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Items: 1 to 50 of 148

1.

Electrical Charge State Manipulation of Single Silicon Vacancies in a Silicon Carbide Quantum Optoelectronic Device.

Widmann M, Niethammer M, Fedyanin DY, Khramtsov IA, Rendler T, Booker ID, Ul Hassan J, Morioka N, Chen YC, Ivanov IG, Son NT, Ohshima T, Bockstedte M, Gali A, Bonato C, Lee SY, Wrachtrup J.

Nano Lett. 2019 Oct 9;19(10):7173-7180. doi: 10.1021/acs.nanolett.9b02774. Epub 2019 Sep 25.

PMID:
31532999
2.

Patient-Specific Registration of Pre-operative and Post-recurrence Brain Tumor MRI Scans.

Han X, Bakas S, Kwitt R, Aylward S, Akbari H, Bilello M, Davatzikos C, Niethammer M.

Brainlesion. 2019;11383:105-114. doi: 10.1007/978-3-030-11723-8_10. Epub 2019 Jan 26.

3.

Fast predictive simple geodesic regression.

Ding Z, Fleishman G, Yang X, Thompson P, Kwitt R, Niethammer M; Alzheimer’s Disease Neuroimaging Initiative.

Med Image Anal. 2019 Aug;56:193-209. doi: 10.1016/j.media.2019.06.003. Epub 2019 Jun 12.

PMID:
31252162
4.

Contextual Additive Networks to Efficiently Boost 3D Image Segmentations.

Xu Z, Shen Z, Niethammer M.

Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018). 2018 Sep;11045:92-100. Epub 2018 Sep 20.

5.

Exploratory Population Analysis with Unbalanced Optimal Transport.

Gerber S, Niethammer M, Styner M, Aylward S.

Med Image Comput Comput Assist Interv. 2018 Sep;11072:464-472. doi: 10.1007/978-3-030-00931-1_53. Epub 2018 Sep 13.

6.

Multiseg pipeline: automatic tissue segmentation of brain MR images with subject-specific atlases.

Pham K, Yang X, Niethammer M, Prieto JC, Styner M.

Proc SPIE Int Soc Opt Eng. 2019 Feb;10953. pii: 109530K. doi: 10.1117/12.2513237. Epub 2019 Mar 15.

7.

High-fidelity spin and optical control of single silicon-vacancy centres in silicon carbide.

Nagy R, Niethammer M, Widmann M, Chen YC, Udvarhelyi P, Bonato C, Hassan JU, Karhu R, Ivanov IG, Son NT, Maze JR, Ohshima T, Soykal ÖO, Gali Á, Lee SY, Kaiser F, Wrachtrup J.

Nat Commun. 2019 Apr 26;10(1):1954. doi: 10.1038/s41467-019-09873-9.

8.

Laser Writing of Scalable Single Color Centers in Silicon Carbide.

Chen YC, Salter PS, Niethammer M, Widmann M, Kaiser F, Nagy R, Morioka N, Babin C, Erlekampf J, Berwian P, Booth MJ, Wrachtrup J.

Nano Lett. 2019 Apr 10;19(4):2377-2383. doi: 10.1021/acs.nanolett.8b05070. Epub 2019 Mar 20.

PMID:
30882227
9.

Network Imaging in Parkinsonian and Other Movement Disorders: Network Dysfunction and Clinical Correlates.

Niethammer M, Eidelberg D.

Int Rev Neurobiol. 2019;144:143-184. doi: 10.1016/bs.irn.2018.10.004. Epub 2018 Nov 28.

PMID:
30638453
10.

Gene therapy reduces Parkinson's disease symptoms by reorganizing functional brain connectivity.

Niethammer M, Tang CC, Vo A, Nguyen N, Spetsieris P, Dhawan V, Ma Y, Small M, Feigin A, During MJ, Kaplitt MG, Eidelberg D.

Sci Transl Med. 2018 Nov 28;10(469). pii: eaau0713. doi: 10.1126/scitranslmed.aau0713.

PMID:
30487248
11.

Image analysis with deep learning to predict breast cancer grade, ER status, histologic subtype, and intrinsic subtype.

Couture HD, Williams LA, Geradts J, Nyante SJ, Butler EN, Marron JS, Perou CM, Troester MA, Niethammer M.

NPJ Breast Cancer. 2018 Sep 3;4:30. doi: 10.1038/s41523-018-0079-1. eCollection 2018.

12.

Compressing Networks with Super Nodes.

Stanley N, Kwitt R, Niethammer M, Mucha PJ.

Sci Rep. 2018 Jul 18;8(1):10892. doi: 10.1038/s41598-018-29174-3.

13.

Image-Based Methods for Phase Estimation, Gating, and Temporal Superresolution of Cardiac Ultrasound.

Chittajallu DR, McCormick M, Gerber S, Czernuszewicz TJ, Gessner R, Willis MS, Niethammer M, Kwitt R, Aylward SR.

IEEE Trans Biomed Eng. 2019 Jan;66(1):72-79. doi: 10.1109/TBME.2018.2823279. Epub 2018 Apr 24.

PMID:
29993406
14.

SCOLIOSIS SCREENING AND MONITORING USING SELF CONTAINED ULTRASOUND AND NEURAL NETWORKS.

Greer H, Gerber S, Niethammer M, Kwitt R, McCormick M, Chittajallu D, Siekierski N, Oetgen M, Cleary K, Aylward S.

Proc IEEE Int Symp Biomed Imaging. 2018 Apr;2018:1500-1503. doi: 10.1109/ISBI.2018.8363857. Epub 2018 May 24.

15.

Brain extraction from normal and pathological images: A joint PCA/Image-Reconstruction approach.

Han X, Kwitt R, Aylward S, Bakas S, Menze B, Asturias A, Vespa P, Van Horn J, Niethammer M.

Neuroimage. 2018 Aug 1;176:431-445. doi: 10.1016/j.neuroimage.2018.04.073. Epub 2018 May 4.

16.

ACTIVE MEAN FIELDS FOR PROBABILISTIC IMAGE SEGMENTATION: CONNECTIONS WITH CHAN-VESE AND RUDIN-OSHER-FATEMI MODELS.

Niethammer M, Pohl KM, Janoos F, Wells WM 3rd.

SIAM J Imaging Sci. 2017;10(3):1069-1103. doi: 10.1137/16M1058601. Epub 2017 Jul 27.

17.

Increased putamen hypercapnic vasoreactivity in levodopa-induced dyskinesia.

Jourdain VA, Schindlbeck KA, Tang CC, Niethammer M, Choi YY, Markowitz D, Nazem A, Nardi D, Carras N, Feigin A, Ma Y, Peng S, Dhawan V, Eidelberg D.

JCI Insight. 2017 Oct 19;2(20). pii: 96411. doi: 10.1172/jci.insight.96411.

18.

Functional imaging in Huntington disease.

Niethammer M, Eidelberg D.

Handb Clin Neurol. 2017;144:263-287. doi: 10.1016/B978-0-12-801893-4.00021-3. Review.

PMID:
28947122
19.

Quicksilver: Fast predictive image registration - A deep learning approach.

Yang X, Kwitt R, Styner M, Niethammer M.

Neuroimage. 2017 Sep;158:378-396. doi: 10.1016/j.neuroimage.2017.07.008. Epub 2017 Jul 11.

20.

Long-term follow-up of a randomized AAV2-GAD gene therapy trial for Parkinson's disease.

Niethammer M, Tang CC, LeWitt PA, Rezai AR, Leehey MA, Ojemann SG, Flaherty AW, Eskandar EN, Kostyk SK, Sarkar A, Siddiqui MS, Tatter SB, Schwalb JM, Poston KL, Henderson JM, Kurlan RM, Richard IH, Sapan CV, Eidelberg D, During MJ, Kaplitt MG, Feigin A.

JCI Insight. 2017 Apr 6;2(7):e90133. doi: 10.1172/jci.insight.90133.

21.

EFFICIENT REGISTRATION OF PATHOLOGICAL IMAGES: A JOINT PCA/IMAGE-RECONSTRUCTION APPROACH.

Han X, Yang X, Aylward S, Kwitt R, Niethammer M.

Proc IEEE Int Symp Biomed Imaging. 2017 Apr;2017:10-14. doi: 10.1109/ISBI.2017.7950456. Epub 2017 Jun 19.

22.

Scalable Quantum Photonics with Single Color Centers in Silicon Carbide.

Radulaski M, Widmann M, Niethammer M, Zhang JL, Lee SY, Rendler T, Lagoudakis KG, Son NT, Janzén E, Ohshima T, Wrachtrup J, Vučković J.

Nano Lett. 2017 Mar 8;17(3):1782-1786. doi: 10.1021/acs.nanolett.6b05102. Epub 2017 Feb 24.

23.

The UNC-Wisconsin Rhesus Macaque Neurodevelopment Database: A Structural MRI and DTI Database of Early Postnatal Development.

Young JT, Shi Y, Niethammer M, Grauer M, Coe CL, Lubach GR, Davis B, Budin F, Knickmeyer RC, Alexander AL, Styner MA.

Front Neurosci. 2017 Feb 2;11:29. doi: 10.3389/fnins.2017.00029. eCollection 2017.

24.

Molecular imaging to track Parkinson's disease and atypical parkinsonisms: New imaging frontiers.

Strafella AP, Bohnen NI, Perlmutter JS, Eidelberg D, Pavese N, Van Eimeren T, Piccini P, Politis M, Thobois S, Ceravolo R, Higuchi M, Kaasinen V, Masellis M, Peralta MC, Obeso I, Pineda-Pardo JÁ, Cilia R, Ballanger B, Niethammer M, Stoessl JA; IPMDS-Neuroimaging Study Group.

Mov Disord. 2017 Feb;32(2):181-192. doi: 10.1002/mds.26907. Epub 2017 Feb 2. Review.

25.

Distinct brain networks underlie cognitive dysfunction in Parkinson and Alzheimer diseases.

Mattis PJ, Niethammer M, Sako W, Tang CC, Nazem A, Gordon ML, Brandt V, Dhawan V, Eidelberg D.

Neurology. 2016 Nov 1;87(18):1925-1933. Epub 2016 Oct 5.

26.

Current Opinions and Areas of Consensus on the Role of the Cerebellum in Dystonia.

Shakkottai VG, Batla A, Bhatia K, Dauer WT, Dresel C, Niethammer M, Eidelberg D, Raike RS, Smith Y, Jinnah HA, Hess EJ, Meunier S, Hallett M, Fremont R, Khodakhah K, LeDoux MS, Popa T, Gallea C, Lehericy S, Bostan AC, Strick PL.

Cerebellum. 2017 Apr;16(2):577-594. doi: 10.1007/s12311-016-0825-6.

27.

Registration of Pathological Images.

Yang X, Han X, Park E, Aylward S, Kwitt R, Niethammer M.

Simul Synth Med Imaging. 2016 Oct;9968:97-107. doi: 10.1007/978-3-319-46630-9_10. Epub 2016 Sep 23.

28.

Association of GBA Mutations and the E326K Polymorphism With Motor and Cognitive Progression in Parkinson Disease.

Davis MY, Johnson CO, Leverenz JB, Weintraub D, Trojanowski JQ, Chen-Plotkin A, Van Deerlin VM, Quinn JF, Chung KA, Peterson-Hiller AL, Rosenthal LS, Dawson TM, Albert MS, Goldman JG, Stebbins GT, Bernard B, Wszolek ZK, Ross OA, Dickson DW, Eidelberg D, Mattis PJ, Niethammer M, Yearout D, Hu SC, Cholerton BA, Smith M, Mata IF, Montine TJ, Edwards KL, Zabetian CP.

JAMA Neurol. 2016 Oct 1;73(10):1217-1224. doi: 10.1001/jamaneurol.2016.2245.

29.

ULTRASOUND SPECTROSCOPY.

Aylward SR, McCormick M, Kang HJ, Razzaque S, Kwitt R, Niethammer M.

Proc IEEE Int Symp Biomed Imaging. 2016 Apr;2016:1013-1016. doi: 10.1109/ISBI.2016.7493437. Epub 2016 Jun 16.

30.

Automatic path proposal computation for CT-guided percutaneous liver biopsy.

Helck A, Schumann C, Aumann J, Thierfelder K, Strobl FF, Braunagel M, Niethammer M, Clevert DA, Hoffmann RT, Reiser M, Sandner T, Trumm C.

Int J Comput Assist Radiol Surg. 2016 Dec;11(12):2199-2205. Epub 2016 Jan 25.

PMID:
26811078
31.

Parametric Regression on the Grassmannian.

Hong Y, Kwitt R, Singh N, Vasconcelos N, Niethammer M.

IEEE Trans Pattern Anal Mach Intell. 2016 Nov;38(11):2284-2297. Epub 2016 Jan 12.

PMID:
26766216
32.

The visual perception of natural motion: abnormal task-related neural activity in DYT1 dystonia.

Sako W, Fujita K, Vo A, Rucker JC, Rizzo JR, Niethammer M, Carbon M, Bressman SB, Uluğ AM, Eidelberg D.

Brain. 2015 Dec;138(Pt 12):3598-609. doi: 10.1093/brain/awv282. Epub 2015 Sep 29.

33.

Quantitative assessment of the upper airway in infants and children with subglottic stenosis.

Zdanski C, Davis S, Hong Y, Miao D, Quammen C, Mitran S, Davis B, Niethammer M, Kimbell J, Pitkin E, Fine J, Fordham L, Vaughn B, Superfine R.

Laryngoscope. 2016 May;126(5):1225-31. doi: 10.1002/lary.25482. Epub 2015 Jul 30.

34.

Group Testing for Longitudinal Data.

Hong Y, Singh N, Kwitt R, Niethammer M.

Inf Process Med Imaging. 2015;24:139-51.

PMID:
26221671
35.

Robust estimation of group-wise cortical correspondence with an application to macaque and human neuroimaging studies.

Lyu I, Kim SH, Seong JK, Yoo SW, Evans A, Shi Y, Sanchez M, Niethammer M, Styner MA.

Front Neurosci. 2015 Jun 11;9:210. doi: 10.3389/fnins.2015.00210. eCollection 2015.

36.

Low-Rank Atlas Image Analyses in the Presence of Pathologies.

Liu X, Niethammer M, Kwitt R, Singh N, McCormick M, Aylward S.

IEEE Trans Med Imaging. 2015 Dec;34(12):2583-91. doi: 10.1109/TMI.2015.2448556. Epub 2015 Jun 22.

37.

Splines for diffeomorphisms.

Singh N, Vialard FX, Niethammer M.

Med Image Anal. 2015 Oct;25(1):56-71. doi: 10.1016/j.media.2015.04.012. Epub 2015 Apr 18.

PMID:
25980676
38.

Shape analysis based on depth-ordering.

Hong Y, Gao Y, Niethammer M, Bouix S.

Med Image Anal. 2015 Oct;25(1):2-10. doi: 10.1016/j.media.2015.04.004. Epub 2015 Apr 16.

39.

Appearance normalization of histology slides.

Vicory J, Couture HD, Thomas NE, Borland D, Marron JS, Woosley J, Niethammer M.

Comput Med Imaging Graph. 2015 Jul;43:89-98. doi: 10.1016/j.compmedimag.2015.03.005. Epub 2015 Mar 21.

40.

Diseased Region Detection of Longitudinal Knee Magnetic Resonance Imaging Data.

Huang C, Shan L, Charles HC, Wirth W, Niethammer M, Zhu H.

IEEE Trans Med Imaging. 2015 Sep;34(9):1914-27. doi: 10.1109/TMI.2015.2415675. Epub 2015 Mar 23.

41.

Splines for diffeomorphic image regression.

Singh N, Niethammer M.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):121-9.

42.

Time-warped geodesic regression.

Hong Y, Singh N, Kwitt R, Niethammer M.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):105-12.

43.

Geometric-feature-based spectral graph matching in pharyngeal surface registration.

Zhao Q, Pizer S, Niethammer M, Rosenman J.

Med Image Comput Comput Assist Interv. 2014;17(Pt 1):259-66.

44.

Low-rank to the rescue - atlas-based analyses in the presence of pathologies.

Liu X, Niethammer M, Kwitt R, McCormick M, Aylward S.

Med Image Comput Comput Assist Interv. 2014;17(Pt 3):97-104.

45.

Depth-based shape-analysis.

Hong Y, Gao Y, Niethammer M, Bouix S.

Med Image Comput Comput Assist Interv. 2014;17(Pt 3):17-24.

PMID:
25320777
46.

A disease-specific metabolic brain network associated with corticobasal degeneration.

Niethammer M, Tang CC, Feigin A, Allen PJ, Heinen L, Hellwig S, Amtage F, Hanspal E, Vonsattel JP, Poston KL, Meyer PT, Leenders KL, Eidelberg D.

Brain. 2014 Nov;137(Pt 11):3036-46. doi: 10.1093/brain/awu256. Epub 2014 Sep 9.

47.

Automatic atlas-based three-label cartilage segmentation from MR knee images.

Shan L, Zach C, Charles C, Niethammer M.

Med Image Anal. 2014 Oct;18(7):1233-46. doi: 10.1016/j.media.2014.05.008. Epub 2014 Jun 28.

48.

Large deformation diffeomorphic registration of diffusion-weighted imaging data.

Zhang P, Niethammer M, Shen D, Yap PT.

Med Image Anal. 2014 Dec;18(8):1290-8. doi: 10.1016/j.media.2014.06.012. Epub 2014 Jul 21.

49.

Thalamocortical Connectivity Correlates with Phenotypic Variability in Dystonia.

Vo A, Sako W, Niethammer M, Carbon M, Bressman SB, Uluğ AM, Eidelberg D.

Cereb Cortex. 2015 Sep;25(9):3086-94. doi: 10.1093/cercor/bhu104. Epub 2014 May 23.

50.

Statistical atlas construction via weighted functional boxplots.

Hong Y, Davis B, Marron JS, Kwitt R, Singh N, Kimbell JS, Pitkin E, Superfine R, Davis SD, Zdanski CJ, Niethammer M.

Med Image Anal. 2014 May;18(4):684-98. doi: 10.1016/j.media.2014.03.001. Epub 2014 Mar 29.

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