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The Methods Employed in Mass Spectrometric Analysis of Posttranslational Modifications (PTMs) and Protein-Protein Interactions (PPIs).

Yakubu RR, Nieves E, Weiss LM.

Adv Exp Med Biol. 2019;1140:169-198. doi: 10.1007/978-3-030-15950-4_10. Review.


Serum-Mediated Cleavage of Bacillus anthracis Protective Antigen Is a Two-Step Process That Involves a Serum Carboxypeptidase.

Goldman DL, Nieves E, Nakouzi A, Rivera J, Phyu EE, Win TH, Achkar JM, Casadevall A.

mSphere. 2018 Jun 27;3(3). pii: e00091-18. doi: 10.1128/mSphere.00091-18. Print 2018 Jun 27.


Intra-articular clearance of labeled dextrans from naive and arthritic rat knee joints.

Mwangi TK, Berke IM, Nieves EH, Bell RD, Adams SB, Setton LA.

J Control Release. 2018 Aug 10;283:76-83. doi: 10.1016/j.jconrel.2018.05.029. Epub 2018 May 26.


Defensive behaviors of the new mealybug citrus pest, Delottococcus aberiae (Hemiptera: Pseudococcidae), against three generalist parasitoids.

Tena A, Nieves E, Herrero J, Urbaneja A.

J Econ Entomol. 2018 Feb 9;111(1):89-95. doi: 10.1093/jee/tox307.


Upregulation of TET activity with ascorbic acid induces epigenetic modulation of lymphoma cells.

Shenoy N, Bhagat T, Nieves E, Stenson M, Lawson J, Choudhary GS, Habermann T, Nowakowski G, Singh R, Wu X, Verma A, Witzig TE.

Blood Cancer J. 2017 Jul 21;7(7):e587. doi: 10.1038/bcj.2017.65.


STAT3 Expression in Host Myeloid Cells Controls Graft-versus-Host Disease Severity.

Nieves EC, Toubai T, Peltier DC, Oravecz-Wilson K, Liu C, Tamaki H, Sun Y, Reddy P.

Biol Blood Marrow Transplant. 2017 Oct;23(10):1622-1630. doi: 10.1016/j.bbmt.2017.06.018. Epub 2017 Jul 8.


Insecticide Activity of Ageratina jahnii and Ageratina pichinchensis (Asteraceae) against Lutzomyia migonei (Diptera: Psychodidae).

Torres L, Rojas J, Rondón M, Morales A, Nieves E.

Adv Biomed Res. 2017 May 2;6:53. doi: 10.4103/2277-9175.205525. eCollection 2017.


Comparative Monomethylarginine Proteomics Suggests that Protein Arginine Methyltransferase 1 (PRMT1) is a Significant Contributor to Arginine Monomethylation in Toxoplasma gondii.

Yakubu RR, Silmon de Monerri NC, Nieves E, Kim K, Weiss LM.

Mol Cell Proteomics. 2017 Apr;16(4):567-580. doi: 10.1074/mcp.M117.066951. Epub 2017 Jan 31.


Lipophosphoglycans from Leishmania amazonensis Strains Display Immunomodulatory Properties via TLR4 and Do Not Affect Sand Fly Infection.

Nogueira PM, Assis RR, Torrecilhas AC, Saraiva EM, Pessoa NL, Campos MA, Marialva EF, Ríos-Velasquez CM, Pessoa FA, Secundino NF, Rugani JN, Nieves E, Turco SJ, Melo MN, Soares RP.

PLoS Negl Trop Dis. 2016 Aug 10;10(8):e0004848. doi: 10.1371/journal.pntd.0004848. eCollection 2016 Aug.


Identification of cell-specific targets of sumoylation during mouse spermatogenesis.

Xiao Y, Pollack D, Andrusier M, Levy A, Callaway M, Nieves E, Reddi P, Vigodner M.

Reproduction. 2016 Feb;151(2):149-66. doi: 10.1530/REP-15-0239.


The Ubiquitin Proteome of Toxoplasma gondii Reveals Roles for Protein Ubiquitination in Cell-Cycle Transitions.

Silmon de Monerri NC, Yakubu RR, Chen AL, Bradley PJ, Nieves E, Weiss LM, Kim K.

Cell Host Microbe. 2015 Nov 11;18(5):621-33. doi: 10.1016/j.chom.2015.10.014.


Analysis of the Structure and Function of FOX-4 Cephamycinase.

Lefurgy ST, Malashkevich VN, Aguilan JT, Nieves E, Mundorff EC, Biju B, Noel MA, Toro R, Baiwir D, Papp-Wallace KM, Almo SC, Frere JM, Bou G, Bonomo RA.

Antimicrob Agents Chemother. 2015 Nov 2;60(2):717-28. doi: 10.1128/AAC.01887-15. Print 2016 Feb.


Molecular Histochemistry Identifies Peptidomic Organization and Reorganization Along Striatal Projection Units.

Hishimoto A, Nomaru H, Ye K, Nishi A, Lim J, Aguilan JT, Nieves E, Kang G, Angeletti RH, Hiroi N.

Biol Psychiatry. 2016 Mar 1;79(5):415-420. doi: 10.1016/j.biopsych.2015.09.012. Epub 2015 Sep 28.


Laboratory Population Parameters and Field Impact of the Larval Endoparasitoid Pseudapanteles dignus (Hymenoptera: Braconidae) on its Host Tuta absoluta (Lepidoptera: Gelechiidae) in Tomato Crops in Argentina.

Nieves EL, Pereyra PC, Luna MG, Medone P, Sánchez NE.

J Econ Entomol. 2015 Aug;108(4):1553-9. doi: 10.1093/jee/tov115. Epub 2015 May 14.


Buprenorphine decreases the CCL2-mediated chemotactic response of monocytes.

Carvallo L, Lopez L, Che FY, Lim J, Eugenin EA, Williams DW, Nieves E, Calderon TM, Madrid-Aliste C, Fiser A, Weiss L, Angeletti RH, Berman JW.

J Immunol. 2015 Apr 1;194(7):3246-58. doi: 10.4049/jimmunol.1302647. Epub 2015 Feb 25.


Can your protein be sumoylated? A quick summary and important tips to study SUMO-modified proteins.

Xiao Y, Pollack D, Nieves E, Winchell A, Callaway M, Vigodner M.

Anal Biochem. 2015 May 15;477:95-7. doi: 10.1016/j.ab.2014.11.006. Epub 2014 Nov 29.


Effect of environmental disturbance on the population of sandflies and leishmania transmission in an endemic area of Venezuela.

Nieves E, Oraá L, Rondón Y, Sánchez M, Sánchez Y, Rojas M, Rondón M, Rujano M, González N, Cazorla D.

J Trop Med. 2014;2014:280629. doi: 10.1155/2014/280629. Epub 2014 Apr 7.


Pigment production on L-tryptophan medium by Cryptococcus gattii and Cryptococcus neoformans.

Chaskes S, Cammer M, Nieves E, Casadevall A.

PLoS One. 2014 Apr 15;9(4):e91901. doi: 10.1371/journal.pone.0091901. eCollection 2014.


Quorum sensing-mediated, cell density-dependent regulation of growth and virulence in Cryptococcus neoformans.

Albuquerque P, Nicola AM, Nieves E, Paes HC, Williamson PR, Silva-Pereira I, Casadevall A.

MBio. 2013 Dec 31;5(1):e00986-13. doi: 10.1128/mBio.00986-13.


The histone code of Toxoplasma gondii comprises conserved and unique posttranslational modifications.

Nardelli SC, Che FY, Silmon de Monerri NC, Xiao H, Nieves E, Madrid-Aliste C, Angel SO, Sullivan WJ Jr, Angeletti RH, Kim K, Weiss LM.

MBio. 2013 Dec 10;4(6):e00922-13. doi: 10.1128/mBio.00922-13.


Allogeneic T cell responses are regulated by a specific miRNA-mRNA network.

Sun Y, Tawara I, Zhao M, Qin ZS, Toubai T, Mathewson N, Tamaki H, Nieves E, Chinnaiyan AM, Reddy P.

J Clin Invest. 2013 Nov;123(11):4739-54.


Demographic fitness of Belminus ferroae (Hemiptera: Triatominae) on three different hosts under laboratory conditions.

Sandoval CM, Medone P, Nieves EE, Jaimes DA, Ortiz N, Rabinovich JE.

Mem Inst Oswaldo Cruz. 2013 Nov;108(7):854-64. doi: 10.1590/0074-0276130211.


Phosphopeptide enrichment by covalent chromatography after derivatization of protein digests immobilized on reversed-phase supports.

Nika H, Nieves E, Hawke DH, Angeletti RH.

J Biomol Tech. 2013 Sep;24(3):154-77. doi: 10.7171/jbt.13-2403-004.


Optimization of the β-elimination/michael addition chemistry on reversed-phase supports for mass spectrometry analysis of O-linked protein modifications.

Nika H, Nieves E, Hawke DH, Angeletti RH.

J Biomol Tech. 2013 Sep;24(3):132-53. doi: 10.7171/jbt.13-2403-005.


Enhanced detection of multiply phosphorylated peptides and identification of their sites of modification.

Fleitz A, Nieves E, Madrid-Aliste C, Fentress SJ, Sibley LD, Weiss LM, Angeletti RH, Che FY.

Anal Chem. 2013 Sep 17;85(18):8566-76. doi: 10.1021/ac401691g. Epub 2013 Aug 29.


Receptor-type protein-tyrosine phosphatase ζ is a functional receptor for interleukin-34.

Nandi S, Cioce M, Yeung YG, Nieves E, Tesfa L, Lin H, Hsu AW, Halenbeck R, Cheng HY, Gokhan S, Mehler MF, Stanley ER.

J Biol Chem. 2013 Jul 26;288(30):21972-86. doi: 10.1074/jbc.M112.442731. Epub 2013 Jun 6.


Robustness to mechanical perturbations of center-launching technique for transparent board-to-board and data server interconnects.

Boletti A, Boffi P, Gatto A, Martelli P, Nieves EC, Martinelli M.

Opt Express. 2013 May 20;21(10):12410-8. doi: 10.1364/OE.21.012410.


C-terminal protein characterization by mass spectrometry using combined micro scale liquid and solid-phase derivatization.

Nika H, Nieves E, Hawke DH, Angeletti RH.

J Biomol Tech. 2013 Apr;24(1):17-31. doi: 10.7171/jbt.13-2401-003.


Host-derived CD8+ dendritic cells are required for induction of optimal graft-versus-tumor responses after experimental allogeneic bone marrow transplantation.

Toubai T, Sun Y, Luker G, Liu J, Luker KE, Tawara I, Evers R, Liu C, Mathewson N, Malter C, Nieves E, Choi S, Murphy KM, Reddy P.

Blood. 2013 May 16;121(20):4231-41. doi: 10.1182/blood-2012-05-432872. Epub 2013 Mar 21.


PU.1-dependent transcriptional regulation of miR-142 contributes to its hematopoietic cell-specific expression and modulation of IL-6.

Sun Y, Sun J, Tomomi T, Nieves E, Mathewson N, Tamaki H, Evers R, Reddy P.

J Immunol. 2013 Apr 15;190(8):4005-13. doi: 10.4049/jimmunol.1202911. Epub 2013 Mar 15.


Protein expression profiles of human lymph and plasma mapped by 2D-DIGE and 1D SDS-PAGE coupled with nanoLC-ESI-MS/MS bottom-up proteomics.

Clement CC, Aphkhazava D, Nieves E, Callaway M, Olszewski W, Rotzschke O, Santambrogio L.

J Proteomics. 2013 Jan 14;78:172-87. doi: 10.1016/j.jprot.2012.11.013. Epub 2012 Nov 30.


Lactobacillus proteins are associated with the bactericidal activity against E. coli of female genital tract secretions.

Kalyoussef S, Nieves E, Dinerman E, Carpenter C, Shankar V, Oh J, Burd B, Angeletti RH, Buckheit KW, Fredricks DN, Madan RP, Keller MJ, Herold BC.

PLoS One. 2012;7(11):e49506. doi: 10.1371/journal.pone.0049506. Epub 2012 Nov 19.


Localization and identification of sumoylated proteins in human sperm: excessive sumoylation is a marker of defective spermatozoa.

Vigodner M, Shrivastava V, Gutstein LE, Schneider J, Nieves E, Goldstein M, Feliciano M, Callaway M.

Hum Reprod. 2013 Jan;28(1):210-23. doi: 10.1093/humrep/des317. Epub 2012 Oct 17.


Influence of donor microbiota on the severity of experimental graft-versus-host-disease.

Tawara I, Liu C, Tamaki H, Toubai T, Sun Y, Evers R, Nieves E, Mathewson N, Nunez G, Reddy P.

Biol Blood Marrow Transplant. 2013 Jan;19(1):164-8. doi: 10.1016/j.bbmt.2012.09.001. Epub 2012 Sep 13.


Sandfly saliva of Lutzomyia ovallesi (Diptera: Psychodidae) as a possible marker for the transmission of Leishmania in Venezuela Andes region.

Nieves E, Sánchez Y, Sánchez H, Rondón M, González N, Carrero J.

J Vector Borne Dis. 2012 Mar;49(1):8-14.


Adulticide effect of Monticalia greenmaniana (Asteraceae) against Lutzomyia migonei (Diptera: Psychodidae).

Cárdenas J, Rojas J, Rondón M, Nieves E.

Parasitol Res. 2012 Aug;111(2):787-94. doi: 10.1007/s00436-012-2901-2. Epub 2012 Apr 4.


Donor- but not host-derived interleukin-10 contributes to the regulation of experimental graft-versus-host disease.

Tawara I, Sun Y, Liu C, Toubai T, Nieves E, Evers R, Alrubaie M, Mathewson N, Tamaki H, Reddy P.

J Leukoc Biol. 2012 Apr;91(4):667-75. doi: 10.1189/jlb.1011510. Epub 2012 Jan 18.


Alpha-1-antitrypsin monotherapy reduces graft-versus-host disease after experimental allogeneic bone marrow transplantation.

Tawara I, Sun Y, Lewis EC, Toubai T, Evers R, Nieves E, Azam T, Dinarello CA, Reddy P.

Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):564-9. doi: 10.1073/pnas.1117665109. Epub 2011 Dec 27.


A new vesicular compartment in Encephalitozoon cuniculi.

Ghosh K, Nieves E, Keeling P, Cali A, Weiss LM.

Microbes Infect. 2012 Apr;14(4):324-8. doi: 10.1016/j.micinf.2011.11.010. Epub 2011 Nov 28.


Inhibition of histone methylation arrests ongoing graft-versus-host disease in mice by selectively inducing apoptosis of alloreactive effector T cells.

He S, Wang J, Kato K, Xie F, Varambally S, Mineishi S, Kuick R, Mochizuki K, Liu Y, Nieves E, Mani RS, Chinnaiyan AM, Marquez VE, Zhang Y.

Blood. 2012 Feb 2;119(5):1274-82. doi: 10.1182/blood-2011-06-364422. Epub 2011 Nov 23.


Induction of acute GVHD by sex-mismatched H-Y antigens in the absence of functional radiosensitive host hematopoietic-derived antigen-presenting cells.

Toubai T, Tawara I, Sun Y, Liu C, Nieves E, Evers R, Friedman T, Korngold R, Reddy P.

Blood. 2012 Apr 19;119(16):3844-53. doi: 10.1182/blood-2011-10-384057. Epub 2011 Nov 18.


NEK1 Facilitates Cohesin Removal during Mammalian Spermatogenesis.

Holloway K, Roberson EC, Corbett KL, Kolas NK, Nieves E, Cohen PE.

Genes (Basel). 2011 Mar 7;2(1):260-79. doi: 10.3390/genes2010260.


Analysis of the glycoproteome of Toxoplasma gondii using lectin affinity chromatography and tandem mass spectrometry.

Luo Q, Upadhya R, Zhang H, Madrid-Aliste C, Nieves E, Kim K, Angeletti RH, Weiss LM.

Microbes Infect. 2011 Dec;13(14-15):1199-210. doi: 10.1016/j.micinf.2011.08.013. Epub 2011 Aug 31.


Host basophils are dispensable for induction of donor T helper 2 cell differentiation and severity of experimental graft-versus-host disease.

Tawara I, Nieves E, Liu C, Evers R, Toubai T, Sun Y, Alrubaie M, Reddy P.

Biol Blood Marrow Transplant. 2011 Dec;17(12):1747-53. doi: 10.1016/j.bbmt.2011.08.013. Epub 2011 Aug 25.


Photo-assisted peptide enrichment in protein complex cross-linking analysis of a model homodimeric protein using mass spectrometry.

Yan F, Che FY, Nieves E, Weiss LM, Angeletti RH, Fiser A.

Proteomics. 2011 Oct;11(20):4109-15. doi: 10.1002/pmic.201100015. Epub 2011 Sep 6.


Phospholipids trigger Cryptococcus neoformans capsular enlargement during interactions with amoebae and macrophages.

Chrisman CJ, Albuquerque P, Guimaraes AJ, Nieves E, Casadevall A.

PLoS Pathog. 2011 May;7(5):e1002047. doi: 10.1371/journal.ppat.1002047. Epub 2011 May 26.


Bacterial translocation in abdominal trauma and postoperative infections.

Nieves E, Tobón LF, Ríos DI, Isaza A, Ramírez M, Beltrán JA, Garzón-Ospina D, Patarroyo MA, Gómez A.

J Trauma. 2011 Nov;71(5):1258-61. doi: 10.1097/TA.0b013e318215140e.


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