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Items: 34

1.

Mechanism of nitrite-dependent NO synthesis by human sulfite oxidase.

Bender D, Tobias Kaczmarek A, Niks D, Hille R, Schwarz G.

Biochem J. 2019 Jun 28;476(12):1805-1815. doi: 10.1042/BCJ20190143.

PMID:
31167903
2.

Synthesis of Formate from CO2 Gas Catalyzed by an O2-Tolerant NAD-Dependent Formate Dehydrogenase and Glucose Dehydrogenase.

Yu X, Niks D, Ge X, Liu H, Hille R, Mulchandani A.

Biochemistry. 2019 Apr 9;58(14):1861-1868. doi: 10.1021/acs.biochem.8b01301. Epub 2019 Mar 18.

PMID:
30839197
3.

Reductive activation of CO2 by formate dehydrogenases.

Niks D, Hille R.

Methods Enzymol. 2018;613:277-295. doi: 10.1016/bs.mie.2018.10.013. Epub 2018 Nov 23.

PMID:
30509470
4.

Molybdenum-Containing Enzymes.

Niks D, Hille R.

Methods Mol Biol. 2019;1876:55-63. doi: 10.1007/978-1-4939-8864-8_4.

PMID:
30317474
5.

Molybdenum- and tungsten-containing formate dehydrogenases and formylmethanofuran dehydrogenases: Structure, mechanism, and cofactor insertion.

Niks D, Hille R.

Protein Sci. 2019 Jan;28(1):111-122. doi: 10.1002/pro.3498. Epub 2018 Oct 31.

PMID:
30120799
6.

Kinetic and spectroscopic characterization of tungsten-substituted DMSO reductase from Rhodobacter sphaeroides.

Pacheco J, Niks D, Hille R.

J Biol Inorg Chem. 2018 Mar;23(2):295-301. doi: 10.1007/s00775-017-1531-7. Epub 2018 Jan 3.

PMID:
29299674
7.

Electron transfer through arsenite oxidase: Insights into Rieske interaction with cytochrome c.

Watson C, Niks D, Hille R, Vieira M, Schoepp-Cothenet B, Marques AT, Romão MJ, Santos-Silva T, Santini JM.

Biochim Biophys Acta Bioenerg. 2017 Oct;1858(10):865-872. doi: 10.1016/j.bbabio.2017.08.003. Epub 2017 Aug 8.

8.

Efficient reduction of CO2 by the molybdenum-containing formate dehydrogenase from Cupriavidus necator (Ralstonia eutropha).

Yu X, Niks D, Mulchandani A, Hille R.

J Biol Chem. 2017 Oct 13;292(41):16872-16879. doi: 10.1074/jbc.M117.785576. Epub 2017 Aug 7.

9.

Spectroscopic and Kinetic Properties of the Molybdenum-containing, NAD+-dependent Formate Dehydrogenase from Ralstonia eutropha.

Niks D, Duvvuru J, Escalona M, Hille R.

J Biol Chem. 2016 Jan 15;291(3):1162-74. doi: 10.1074/jbc.M115.688457. Epub 2015 Nov 9.

10.

Sulfite Oxidase Catalyzes Single-Electron Transfer at Molybdenum Domain to Reduce Nitrite to Nitric Oxide.

Wang J, Krizowski S, Fischer-Schrader K, Niks D, Tejero J, Sparacino-Watkins C, Wang L, Ragireddy V, Frizzell S, Kelley EE, Zhang Y, Basu P, Hille R, Schwarz G, Gladwin MT.

Antioxid Redox Signal. 2015 Aug 1;23(4):283-94. doi: 10.1089/ars.2013.5397. Epub 2014 Dec 11.

11.

Effect of exchange of the cysteine molybdenum ligand with selenocysteine on the structure and function of the active site in human sulfite oxidase.

Reschke S, Niks D, Wilson H, Sigfridsson KG, Haumann M, Rajagopalan KV, Hille R, Leimkühler S.

Biochemistry. 2013 Nov 19;52(46):8295-303. doi: 10.1021/bi4008512. Epub 2013 Nov 7.

PMID:
24147957
12.

Allostery and substrate channeling in the tryptophan synthase bienzyme complex: evidence for two subunit conformations and four quaternary states.

Niks D, Hilario E, Dierkers A, Ngo H, Borchardt D, Neubauer TJ, Fan L, Mueller LJ, Dunn MF.

Biochemistry. 2013 Sep 17;52(37):6396-411. doi: 10.1021/bi400795e. Epub 2013 Sep 6.

13.

The structure of a Xanthomonas general stress protein involved in citrus canker reveals its flavin-binding property.

Hilario E, Li Y, Niks D, Fan L.

Acta Crystallogr D Biol Crystallogr. 2012 Jul;68(Pt 7):846-53. doi: 10.1107/S0907444912014126. Epub 2012 Jun 19.

PMID:
22751670
14.

Molecular mechanism of 14-3-3 protein-mediated inhibition of plant nitrate reductase.

Lambeck IC, Fischer-Schrader K, Niks D, Roeper J, Chi JC, Hille R, Schwarz G.

J Biol Chem. 2012 Feb 10;287(7):4562-71. doi: 10.1074/jbc.M111.323113. Epub 2011 Dec 13.

15.

Structure of the molybdenum site in YedY, a sulfite oxidase homologue from Escherichia coli.

Havelius KG, Reschke S, Horn S, Döring A, Niks D, Hille R, Schulzke C, Leimkühler S, Haumann M.

Inorg Chem. 2011 Feb 7;50(3):741-8. doi: 10.1021/ic101291j. Epub 2010 Dec 29.

PMID:
21190337
16.

X-ray and NMR crystallography in an enzyme active site: the indoline quinonoid intermediate in tryptophan synthase.

Lai J, Niks D, Wang Y, Domratcheva T, Barends TR, Schwarz F, Olsen RA, Elliott DW, Fatmi MQ, Chang CE, Schlichting I, Dunn MF, Mueller LJ.

J Am Chem Soc. 2011 Jan 12;133(1):4-7. doi: 10.1021/ja106555c. Epub 2010 Dec 10.

PMID:
21142052
17.

Participation of glutamate-354 of the CP43 polypeptide in the ligation of manganese and the binding of substrate water in photosystem II.

Service RJ, Yano J, McConnell I, Hwang HJ, Niks D, Hille R, Wydrzynski T, Burnap RL, Hillier W, Debus RJ.

Biochemistry. 2011 Jan 11;50(1):63-81. Epub 2010 Dec 8.

18.

Biochemical and spectroscopic characterization of the human mitochondrial amidoxime reducing components hmARC-1 and hmARC-2 suggests the existence of a new molybdenum enzyme family in eukaryotes.

Wahl B, Reichmann D, Niks D, Krompholz N, Havemeyer A, Clement B, Messerschmidt T, Rothkegel M, Biester H, Hille R, Mendel RR, Bittner F.

J Biol Chem. 2010 Nov 26;285(48):37847-59. doi: 10.1074/jbc.M110.169532. Epub 2010 Sep 22.

19.

Tryptophan synthase: structure and function of the monovalent cation site.

Dierkers AT, Niks D, Schlichting I, Dunn MF.

Biochemistry. 2009 Nov 24;48(46):10997-1010. doi: 10.1021/bi9008374.

20.

Kinetic characterization of xenobiotic reductase A from Pseudomonas putida 86.

Spiegelhauer O, Dickert F, Mende S, Niks D, Hille R, Ullmann M, Dobbek H.

Biochemistry. 2009 Dec 8;48(48):11412-20. doi: 10.1021/bi901370u.

PMID:
19839648
21.

J-Based 3D sidechain correlation in solid-state proteins.

Tian Y, Chen L, Niks D, Kaiser JM, Lai J, Rienstra CM, Dunn MF, Mueller LJ.

Phys Chem Chem Phys. 2009 Aug 28;11(32):7078-86. doi: 10.1039/b911570f. Epub 2009 Jul 20.

22.

1H[19F] NOE NMR structural signatures of the insulin R6 hexamer: evidence of a capped HisB10 site in aryl- and arylacryloyl-carboxylate complexes.

Keidel D, Bonaccio M, Ghaderi N, Niks D, Borchardt D, Dunn MF.

Chembiochem. 2009 Feb 13;10(3):450-3. doi: 10.1002/cbic.200800746.

PMID:
19145608
23.

Tryptophan synthase: the workings of a channeling nanomachine.

Dunn MF, Niks D, Ngo H, Barends TR, Schlichting I.

Trends Biochem Sci. 2008 Jun;33(6):254-64. doi: 10.1016/j.tibs.2008.04.008. Epub 2008 May 15. Review.

PMID:
18486479
24.

Structure and mechanistic implications of a tryptophan synthase quinonoid intermediate.

Barends TR, Domratcheva T, Kulik V, Blumenstein L, Niks D, Dunn MF, Schlichting I.

Chembiochem. 2008 May 5;9(7):1024-8. doi: 10.1002/cbic.200700703. No abstract available.

PMID:
18351684
25.

BetaQ114N and betaT110V mutations reveal a critically important role of the substrate alpha-carboxylate site in the reaction specificity of tryptophan synthase.

Blumenstein L, Domratcheva T, Niks D, Ngo H, Seidel R, Dunn MF, Schlichting I.

Biochemistry. 2007 Dec 11;46(49):14100-16. Epub 2007 Nov 16.

PMID:
18004874
26.

Allosteric regulation of substrate channeling in tryptophan synthase: modulation of the L-serine reaction in stage I of the beta-reaction by alpha-site ligands.

Ngo H, Kimmich N, Harris R, Niks D, Blumenstein L, Kulik V, Barends TR, Schlichting I, Dunn MF.

Biochemistry. 2007 Jul 3;46(26):7740-53. Epub 2007 Jun 9.

PMID:
17559232
27.

Allosteric regulation of tryptophan synthase channeling: the internal aldimine probed by trans-3-indole-3'-acrylate binding.

Casino P, Niks D, Ngo H, Pan P, Brzovic P, Blumenstein L, Barends TR, Schlichting I, Dunn MF.

Biochemistry. 2007 Jul 3;46(26):7728-39. Epub 2007 Jun 9.

PMID:
17559231
28.

Synthesis and characterization of allosteric probes of substrate channeling in the tryptophan synthase bienzyme complex.

Ngo H, Harris R, Kimmich N, Casino P, Niks D, Blumenstein L, Barends TR, Kulik V, Weyand M, Schlichting I, Dunn MF.

Biochemistry. 2007 Jul 3;46(26):7713-27. Epub 2007 Jun 9.

PMID:
17559195
29.
30.

Allosteric communication in the tryptophan synthase bienzyme complex: roles of the beta-subunit aspartate 305-arginine 141 salt bridge.

Ferrari D, Niks D, Yang LH, Miles EW, Dunn MF.

Biochemistry. 2003 Jul 1;42(25):7807-18.

PMID:
12820890
31.

On the role of alphaThr183 in the allosteric regulation and catalytic mechanism of tryptophan synthase.

Kulik V, Weyand M, Seidel R, Niks D, Arac D, Dunn MF, Schlichting I.

J Mol Biol. 2002 Dec 6;324(4):677-90.

PMID:
12460570
32.

Proton transfers in the beta-reaction catalyzed by tryptophan synthase.

Hur O, Niks D, Casino P, Dunn MF.

Biochemistry. 2002 Aug 6;41(31):9991-10001.

PMID:
12146963
33.
34.

The reaction of yeast cystathionine beta-synthase is rate-limited by the conversion of aminoacrylate to cystathionine.

Jhee KH, Niks D, McPhie P, Dunn MF, Miles EW.

Biochemistry. 2001 Sep 11;40(36):10873-80.

PMID:
11535064

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