journal.pone.0008598.


Basal host resistance of barley to powdery mildew: connecting quantitative trait Loci and candidate genes.

Aghnoum R, Marcel TC, Johrde A, Pecchioni N, Schweizer P, Niks RE.

Mol Plant Microbe Interact. 2010 Jan;23(1):91-102. doi: 10.1094/MPMI-23-1-0091.


Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid.

Jeuken MJ, Zhang NW, McHale LK, Pelgrom K, den Boer E, Lindhout P, Michelmore RW, Visser RG, Niks RE.

Plant Cell. 2009 Oct;21(10):3368-78. doi: 10.1105/tpc.109.070334. Epub 2009 Oct 23.


Specificity and levels of nonhost resistance to nonadapted Blumeria graminis forms in barley.

Aghnoum R, Niks RE.

New Phytol. 2010 Jan;185(1):275-84. doi: 10.1111/j.1469-8137.2009.03039.x. Epub 2009 Oct 8.


Three combined quantitative trait loci from nonhost Lactuca saligna are sufficient to provide complete resistance of lettuce against Bremia lactucae.

Zhang NW, Pelgrom K, Niks RE, Visser RG, Jeuken MJ.

Mol Plant Microbe Interact. 2009 Sep;22(9):1160-8. doi: 10.1094/MPMI-22-9-1160.


Nonhost and basal resistance: how to explain specificity?

Niks RE, Marcel TC.

New Phytol. 2009 Jun;182(4):817-28. doi: 10.1111/j.1469-8137.2009.02849.x. Review.


First Report of Powdery Mildew (Oidium sp.) on Pincushion Flower (Scabiosa columbaria) in New York.

Jankovics T, Kiss L, Niks RE, Daughtrey ML.

Plant Dis. 2009 Mar;93(3):316. doi: 10.1094/PDIS-93-3-0316B.


Specificity of Prehaustorial Resistance to Puccinia hordei and to Two Inappropriate Rust Fungi in Barley.

Hoogkamp TJ, Chen WQ, Niks RE.

Phytopathology. 1998 Aug;88(8):856-61. doi: 10.1094/PHYTO.1998.88.8.856.


Oidium neolycopersici: intraspecific variability inferred from amplified fragment length polymorphism analysis and relationship with closely related powdery mildew fungi infecting various plant species.

Jankovics T, Bai Y, Kovács GM, Bardin M, Nicot PC, Toyoda H, Matsuda Y, Niks RE, Kiss L.

Phytopathology. 2008 May;98(5):529-40. doi: 10.1094/PHYTO-98-5-0529.


The R(Pi-mcd1) locus from Solanum microdontum involved in resistance to Phytophthora infestans, causing a delay in infection, maps on potato chromosome 4 in a cluster of NBS-LRR genes.

Tan MY, Hutten RC, Celis C, Park TH, Niks RE, Visser RG, van Eck HJ.

Mol Plant Microbe Interact. 2008 Jul;21(7):909-18. doi: 10.1094/MPMI-21-7-0909.


High diversity of genes for nonhost resistance of barley to heterologous rust fungi.

Jafary H, Albertazzi G, Marcel TC, Niks RE.

Genetics. 2008 Apr;178(4):2327-39. doi: 10.1534/genetics.107.077552.


Dissection of the barley 2L1.0 region carrying the 'Laevigatum' quantitative resistance gene to leaf rust using near-isogenic lines (NIL) and subNIL.

Marcel TC, Aghnoum R, Durand J, Varshney RK, Niks RE.

Mol Plant Microbe Interact. 2007 Dec;20(12):1604-15.


A high density barley microsatellite consensus map with 775 SSR loci.

Varshney RK, Marcel TC, Ramsay L, Russell J, Röder MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A.

Theor Appl Genet. 2007 Apr;114(6):1091-103. Epub 2007 Mar 8.


Relative Ratio of Mature Pustules: A Simple Method to Assess Partial Resistance of Barley to Puccinia hordei.

Jiang GL, Marcel TC, Martínez F, Niks RE.

Plant Dis. 2007 Mar;91(3):301-307. doi: 10.1094/PDIS-91-3-0301.


A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues.

Marcel TC, Varshney RK, Barbieri M, Jafary H, de Kock MJ, Graner A, Niks RE.

Theor Appl Genet. 2007 Feb;114(3):487-500. Epub 2006 Nov 18.


Innate nonhost immunity in barley to different heterologous rust fungi is controlled by sets of resistance genes with different and overlapping specificities.

Jafary H, Szabo LJ, Niks RE.

Mol Plant Microbe Interact. 2006 Nov;19(11):1270-9. Erratum in: Mol Plant Microbe Interact. 2006 Dec;19(12):1472.


Tomato defense to Oidium neolycopersici: dominant Ol genes confer isolate-dependent resistance via a different mechanism than recessive ol-2.

Bai Y, van der Hulst R, Bonnema G, Marcel TC, Meijer-Dekens F, Niks RE, Lindhout P.

Mol Plant Microbe Interact. 2005 Apr;18(4):354-62. Erratum in: Mol Plant Microbe Interact. 2005 May;18(5):508.


Infection Structures of Host-Specialized Isolates of Uromyces viciae-fabae and of Other Species of Uromyces Infecting Leguminous Crops.

Emeran AA, Sillero JC, Niks RE, Rubiales D.

Plant Dis. 2005 Jan;89(1):17-22. doi: 10.1094/PD-89-0017.


Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars.

Kraakman AT, Niks RE, Van den Berg PM, Stam P, Van Eeuwijk FA.

Genetics. 2004 Sep;168(1):435-46.


A novel major gene on chromosome 6H for resistance of barley against the barley yellow dwarf virus.

Niks RE, Habekuss A, Bekele B, Ordon F.

Theor Appl Genet. 2004 Nov;109(7):1536-43. Epub 2004 Aug 25.


Mechanistic and genetic overlap of barley host and non-host resistance to Blumeria graminis.

Trujillo M, Troeger M, Niks RE, Kogel KH, Hückelhoven R.

Mol Plant Pathol. 2004 Sep 1;5(5):389-96. doi: 10.1111/j.1364-3703.2004.00238.x.


QTL mapping provides evidence for lack of association of the avoidance of leaf rust in Hordeum chilense with stomata density.

Vaz Patto MC, Rubiales D, Martín A, Hernández P, Lindhout P, Niks RE, Stam P.

Theor Appl Genet. 2003 May;106(7):1283-92. Epub 2003 Mar 5.


Abnormal germling development by brown rust and powdery mildew on cer barley mutants.

Rubiales D, Ramirez MC, Carver TL, Niks RE.

Hereditas. 2001;135(2-3):271-6.

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