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Items: 1 to 50 of 114

1.

Atomic force microscopic image data of botulinum neurotoxin complexes with different molecular sizes.

Miyashita SI, Sagane Y, Uchino T, Karatsu S, Hosoya K, Huang I, Niwa K, Watanabe T, Niimura Y, Suzuki T.

Data Brief. 2019 Jun 25;25:104193. doi: 10.1016/j.dib.2019.104193. eCollection 2019 Aug.

2.
3.

Free flavins accelerate release of ferrous iron from iron storage proteins by both free flavin-dependent and -independent ferric reductases in Escherichia coli.

Satoh J, Kimata S, Nakamoto S, Ishii T, Tanaka E, Yumoto S, Takeda K, Yoshimura E, Kanesaki Y, Ishige T, Tanaka K, Abe A, Kawasaki S, Niimura Y.

J Gen Appl Microbiol. 2019 Jul 5. doi: 10.2323/jgam.2019.03.001. [Epub ahead of print]

4.

Metabolism of Odorant Molecules in Human Nasal/Oral Cavity Affects the Odorant Perception.

Ijichi C, Wakabayashi H, Sugiyama S, Ihara Y, Nogi Y, Nagashima A, Ihara S, Niimura Y, Shimizu Y, Kondo K, Touhara K.

Chem Senses. 2019 Sep 7;44(7):465-481. doi: 10.1093/chemse/bjz041.

PMID:
31254383
5.

Purified thioredoxin reductase from O2-sensitive Bifidobacterium bifidum degrades H2O2 by interacting with alkyl hydroperoxide reductase.

Satoh T, Todoroki M, Kobayashi K, Niimura Y, Kawasaki S.

Anaerobe. 2019 Jun;57:45-54. doi: 10.1016/j.anaerobe.2019.03.012. Epub 2019 Mar 15.

PMID:
30880149
6.

Evaporation of droplet in mid-air: Pure and binary droplets in single-axis acoustic levitator.

Niimura Y, Hasegawa K.

PLoS One. 2019 Feb 27;14(2):e0212074. doi: 10.1371/journal.pone.0212074. eCollection 2019.

7.

High-precision nanofabrication technology for metal nanoparticle ensembles using nanotemplate-guided thermal dewetting.

Niimura Y, Oonishi N, Okubo K, Le Thi Ngoc L, Carlen ET.

Nanoscale. 2018 Aug 2;10(30):14390-14394. doi: 10.1039/c8nr01480a.

PMID:
30027967
8.

O2-inducible H2O2-forming NADPH oxidase is responsible for the hyper O2 sensitivity of Bifidobacterium longum subsp. infantis.

Tanaka K, Satoh T, Kitahara J, Uno S, Nomura I, Kano Y, Suzuki T, Niimura Y, Kawasaki S.

Sci Rep. 2018 Jul 16;8(1):10750. doi: 10.1038/s41598-018-29030-4.

9.

Intracellular free flavin and its associated enzymes participate in oxygen and iron metabolism in Amphibacillus xylanus lacking a respiratory chain.

Kimata S, Mochizuki D, Satoh J, Kitano K, Kanesaki Y, Takeda K, Abe A, Kawasaki S, Niimura Y.

FEBS Open Bio. 2018 May 9;8(6):947-961. doi: 10.1002/2211-5463.12425. eCollection 2018 Jun.

10.

Acceleration of Olfactory Receptor Gene Loss in Primate Evolution: Possible Link to Anatomical Change in Sensory Systems and Dietary Transition.

Niimura Y, Matsui A, Touhara K.

Mol Biol Evol. 2018 Jun 1;35(6):1437-1450. doi: 10.1093/molbev/msy042.

PMID:
29659972
11.

A long-range cis-regulatory element for class I odorant receptor genes.

Iwata T, Niimura Y, Kobayashi C, Shirakawa D, Suzuki H, Enomoto T, Touhara K, Yoshihara Y, Hirota J.

Nat Commun. 2017 Oct 12;8(1):885. doi: 10.1038/s41467-017-00870-4.

12.

Comparative genomic analysis of translation initiation mechanisms for genes lacking the Shine-Dalgarno sequence in prokaryotes.

Nakagawa S, Niimura Y, Gojobori T.

Nucleic Acids Res. 2017 Apr 20;45(7):3922-3931. doi: 10.1093/nar/gkx124.

13.

Identification of sirtuin and its target as the ribosomal protein S4 in Lactobacillus paracasei.

Atarashi H, Kawasaki S, Niimura Y, Tanaka N, Okada S, Shiwa Y, Endo A, Nakagawa J.

J Gen Appl Microbiol. 2016;62(2):98-105. doi: 10.2323/jgam.62.98.

14.

Isolation of lactic acid bacteria exhibiting high scavenging activity for environmental hydrogen peroxide from fermented foods and its two scavenging enzymes for hydrogen peroxide.

Watanabe A, Kaneko C, Hamada Y, Takeda K, Kimata S, Matsumoto T, Abe A, Tanaka N, Okada S, Uchino M, Satoh J, Nakagawa J, Niimura Y.

J Gen Appl Microbiol. 2016;62(2):75-82. doi: 10.2323/jgam.62.75.

15.

Ligand Specificity and Evolution of Mammalian Musk Odor Receptors: Effect of Single Receptor Deletion on Odor Detection.

Sato-Akuhara N, Horio N, Kato-Namba A, Yoshikawa K, Niimura Y, Ihara S, Shirasu M, Touhara K.

J Neurosci. 2016 Apr 20;36(16):4482-91. doi: 10.1523/JNEUROSCI.3259-15.2016.

16.

Immunization of A4galt-deficient mice with glycosphingolipids from renal cell cancers resulted in the generation of anti-sulfoglycolipid monoclonal antibodies.

Ando R, Tokuda N, Yamamoto T, Ikeda K, Hashimoto N, Taguchi R, Fan X, Furukawa K, Niimura Y, Suzuki A, Goto M, Furukawa K.

Glycoconj J. 2016 Apr;33(2):169-80. doi: 10.1007/s10719-016-9654-6. Epub 2016 Feb 16.

PMID:
26883028
17.

Cucumis sativus secretes 4'-ketoriboflavin under iron-deficient conditions.

Satoh J, Koshino H, Sekino K, Ito S, Katsuta R, Takeda K, Yoshimura E, Shinmachi F, Kawasaki S, Niimura Y, Nukada T.

Biosci Biotechnol Biochem. 2016;80(2):363-7. doi: 10.1080/09168451.2015.1095070. Epub 2015 Nov 2.

PMID:
26523955
19.

NADH oxidase and alkyl hydroperoxide reductase subunit C (peroxiredoxin) from Amphibacillus xylanus form an oligomeric assembly.

Arai T, Kimata S, Mochizuki D, Hara K, Zako T, Odaka M, Yohda M, Arisaka F, Kanamaru S, Matsumoto T, Yajima S, Sato J, Kawasaki S, Niimura Y.

FEBS Open Bio. 2015 Feb 7;5:124-31. doi: 10.1016/j.fob.2015.01.005. eCollection 2015.

20.

Involvement of GSK3 in the formation of the leading process and migration of neurons from the embryonic rat medial ganglionic eminence in vitro.

Niimura Y, Aminaka Y, Hayashi K.

Neuroreport. 2015 Mar 4;26(4):179-85. doi: 10.1097/WNR.0000000000000333.

PMID:
25646586
21.
22.

Adaptive response of Amphibacillus xylanus to normal aerobic and forced oxidative stress conditions.

Mochizuki D, Arai T, Asano M, Sasakura N, Watanabe T, Shiwa Y, Nakamura S, Katano Y, Fujinami S, Fujita N, Abe A, Sato J, Nakagawa J, Niimura Y.

Microbiology. 2014 Feb;160(Pt 2):340-52. doi: 10.1099/mic.0.068726-0. Epub 2013 Dec 4.

PMID:
24307665
23.

Identification of chemosensory receptor genes from vertebrate genomes.

Niimura Y.

Methods Mol Biol. 2013;1068:95-105. doi: 10.1007/978-1-62703-619-1_7.

PMID:
24014356
24.

The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan.

Wang Z, Pascual-Anaya J, Zadissa A, Li W, Niimura Y, Huang Z, Li C, White S, Xiong Z, Fang D, Wang B, Ming Y, Chen Y, Zheng Y, Kuraku S, Pignatelli M, Herrero J, Beal K, Nozawa M, Li Q, Wang J, Zhang H, Yu L, Shigenobu S, Wang J, Liu J, Flicek P, Searle S, Wang J, Kuratani S, Yin Y, Aken B, Zhang G, Irie N.

Nat Genet. 2013 Jun;45(6):701-706. doi: 10.1038/ng.2615. Epub 2013 Apr 28. Erratum in: Nat Genet. 2014 Jun;46(6):657.

25.

Identification of olfactory receptor genes from mammalian genome sequences.

Niimura Y.

Methods Mol Biol. 2013;1003:39-49. doi: 10.1007/978-1-62703-377-0_3.

PMID:
23585032
26.

A methodical microarray design enables surveying of expression of a broader range of genes in Ciona intestinalis.

Matsumae H, Hamada M, Fujie M, Niimura Y, Tanaka H, Kawashima T.

Gene. 2013 Apr 25;519(1):82-90. doi: 10.1016/j.gene.2013.01.042. Epub 2013 Feb 4.

PMID:
23388151
27.

Purification and characterization of oxygen-inducible haem catalase from oxygen-tolerant Bifidobacterium asteroides.

Hayashi K, Maekawa I, Tanaka K, Ijyuin S, Shiwa Y, Suzuki I, Niimura Y, Kawasaki S.

Microbiology. 2013 Jan;159(Pt 1):89-95. doi: 10.1099/mic.0.059741-0. Epub 2012 Nov 15.

PMID:
23154971
28.

Chloroplast NADPH-dependent thioredoxin reductase from Chlorella vulgaris alleviates environmental stresses in yeast together with 2-Cys peroxiredoxin.

Machida T, Ishibashi A, Kirino A, Sato J, Kawasaki S, Niimura Y, Honjoh K, Miyamoto T.

PLoS One. 2012;7(9):e45988. doi: 10.1371/journal.pone.0045988. Epub 2012 Sep 24.

29.
30.

Is novel signal transducer sulfur oxide involved in the redox cycle of persulfide at the catalytic site cysteine in a stable reaction intermediate of mercaptopyruvate sulfurtransferase?

Nagahara N, Nirasawa T, Yoshii T, Niimura Y.

Antioxid Redox Signal. 2012 Apr 15;16(8):747-53. doi: 10.1089/ars.2011.4468. Epub 2012 Jan 11.

PMID:
22149235
31.

hzAnalyzer: detection, quantification, and visualization of contiguous homozygosity in high-density genotyping datasets.

Johnson TA, Niimura Y, Tanaka H, Nakamura Y, Tsunoda T.

Genome Biol. 2011;12(3):R21. doi: 10.1186/gb-2011-12-3-r21. Epub 2011 Mar 11.

32.

Synechocystis ferredoxin-NADP(+) oxidoreductase is capable of functioning as ferric reductase and of driving the Fenton reaction in the absence or presence of free flavin.

Sato J, Takeda K, Nishiyama R, Watanabe T, Abo M, Yoshimura E, Nakagawa J, Abe A, Kawasaki S, Niimura Y.

Biometals. 2011 Apr;24(2):311-21. doi: 10.1007/s10534-010-9397-y. Epub 2011 Jan 8.

PMID:
21221720
33.
34.

Lactobacillus ozensis sp. nov., isolated from mountain flowers.

Kawasaki S, Kurosawa K, Miyazaki M, Sakamoto M, Ohkuma M, Niimura Y.

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2435-8. doi: 10.1099/ijs.0.027847-0. Epub 2010 Nov 12.

PMID:
21075903
35.

Medium osmolarity-dependent biosynthesis of renal cellular sulfoglycolipids is mediated by the MAPK signaling pathway.

Niimura Y, Moue T, Takahashi N, Nagai K.

Biochim Biophys Acta. 2010 Oct;1801(10):1155-62. doi: 10.1016/j.bbalip.2010.06.010. Epub 2010 Jul 7.

PMID:
20619354
36.

Lactobacillus floricola sp. nov., lactic acid bacteria isolated from mountain flowers.

Kawasaki S, Kurosawa K, Miyazaki M, Yagi C, Kitajima Y, Tanaka S, Irisawa T, Okada S, Sakamoto M, Ohkuma M, Niimura Y.

Int J Syst Evol Microbiol. 2011 Jun;61(Pt 6):1356-9. doi: 10.1099/ijs.0.022988-0. Epub 2010 Jul 2.

PMID:
20601482
37.

Chlorella vulgaris aldehyde reductase is capable of functioning as ferric reductase and of driving the fenton reaction in the presence of free flavin.

Sato J, Takeda K, Nishiyama R, Fusayama K, Arai T, Sato T, Watanabe T, Abe A, Nakagawa J, Kawasaki S, Niimura Y.

Biosci Biotechnol Biochem. 2010;74(4):854-7.

38.

Escherichia coli ferredoxin-NADP+ reductase and oxygen-insensitive nitroreductase are capable of functioning as ferric reductase and of driving the Fenton reaction.

Takeda K, Sato J, Goto K, Fujita T, Watanabe T, Abo M, Yoshimura E, Nakagawa J, Abe A, Kawasaki S, Niimura Y.

Biometals. 2010 Aug;23(4):727-37. doi: 10.1007/s10534-010-9339-8. Epub 2010 Apr 21.

PMID:
20407804
39.

Dynamic evolution of translation initiation mechanisms in prokaryotes.

Nakagawa S, Niimura Y, Miura K, Gojobori T.

Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6382-7. doi: 10.1073/pnas.1002036107. Epub 2010 Mar 22.

40.

Modification of sphingoglycolipids and sulfolipids in kidney cell lines under heat stress: activation of monohexosylceramide synthesis as a ceramide scavenger.

Niimura Y, Moue T, Takahashi N, Nagai K.

Glycobiology. 2010 Jun;20(6):710-7. doi: 10.1093/glycob/cwq018. Epub 2010 Feb 15.

PMID:
20157020
41.

Degeneration of olfactory receptor gene repertories in primates: no direct link to full trichromatic vision.

Matsui A, Go Y, Niimura Y.

Mol Biol Evol. 2010 May;27(5):1192-200. doi: 10.1093/molbev/msq003. Epub 2010 Jan 8.

PMID:
20061342
42.

Crystallization and preliminary X-ray analysis of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum.

Nishikawa K, Shomura Y, Kawasaki S, Niimura Y, Higuchi Y.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jan 1;66(Pt 1):23-5. doi: 10.1107/S1744309109047162. Epub 2009 Dec 25.

44.

Crystal structure of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum: a key component of the dioxygen scavenging system in obligatory anaerobes.

Nishikawa K, Shomura Y, Kawasaki S, Niimura Y, Higuchi Y.

Proteins. 2010 Mar;78(4):1066-70. doi: 10.1002/prot.22650. No abstract available.

PMID:
20017214
45.

Structure analysis of the flavoredoxin from Desulfovibrio vulgaris Miyazaki F reveals key residues that discriminate the functions and properties of the flavin reductase family.

Shibata N, Ueda Y, Takeuchi D, Haruyama Y, Kojima S, Sato J, Niimura Y, Kitamura M, Higuchi Y.

FEBS J. 2009 Sep;276(17):4840-53.

46.

Development and application of a system for seminolipid metabolism using mouse seminiferous tubules.

Nagai K, Tadano-Aritomi K, Niimura Y, Ishizuka I.

Glycoconj J. 2010 Jan;27(1):181-7. doi: 10.1007/s10719-009-9250-0. Epub 2009 Jul 7.

PMID:
19582571
47.

Taxonomical and physiological comparisons of the three species of the genus Amphibacillus.

Arai T, Yanahashi S, Sato J, Sato T, Ishikawa M, Koizumi Y, Kawasaki S, Niimura Y, Nakagawa J.

J Gen Appl Microbiol. 2009 Apr;55(2):155-62.

48.

Sodium acetate enhances hydrogen peroxide production in Weissella cibaria.

Endo A, Futagawa-Endo Y, Kawasaki S, Dicks LM, Niimura Y, Okada S.

Lett Appl Microbiol. 2009 Jul;49(1):136-41. doi: 10.1111/j.1472-765X.2009.02633.x. Epub 2009 Apr 24.

49.

Expression pattern of a chloroplast NADPH-dependent thioredoxin reductase in Chlorella vulgaris during hardening and its interaction with 2-Cys peroxiredoxin.

Machida T, Kato E, Ishibashi A, Sato J, Kawasaki S, Niimura Y, Honjoh K, Miyamoto T.

Biosci Biotechnol Biochem. 2009 Mar 23;73(3):695-701. Epub 2009 Mar 7.

50.

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