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Items: 1 to 50 of 66

1.

Status of the neutron time-of-flight single-crystal diffraction data-processing software STARGazer.

Yano N, Yamada T, Hosoya T, Ohhara T, Tanaka I, Niimura N, Kusaka K.

Acta Crystallogr D Struct Biol. 2018 Nov 1;74(Pt 11):1041-1052. doi: 10.1107/S2059798318012081. Epub 2018 Oct 29.

2.

Cryoprotectant-free high-pressure cooling and dynamic nuclear polarization for more sensitive detection of hydrogen in neutron protein crystallography.

Tanaka I, Komatsuzaki N, Yue WX, Chatake T, Kusaka K, Niimura N, Miura D, Iwata T, Miyachi Y, Nukazuka G, Matsuda H.

Acta Crystallogr D Struct Biol. 2018 Aug 1;74(Pt 8):787-791. doi: 10.1107/S2059798318005028. Epub 2018 Jul 17.

3.

"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.

Nakamura A, Ishida T, Kusaka K, Yamada T, Fushinobu S, Tanaka I, Kaneko S, Ohta K, Tanaka H, Inaka K, Higuchi Y, Niimura N, Samejima M, Igarashi K.

Sci Adv. 2015 Aug 21;1(7):e1500263. doi: 10.1126/sciadv.1500263. eCollection 2015 Aug.

4.

Protonation State and Hydration of Bisphosphonate Bound to Farnesyl Pyrophosphate Synthase.

Yokoyama T, Mizuguchi M, Ostermann A, Kusaka K, Niimura N, Schrader TE, Tanaka I.

J Med Chem. 2015 Sep 24;58(18):7549-56. doi: 10.1021/acs.jmedchem.5b01147. Epub 2015 Sep 4.

PMID:
26314394
5.

Insights into the Proton Transfer Mechanism of a Bilin Reductase PcyA Following Neutron Crystallography.

Unno M, Ishikawa-Suto K, Kusaka K, Tamada T, Hagiwara Y, Sugishima M, Wada K, Yamada T, Tomoyori K, Hosoya T, Tanaka I, Niimura N, Kuroki R, Inaka K, Ishihara M, Fukuyama K.

J Am Chem Soc. 2015 Apr 29;137(16):5452-60. doi: 10.1021/jacs.5b00645. Epub 2015 Apr 15.

PMID:
25872660
6.

Crystallization and preliminary neutron diffraction experiment of human farnesyl pyrophosphate synthase complexed with risedronate.

Yokoyama T, Ostermann A, Mizuguchi M, Niimura N, Schrader TE, Tanaka I.

Acta Crystallogr F Struct Biol Commun. 2014 Apr;70(Pt 4):470-2. doi: 10.1107/S2053230X14004087. Epub 2014 Mar 25.

7.

Physical properties, structure, and shape of radioactive Cs from the Fukushima Daiichi Nuclear Power Plant accident derived from soil, bamboo and shiitake mushroom measurements.

Niimura N, Kikuchi K, Tuyen ND, Komatsuzaki M, Motohashi Y.

J Environ Radioact. 2015 Jan;139:234-239. doi: 10.1016/j.jenvrad.2013.12.020. Epub 2014 Jan 18.

8.

Evaluation of performance for IBARAKI biological crystal diffractometer iBIX with new detectors.

Kusaka K, Hosoya T, Yamada T, Tomoyori K, Ohhara T, Katagiri M, Kurihara K, Tanaka I, Niimura N.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):994-8. doi: 10.1107/S0909049513021845. Epub 2013 Oct 11.

9.

Fundamental studies for the proton polarization technique in neutron protein crystallography.

Tanaka I, Kusaka K, Chatake T, Niimura N.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):958-61. doi: 10.1107/S0909049513020815. Epub 2013 Oct 2.

10.

Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis.

Nakamura A, Ishida T, Fushinobu S, Kusaka K, Tanaka I, Inaka K, Higuchi Y, Masaki M, Ohta K, Kaneko S, Niimura N, Igarashi K, Samajima M.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):859-63. doi: 10.1107/S0909049513020943. Epub 2013 Sep 25.

11.

Hydrogen-bond network and pH sensitivity in human transthyretin.

Yokoyama T, Mizuguchi M, Nabeshima Y, Kusaka K, Yamada T, Hosoya T, Ohhara T, Kurihara K, Tanaka I, Niimura N.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):834-7. doi: 10.1107/S090904951302075X. Epub 2013 Sep 29.

12.

Neutron and X-ray crystallographic analysis of Achromobacter protease I at pD 8.0: protonation states and hydration structure in the free-form.

Ohnishi Y, Yamada T, Kurihara K, Tanaka I, Sakiyama F, Masaki T, Niimura N.

Biochim Biophys Acta. 2013 Aug;1834(8):1642-7. doi: 10.1016/j.bbapap.2013.05.012. Epub 2013 May 25.

PMID:
23714114
13.

Neutron and X-ray crystallographic analysis of the human α-thrombin-bivalirudin complex at pD 5.0: protonation states and hydration structure of the enzyme-product complex.

Yamada T, Kurihara K, Ohnishi Y, Tamada T, Tomoyori K, Masumi K, Tanaka I, Kuroki R, Niimura N.

Biochim Biophys Acta. 2013 Aug;1834(8):1532-8. doi: 10.1016/j.bbapap.2013.05.014. Epub 2013 May 25.

PMID:
23712263
14.

Cyclization-carbonylation-cyclization coupling reaction of propargyl ureas with palladium(II)-bisoxazoline catalyst.

Kusakabe T, Kawaguchi K, Kawamura M, Niimura N, Shen R, Takayama H, Kato K.

Molecules. 2012 Aug 2;17(8):9220-30. doi: 10.3390/molecules17089220.

15.

Quaternary structure, aggregation and cytotoxicity of transthyretin.

Mizuguchi M, Yokoyama T, Nabeshima Y, Kawano K, Tanaka I, Niimura N.

Amyloid. 2012 Jun;19 Suppl 1:5-7. doi: 10.3109/13506129.2012.666510. Epub 2012 Mar 23.

PMID:
22439750
16.

Hydrogen-bond network and pH sensitivity in transthyretin: Neutron crystal structure of human transthyretin.

Yokoyama T, Mizuguchi M, Nabeshima Y, Kusaka K, Yamada T, Hosoya T, Ohhara T, Kurihara K, Tomoyori K, Tanaka I, Niimura N.

J Struct Biol. 2012 Feb;177(2):283-90. doi: 10.1016/j.jsb.2011.12.022. Epub 2012 Jan 11.

PMID:
22248451
17.

X-ray and neutron protein crystallographic analysis of the trypsin-BPTI complex.

Kawamura K, Yamada T, Kurihara K, Tamada T, Kuroki R, Tanaka I, Takahashi H, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2011 Feb;67(Pt 2):140-8. doi: 10.1107/S0907444910053382. Epub 2011 Jan 15.

PMID:
21245536
18.

Neutron structure analysis using the IBARAKI biological crystal diffractometer (iBIX) at J-PARC.

Tanaka I, Kusaka K, Hosoya T, Niimura N, Ohhara T, Kurihara K, Yamada T, Ohnishi Y, Tomoyori K, Yokoyama T.

Acta Crystallogr D Biol Crystallogr. 2010 Nov;66(Pt 11):1194-7. doi: 10.1107/S0907444910033020. Epub 2010 Oct 20.

PMID:
21041936
19.

[Beginning of use of a new biological neutron diffractometer (iBIX) in J-PARC].

Tanaka I, Kusaka K, Hosoya T, Ohhara T, Kurihara K, Niimura N.

Yakugaku Zasshi. 2010 May;130(5):665-70. Review. Japanese.

20.

A neutron crystallographic analysis of T6 porcine insulin at 2.1 A resolution.

Iwai W, Yamada T, Kurihara K, Ohnishi Y, Kobayashi Y, Tanaka I, Takahashi H, Kuroki R, Tamada T, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2009 Oct;65(Pt 10):1042-50. doi: 10.1107/S090744490902770X. Epub 2009 Sep 16.

21.

A neutron crystallographic analysis of phosphate-free ribonuclease A at 1.7 A resolution.

Yagi D, Yamada T, Kurihara K, Ohnishi Y, Yamashita M, Tamada T, Tanaka I, Kuroki R, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2009 Sep;65(Pt 9):892-9. doi: 10.1107/S0907444909018885. Epub 2009 Aug 6.

PMID:
19690366
22.

New sources and instrumentation for neutrons in biology.

Teixeira SC, Ankner J, Bellissent-Funel MC, Bewley R, Blakeley MP, Coates L, Dahint R, Dalgliesh R, Dencher N, Dhont J, Fischer P, Forsyth VT, Fragneto G, Frick B, Geue T, Gilles R, Gutberlet T, Haertlein M, Hauß T, Häußler W, Heller WT, Herwig K, Holderer O, Juranyi F, Kampmann R, Knott R, Kohlbrecher J, Kreuger S, Langan P, Lechner R, Lynn G, Majkrzak C, May R, Meilleur F, Mo Y, Mortensen K, Myles DA, Natali F, Neylon C, Niimura N, Ollivier J, Ostermann A, Peters J, Pieper J, Rühm A, Schwahn D, Shibata K, Soper AK, Straessle T, Suzuki UI, Tanaka I, Tehei M, Timmins P, Torikai N, Unruh T, Urban V, Vavrin R, Weiss K, Zaccai G.

Chem Phys. 2008;345(2-3):133-151.

23.

Low-barrier hydrogen bond in photoactive yellow protein.

Yamaguchi S, Kamikubo H, Kurihara K, Kuroki R, Niimura N, Shimizu N, Yamazaki Y, Kataoka M.

Proc Natl Acad Sci U S A. 2009 Jan 13;106(2):440-4. doi: 10.1073/pnas.0811882106. Epub 2009 Jan 2.

24.

To flip or not to flip? Assessing the inversion barrier of the tetraphenylene framework with enantiopure 2,15-dideuteriotetraphenylene and 2,7-dimethyltetraphenylene.

Huang H, Stewart T, Gutmann M, Ohhara T, Niimura N, Li YX, Wen JF, Bau R, Wong HN.

J Org Chem. 2009 Jan 2;74(1):359-69. doi: 10.1021/jo802061p.

PMID:
19053607
25.

Structural study of oriental lacquer films during the hardening process.

Niimura N, Miyakoshi T.

Talanta. 2006 Aug 15;70(1):146-52. doi: 10.1016/j.talanta.2005.12.039. Epub 2006 Jan 24.

PMID:
18970743
26.

An abnormal pK(a) value of internal histidine of the insulin molecule revealed by neutron crystallographic analysis.

Ishikawa T, Chatake T, Morimoto Y, Maeda M, Kurihara K, Tanaka I, Niimura N.

Biochem Biophys Res Commun. 2008 Nov 7;376(1):32-5. doi: 10.1016/j.bbrc.2008.08.071. Epub 2008 Aug 24.

PMID:
18725203
27.

Neutron crystallography: opportunities, challenges, and limitations.

Blakeley MP, Langan P, Niimura N, Podjarny A.

Curr Opin Struct Biol. 2008 Oct;18(5):593-600. doi: 10.1016/j.sbi.2008.06.009. Epub 2008 Aug 7. Review.

28.

Crystallization and evaluation of hen egg-white lysozyme crystals for protein pH titration in the crystalline state.

Iwai W, Yagi D, Ishikawa T, Ohnishi Y, Tanaka I, Niimura N.

J Synchrotron Radiat. 2008 May;15(Pt 3):312-5. doi: 10.1107/S0909049507059559. Epub 2008 Apr 18.

29.

Hydrogen bonds of DsrD protein revealed by neutron crystallography.

Chatake T, Higuchi Y, Mizuno N, Tanaka I, Niimura N, Morimoto Y.

J Synchrotron Radiat. 2008 May;15(Pt 3):277-80. doi: 10.1107/S0909049507058979. Epub 2008 Apr 18.

30.

Neutron protein crystallography: beyond the folding structure of biological macromolecules.

Niimura N, Bau R.

Acta Crystallogr A. 2008 Jan;64(Pt 1):12-22. Epub 2007 Dec 21.

PMID:
18156668
31.

Protonation states of buried histidine residues in human deoxyhemoglobin revealed by neutron crystallography.

Chatake T, Shibayama N, Park SY, Kurihara K, Tamada T, Tanaka I, Niimura N, Kuroki R, Morimoto Y.

J Am Chem Soc. 2007 Dec 5;129(48):14840-1. Epub 2007 Nov 9.

PMID:
17990881
32.

Neutron diffraction analysis of deuterium transfer in chiral beta-thiolactam formation in the crystalline state.

Hosoya T, Uekusa H, Ohashi Y, Ohhara T, Tanaka I, Niimura N.

Acta Crystallogr B. 2006 Feb;62(Pt 1):153-60. Epub 2006 Jan 17.

PMID:
16434803
33.

Recent results on hydrogen and hydration in biology studied by neutron macromolecular crystallography.

Niimura N, Arai S, Kurihara K, Chatake T, Tanaka I, Bau R.

Cell Mol Life Sci. 2006 Feb;63(3):285-300. Review.

PMID:
16389451
34.

The hydration structure of a Z-DNA hexameric duplex determined by a neutron diffraction technique.

Chatake T, Tanaka I, Umino H, Arai S, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2005 Aug;61(Pt 8):1088-98. Epub 2005 Jul 20.

PMID:
16041074
35.

Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements.

Arai S, Chatake T, Ohhara T, Kurihara K, Tanaka I, Suzuki N, Fujimoto Z, Mizuno H, Niimura N.

Nucleic Acids Res. 2005 May 24;33(9):3017-24. Print 2005.

36.

Endohedral clusterization of ten water molecules into a "molecular ice"within the hydrophobic pocket of a self-assembled cage.

Yoshizawa M, Kusukawa T, Kawano M, Ohhara T, Tanaka I, Kurihara K, Niimura N, Fujita M.

J Am Chem Soc. 2005 Mar 9;127(9):2798-9.

PMID:
15740084
37.

A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.

Chatake T, Kurihara K, Tanaka I, Tsyba I, Bau R, Jenney FE Jr, Adams MW, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2004 Aug;60(Pt 8):1364-73. Epub 2004 Jul 21.

PMID:
15272158
38.

Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules.

Kurihara K, Tanaka I, Chatake T, Adams MW, Jenney FE Jr, Moiseeva N, Bau R, Niimura N.

Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11215-20. Epub 2004 Jul 22.

39.

Hydrogen and hydration in proteins.

Niimura N, Chatake T, Kurihara K, Maeda M.

Cell Biochem Biophys. 2004;40(3):351-69. Review.

PMID:
15211032
40.

More rapid evaluation of biomacromolecular crystals for diffraction experiments.

Arai S, Chatake T, Suzuki N, Mizuno H, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2004 Jun;60(Pt 6):1032-9. Epub 2004 May 21.

PMID:
15159562
41.

Hydration structures in proteins and neutron diffraction experiment on dissimilatory sul te reductase D (DsrD).

Chatake T, Ostermann A, Kurihara K, Parak FG, Mizuno N, Voordouw G, Higuchi Y, Tanaka I, Niimura N.

J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):72-5. Epub 2003 Nov 28.

PMID:
14646138
42.

A new neutron single-crystal diffractometer dedicated for biological macromolecules (BIX-4).

Kurihara K, Tanaka I, Niimura N, Refai Muslih M, Ostermann A.

J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):68-71. Epub 2003 Nov 28.

PMID:
14646137
43.

Crystallization of a large single crystal of cubic insulin for neutron protein crystallography.

Maeda M, Chatake T, Tanaka I, Ostermann A, Niimura N.

J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):41-4. Epub 2003 Nov 28.

PMID:
14646130
44.

Crystallization and preliminary neutron analysis of the dissimilatory sulfite reductase D (DsrD) protein from the sulfate-reducing bacterium Desulfovibrio vulgaris.

Chatake T, Mizuno N, Voordouw G, Higuchi Y, Arai S, Tanaka I, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2003 Dec;59(Pt 12):2306-9. Epub 2003 Nov 27.

PMID:
14646103
45.

Hydrogen atoms in proteins: positions and dynamics.

Engler N, Ostermann A, Niimura N, Parak FG.

Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10243-8. Epub 2003 Aug 22.

46.

Hydration in proteins observed by high-resolution neutron crystallography.

Chatake T, Ostermann A, Kurihara K, Parak FG, Niimura N.

Proteins. 2003 Feb 15;50(3):516-23.

PMID:
12557193
47.
48.

Hydrogen and deuterium in myoglobin as seen by a neutron structure determination at 1.5 A resolution.

Ostermann A, Tanaka I, Engler N, Niimura N, Parak FG.

Biophys Chem. 2002 Mar 28;95(3):183-93.

PMID:
12062378
49.

Dissolution rate of hen egg-white lysozyme crystal under microgravity.

Niimura N, Kurihara K, Ataka M.

Biol Sci Space. 2001 Oct;15 Suppl:S176.

50.

Crystallization of a large single crystal of a B-DNA decamer for a neutron diffraction experiment by the phase-diagram technique.

Arai S, Chatake T, Minezaki Y, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2002 Jan;58(Pt 1):151-3. Epub 2001 Dec 21.

PMID:
11752796

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