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Items: 1 to 50 of 133

1.

The third structural switch in the archaeal translation initiation factor 2 (aIF2) molecule and its possible role in the initiation of GTP hydrolysis and the removal of aIF2 from the ribosome.

Nikonov O, Kravchenko O, Nevskaya N, Stolboushkina E, Garber M, Nikonov S.

Acta Crystallogr D Struct Biol. 2019 Apr 1;75(Pt 4):392-399. doi: 10.1107/S2059798319002304. Epub 2019 Mar 28.

PMID:
30988256
2.

Amelioration of Neurosensory Structure and Function in Animal and Cellular Models of a Congenital Blindness.

Song JY, Aravand P, Nikonov S, Leo L, Lyubarsky A, Bennicelli JL, Pan J, Wei Z, Shpylchak I, Herrera P, Bennett DJ, Commins N, Maguire AM, Pham J, den Hollander AI, Cremers FPM, Koenekoop RK, Roepman R, Nishina P, Zhou S, Pan W, Ying GS, Aleman TS, de Melo J, McNamara I, Sun J, Mills J, Bennett J.

Mol Ther. 2018 Jun 6;26(6):1581-1593. doi: 10.1016/j.ymthe.2018.03.015. Epub 2018 Mar 21.

3.

[Influence of Nonconserved Regions of L1 Protuberance of Thermus thermophilus Ribosome on the Affinity of L1 Protein to 23s rRNA].

Kostareva OS, Nevskaya NA, Tishchenko SV, Gabdulkhakov AG, Garber MB, Nikonov SV.

Mol Biol (Mosk). 2018 Jan-Feb;52(1):106-111. doi: 10.7868/S0026898418010147. Russian.

4.

Protocols for Visually Guided Navigation Assessment of Efficacy of Retina-Directed Cell or Gene Therapy in Canines.

Aravand P, Ramachandran PS, Schpylchak I, Phelps NT, Nikonov S, Bennett J.

Front Neurosci. 2017 Apr 26;11:215. doi: 10.3389/fnins.2017.00215. eCollection 2017.

5.

Perfect Hemihedral Twinning in Crystals of the γ-Subunit of Translation Initiation Factor 2 from Sulfolobus solfataricus: Cause and Effect.

Kravchenko OV, Nikonov OS, Nevskaya NA, Stolboushkina EA, Arkhipova VI, Garber MB, Nikonov SV.

Biochemistry (Mosc). 2016 Oct;81(10):1205-1212.

6.

Water clusters in the nucleotide-binding pocket of the protein aIF2γ from the archaeon Sulfolobus solfataricus: Proton transmission.

Nikonov O, Kravchenko O, Arkhipova V, Stolboushkina E, Nikonov S, Garber M.

Biochimie. 2016 Feb;121:197-203. doi: 10.1016/j.biochi.2015.11.029. Epub 2015 Dec 15.

PMID:
26700147
7.

Impairments of Antigen-Presenting Cells in Pulmonary Tuberculosis.

Sakhno LV, Shevela EY, Tikhonova MA, Nikonov SD, Ostanin AA, Chernykh ER.

J Immunol Res. 2015;2015:793292. doi: 10.1155/2015/793292. Epub 2015 Aug 3.

8.

Binding of the 5'-Triphosphate End of mRNA to the γ-Subunit of Translation Initiation Factor 2 of the Crenarchaeon Sulfolobus solfataricus.

Arkhipova V, Stolboushkina E, Kravchenko O, Kljashtorny V, Gabdulkhakov A, Garber M, Nikonov S, Märtens B, Bläsi U, Nikonov O.

J Mol Biol. 2015 Sep 25;427(19):3086-95. doi: 10.1016/j.jmb.2015.07.020. Epub 2015 Aug 2.

PMID:
26244522
9.

The Cold Shock Domain of YB-1 Segregates RNA from DNA by Non-Bonded Interactions.

Kljashtorny V, Nikonov S, Ovchinnikov L, Lyabin D, Vodovar N, Curmi P, Manivet P.

PLoS One. 2015 Jul 6;10(7):e0130318. doi: 10.1371/journal.pone.0130318. eCollection 2015.

10.

Protein-RNA affinity of ribosomal protein L1 mutants does not correlate with the number of intermolecular interactions.

Tishchenko S, Kostareva O, Gabdulkhakov A, Mikhaylina A, Nikonova E, Nevskaya N, Sarskikh A, Piendl W, Garber M, Nikonov S.

Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):376-86. doi: 10.1107/S1399004714026248. Epub 2015 Jan 23.

PMID:
25664749
11.

Restoration of visual function by expression of a light-gated mammalian ion channel in retinal ganglion cells or ON-bipolar cells.

Gaub BM, Berry MH, Holt AE, Reiner A, Kienzler MA, Dolgova N, Nikonov S, Aguirre GD, Beltran WA, Flannery JG, Isacoff EY.

Proc Natl Acad Sci U S A. 2014 Dec 23;111(51):E5574-83. doi: 10.1073/pnas.1414162111. Epub 2014 Dec 8.

12.

Mutant forms of Escherichia coli protein L25 unable to bind to 5S rRNA are incorporated efficiently into the ribosome in vivo.

Anikaev AY, Korepanov AP, Korobeinikova AV, Kljashtorny VG, Piendl W, Nikonov SV, Garber MB, Gongadze GM.

Biochemistry (Mosc). 2014 Aug;79(8):826-35. doi: 10.1134/S0006297914080112.

PMID:
25365493
13.

Conformational transitions in the γ subunit of the archaeal translation initiation factor 2.

Nikonov O, Stolboushkina E, Arkhipova V, Kravchenko O, Nikonov S, Garber M.

Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):658-67. doi: 10.1107/S1399004713032240. Epub 2014 Feb 15.

PMID:
24598735
14.

In Vitro biocompatibility evaluation of a root canal filling material that expands on water sorption.

Eid AA, Nikonov SY, Looney SW, Didato A, Niu LN, Levin MD, Rueggeberg FA, Pashley DH, Watanabe I, Tay FR.

J Endod. 2013 Jul;39(7):883-8. doi: 10.1016/j.joen.2013.03.003. Epub 2013 Apr 3.

PMID:
23791256
15.

Revisiting the Haloarcula marismortui 50S ribosomal subunit model.

Gabdulkhakov A, Nikonov S, Garber M.

Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):997-1004. doi: 10.1107/S0907444913004745. Epub 2013 May 11.

PMID:
23695244
16.

Cones respond to light in the absence of transducin β subunit.

Nikonov SS, Lyubarsky A, Fina ME, Nikonova ES, Sengupta A, Chinniah C, Ding XQ, Smith RG, Pugh EN Jr, Vardi N, Dhingra A.

J Neurosci. 2013 Mar 20;33(12):5182-94. doi: 10.1523/JNEUROSCI.5204-12.2013.

17.

Crystal structure of the archaeal translation initiation factor 2 in complex with a GTP analogue and Met-tRNAf(Met.).

Stolboushkina E, Nikonov S, Zelinskaya N, Arkhipova V, Nikulin A, Garber M, Nikonov O.

J Mol Biol. 2013 Mar 25;425(6):989-98. doi: 10.1016/j.jmb.2012.12.023. Epub 2013 Jan 3.

PMID:
23291527
18.

Cytotoxic activity of dendritic cells as a possible mechanism of negative regulation of T lymphocytes in pulmonary tuberculosis.

Sakhno LV, Tikhonova MA, Tyrinova TV, Leplina OY, Shevela EY, Nikonov SD, Zhdanov OA, Ostanin AA, Chernykh ER.

Clin Dev Immunol. 2012;2012:628635. doi: 10.1155/2012/628635. Epub 2012 Sep 29.

19.

Cytolytic peptide fragments of Cyt1Aa from Bacillus thuringiensis subsp. israelensis.

Nisnevitch M, Nikonov S, Nitzan Y.

Cell Biochem Biophys. 2013 Mar;65(2):121-7. doi: 10.1007/s12013-012-9405-7.

PMID:
22875467
20.

High-resolution crystal structure of the isolated ribosomal L1 stalk.

Tishchenko S, Gabdulkhakov A, Nevskaya N, Sarskikh A, Kostareva O, Nikonova E, Sycheva A, Moshkovskii S, Garber M, Nikonov S.

Acta Crystallogr D Biol Crystallogr. 2012 Aug;68(Pt 8):1051-7. doi: 10.1107/S0907444912020136. Epub 2012 Jul 17.

PMID:
22868771
21.

Intrafibrillar silicification of collagen scaffolds for sustained release of stem cell homing chemokine in hard tissue regeneration.

Niu LN, Jiao K, Qi YP, Nikonov S, Yiu CK, Arola DD, Gong SQ, El-Marakby A, Carrilho MR, Hamrick MW, Hargreaves KM, Diogenes A, Chen JH, Pashley DH, Tay FR.

FASEB J. 2012 Nov;26(11):4517-29. doi: 10.1096/fj.12-210211. Epub 2012 Aug 2.

22.

Effects of an experimental calcium aluminosilicate cement on the viability of murine odontoblast-like cells.

Wei W, Qi YP, Nikonov SY, Niu LN, Messer RL, Mao J, Primus CM, Pashley DH, Tay FR.

J Endod. 2012 Jul;38(7):936-42. doi: 10.1016/j.joen.2012.03.020. Epub 2012 May 3.

PMID:
22703657
23.

An S-opsin knock-in mouse (F81Y) reveals a role for the native ligand 11-cis-retinal in cone opsin biosynthesis.

Insinna C, Daniele LL, Davis JA, Larsen DD, Kuemmel C, Wang J, Nikonov SS, Knox BE, Pugh EN Jr.

J Neurosci. 2012 Jun 6;32(23):8094-104. doi: 10.1523/JNEUROSCI.0131-12.2012.

24.

Quaternary ammonium silane-functionalized, methacrylate resin composition with antimicrobial activities and self-repair potential.

Gong SQ, Niu LN, Kemp LK, Yiu CK, Ryou H, Qi YP, Blizzard JD, Nikonov S, Brackett MG, Messer RL, Wu CD, Mao J, Bryan Brister L, Rueggeberg FA, Arola DD, Pashley DH, Tay FR.

Acta Biomater. 2012 Sep;8(9):3270-82. doi: 10.1016/j.actbio.2012.05.031. Epub 2012 May 29.

25.

Effects of calcium silicate-based materials on the flexural properties of dentin.

Sawyer AN, Nikonov SY, Pancio AK, Niu LN, Agee KA, Loushine RJ, Weller RN, Pashley DH, Tay FR.

J Endod. 2012 May;38(5):680-3. doi: 10.1016/j.joen.2011.12.036. Epub 2012 Jan 24.

PMID:
22515902
26.

Structural analysis of interdomain mobility in ribosomal L1 proteins.

Tishchenko S, Nikonova E, Kostareva O, Gabdulkhakov A, Piendl W, Nevskaya N, Garber M, Nikonov S.

Acta Crystallogr D Biol Crystallogr. 2011 Dec;67(Pt 12):1023-7. doi: 10.1107/S0907444911043435. Epub 2011 Nov 5.

PMID:
22120739
27.

High-resolution crystal structure of spectrin SH3 domain fused with a proline-rich peptide.

Gushchina LV, Gabdulkhakov AG, Nikonov SV, Filimonov VV.

J Biomol Struct Dyn. 2011 Dec;29(3):485-95.

PMID:
22066535
28.

Imaging light responses of targeted neuron populations in the rodent retina.

Borghuis BG, Tian L, Xu Y, Nikonov SS, Vardi N, Zemelman BV, Looger LL.

J Neurosci. 2011 Feb 23;31(8):2855-67. doi: 10.1523/JNEUROSCI.6064-10.2011.

29.

A mouse M-opsin monochromat: retinal cone photoreceptors have increased M-opsin expression when S-opsin is knocked out.

Daniele LL, Insinna C, Chance R, Wang J, Nikonov SS, Pugh EN Jr.

Vision Res. 2011 Feb 23;51(4):447-58. doi: 10.1016/j.visres.2010.12.017. Epub 2011 Jan 8.

30.

Disruption of shape complementarity in the ribosomal protein L1-RNA contact region does not hinder specific recognition of the RNA target site.

Kostareva O, Tishchenko S, Nikonova E, Kljashtorny V, Nevskaya N, Nikulin A, Sycheva A, Moshkovskii S, Piendl W, Garber M, Nikonov S.

J Mol Recognit. 2011 Jul-Aug;24(4):524-32. doi: 10.1002/jmr.1063. Epub 2010 Aug 25.

PMID:
20740692
31.

The structures of mutant forms of Hfq from Pseudomonas aeruginosa reveal the importance of the conserved His57 for the protein hexamer organization.

Moskaleva O, Melnik B, Gabdulkhakov A, Garber M, Nikonov S, Stolboushkina E, Nikulin A.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jul 1;66(Pt 7):760-4. doi: 10.1107/S1744309110017331. Epub 2010 Jun 23.

32.

Structure of a two-domain N-terminal fragment of ribosomal protein L10 from Methanococcus jannaschii reveals a specific piece of the archaeal ribosomal stalk.

Kravchenko O, Mitroshin I, Nikonov S, Piendl W, Garber M.

J Mol Biol. 2010 Jun 4;399(2):214-20. doi: 10.1016/j.jmb.2010.04.017. Epub 2010 Apr 24. Review.

PMID:
20399793
33.

Type 3 deiodinase, a thyroid-hormone-inactivating enzyme, controls survival and maturation of cone photoreceptors.

Ng L, Lyubarsky A, Nikonov SS, Ma M, Srinivas M, Kefas B, St Germain DL, Hernandez A, Pugh EN Jr, Forrest D.

J Neurosci. 2010 Mar 3;30(9):3347-57. doi: 10.1523/JNEUROSCI.5267-09.2010.

34.

[Efficiency of lymphotropic intermittent chemotherapy in the complex treatment of patients with progressive pulmonary tuberculosis].

Lysov AV, Nikonov SD, Kazakov AV, Red'kin IuV, Gaponenko GE, Burkova IV.

Tuberk Biolezni Legkih. 2009;(7):28-34. Russian.

PMID:
19697853
35.

[Compression syndromes in the disc-radicular conflict in patients with intervertebral disc lesion].

Sitel' AB, Kuz'minov KO, Kanaev SP, Nikonov SV, Beliakov VV.

Zh Nevrol Psikhiatr Im S S Korsakova. 2009;109(6):24-6. Russian.

PMID:
19672222
36.

Structural and thermodynamic studies of Bergerac-SH3 chimeras.

Gushchina LV, Gabdulkhakov AG, Nikonov SV, Mateo PL, Filimonov VV.

Biophys Chem. 2009 Feb;139(2-3):106-15. doi: 10.1016/j.bpc.2008.10.011. Epub 2008 Nov 9.

PMID:
19042078
37.

Domain II of Thermus thermophilus ribosomal protein L1 hinders recognition of its mRNA.

Tishchenko S, Kljashtorny V, Kostareva O, Nevskaya N, Nikulin A, Gulak P, Piendl W, Garber M, Nikonov S.

J Mol Biol. 2008 Nov 7;383(2):301-5. doi: 10.1016/j.jmb.2008.08.058. Epub 2008 Aug 29.

PMID:
18778715
38.

Mouse cones require an arrestin for normal inactivation of phototransduction.

Nikonov SS, Brown BM, Davis JA, Zuniga FI, Bragin A, Pugh EN Jr, Craft CM.

Neuron. 2008 Aug 14;59(3):462-74. doi: 10.1016/j.neuron.2008.06.011.

39.

Crystal structure of the intact archaeal translation initiation factor 2 demonstrates very high conformational flexibility in the alpha- and beta-subunits.

Stolboushkina E, Nikonov S, Nikulin A, Bläsi U, Manstein DJ, Fedorov R, Garber M, Nikonov O.

J Mol Biol. 2008 Oct 10;382(3):680-91. doi: 10.1016/j.jmb.2008.07.039. Epub 2008 Jul 22.

PMID:
18675278
40.

Autologous bone marrow cells in the treatment of cirrhosis of the liver.

Chernykh ER, Starostina NM, Paltsev AI, Leplina OY, Shevela EY, Shipunov MV, Selihova YB, Kulagin AD, Lisukov IA, Nikonov SD, Ostanin AA, Kozlov VA.

Bull Exp Biol Med. 2007 Oct;144(4):640-5.

PMID:
18642729
41.

Three-dimensional structures of L-asparaginase from Erwinia carotovora complexed with aspartate and glutamate.

Kravchenko OV, Kislitsin YA, Popov AN, Nikonov SV, Kuranova IP.

Acta Crystallogr D Biol Crystallogr. 2008 Mar;64(Pt 3):248-56. doi: 10.1107/S0907444907065766. Epub 2008 Feb 20.

PMID:
18323619
42.

High-resolution structure of methionine gamma-lyase from Citrobacter freundii.

Nikulin A, Revtovich S, Morozova E, Nevskaya N, Nikonov S, Garber M, Demidkina T.

Acta Crystallogr D Biol Crystallogr. 2008 Feb;64(Pt 2):211-8. doi: 10.1107/S0907444907065390. Epub 2008 Jan 16.

PMID:
18219122
43.

Use of interferon-alpha-induced dendritic cells in the therapy of patients with malignant brain gliomas.

Leplina OY, Stupak VV, Kozlov YP, Pendyurin IV, Nikonov SD, Tikhonova MA, Sycheva NV, Ostanin AA, Chernykh ER.

Bull Exp Biol Med. 2007 Apr;143(4):528-34.

PMID:
18214316
44.

Domain I of ribosomal protein L1 is sufficient for specific RNA binding.

Tishchenko S, Nikonova E, Kljashtorny V, Kostareva O, Nevskaya N, Piendl W, Davydova N, Streltsov V, Garber M, Nikonov S.

Nucleic Acids Res. 2007;35(21):7389-95. Epub 2007 Oct 25.

45.

[Crystal structures of mutant ribosomal proteins L1].

Nikonova EIu, Volchkov SA, Kliashtornyĭ VG, Tishchenko SV, Kostareva OS, Nevskaia NA, Nikonov OS, Gabdulkhakov AG, Nikulin AD, Davydova NL, Strel'tsov VA, Garber MB, Nikonov SV.

Mol Biol (Mosk). 2007 Jul-Aug;41(4):688-96. Russian.

PMID:
17936990
46.

New insights into the interactions of the translation initiation factor 2 from archaea with guanine nucleotides and initiator tRNA.

Nikonov O, Stolboushkina E, Nikulin A, Hasenöhrl D, Bläsi U, Manstein DJ, Fedorov R, Garber M, Nikonov S.

J Mol Biol. 2007 Oct 19;373(2):328-36. Epub 2007 Aug 2.

PMID:
17825838
47.

[Characteristics of A-interferon-generated dendritic cells in patients with pulmonary tuberculosis].

Sakhno LV, Leplina OIu, Tikhonova MA, Raspaĭ ZhM, Gileva IP, Nikonov SD, Zhdanov OA, Ostanin AA, Chernykh ER.

Probl Tuberk Bolezn Legk. 2007;(3):42-6. Russian.

PMID:
17500228
48.

Structure of the ribosomal protein L1-mRNA complex at 2.1 A resolution: common features of crystal packing of L1-RNA complexes.

Tishchenko S, Nikonova E, Nikulin A, Nevskaya N, Volchkov S, Piendl W, Garber M, Nikonov S.

Acta Crystallogr D Biol Crystallogr. 2006 Dec;62(Pt 12):1545-54. Epub 2006 Nov 23.

PMID:
17139090
49.

[Interactions of ribosomal protein L1 with ribosomal and messenger RNAs].

Tishchenko SV, Nikonova EIu, Nevskaia NA, Nikonov OS, Garber MB, Nikonov SV.

Mol Biol (Mosk). 2006 Jul-Aug;40(4):650-7. Review. Russian.

PMID:
16913224
50.

Physiological features of the S- and M-cone photoreceptors of wild-type mice from single-cell recordings.

Nikonov SS, Kholodenko R, Lem J, Pugh EN Jr.

J Gen Physiol. 2006 Apr;127(4):359-74.

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