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Items: 19


On the evolution and physiology of cable bacteria.

Kjeldsen KU, Schreiber L, Thorup CA, Boesen T, Bjerg JT, Yang T, Dueholm MS, Larsen S, Risgaard-Petersen N, Nierychlo M, Schmid M, Bøggild A, van de Vossenberg J, Geelhoed JS, Meysman FJR, Wagner M, Nielsen PH, Nielsen LP, Schramm A.

Proc Natl Acad Sci U S A. 2019 Sep 17;116(38):19116-19125. doi: 10.1073/pnas.1903514116. Epub 2019 Aug 19.


Re-evaluating the microbiology of the enhanced biological phosphorus removal process.

Nielsen PH, McIlroy SJ, Albertsen M, Nierychlo M.

Curr Opin Biotechnol. 2019 Jun;57:111-118. doi: 10.1016/j.copbio.2019.03.008. Epub 2019 Apr 5. Review.


Resolving the individual contribution of key microbial populations to enhanced biological phosphorus removal with Raman-FISH.

Fernando EY, McIlroy SJ, Nierychlo M, Herbst FA, Petriglieri F, Schmid MC, Wagner M, Nielsen JL, Nielsen PH.

ISME J. 2019 Aug;13(8):1933-1946. doi: 10.1038/s41396-019-0399-7. Epub 2019 Mar 20.


The morphology and metabolic potential of the Chloroflexi in full-scale activated sludge wastewater treatment plants.

Nierychlo M, Milobedzka A, Petriglieri F, McIlroy B, Nielsen PH, McIlroy SJ.

FEMS Microbiol Ecol. 2019 Feb 1;95(2). doi: 10.1093/femsec/fiy228.


In situ visualisation of the abundant Chloroflexi populations in full-scale anaerobic digesters and the fate of immigrating species.

Petriglieri F, Nierychlo M, Nielsen PH, McIlroy SJ.

PLoS One. 2018 Nov 1;13(11):e0206255. doi: 10.1371/journal.pone.0206255. eCollection 2018.


Genomic insights into Candidatus Amarolinea aalborgensis gen. nov., sp. nov., associated with settleability problems in wastewater treatment plants.

Andersen MH, McIlroy SJ, Nierychlo M, Nielsen PH, Albertsen M.

Syst Appl Microbiol. 2019 Jan;42(1):77-84. doi: 10.1016/j.syapm.2018.08.001. Epub 2018 Aug 16.


Genomic and in Situ Analyses Reveal the Micropruina spp. as Abundant Fermentative Glycogen Accumulating Organisms in Enhanced Biological Phosphorus Removal Systems.

McIlroy SJ, Onetto CA, McIlroy B, Herbst FA, Dueholm MS, Kirkegaard RH, Fernando E, Karst SM, Nierychlo M, Kristensen JM, Eales KL, Grbin PR, Wimmer R, Nielsen PH.

Front Microbiol. 2018 May 23;9:1004. doi: 10.3389/fmicb.2018.01004. eCollection 2018.


The impact of immigration on microbial community composition in full-scale anaerobic digesters.

Kirkegaard RH, McIlroy SJ, Kristensen JM, Nierychlo M, Karst SM, Dueholm MS, Albertsen M, Nielsen PH.

Sci Rep. 2017 Aug 24;7(1):9343. doi: 10.1038/s41598-017-09303-0.


A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems.

Stokholm-Bjerregaard M, McIlroy SJ, Nierychlo M, Karst SM, Albertsen M, Nielsen PH.

Front Microbiol. 2017 Apr 27;8:718. doi: 10.3389/fmicb.2017.00718. eCollection 2017.


Unified understanding of physico-chemical properties of activated sludge and fouling propensity.

Jørgensen MK, Nierychlo M, Nielsen AH, Larsen P, Christensen ML, Nielsen PH.

Water Res. 2017 Sep 1;120:117-132. doi: 10.1016/j.watres.2017.04.056. Epub 2017 Apr 26.


MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups.

McIlroy SJ, Kirkegaard RH, McIlroy B, Nierychlo M, Kristensen JM, Karst SM, Albertsen M, Nielsen PH.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax016.


Long-term effects of sulphide on the enhanced biological removal of phosphorus: The symbiotic role of Thiothrix caldifontis.

Rubio-Rincón FJ, Welles L, Lopez-Vazquez CM, Nierychlo M, Abbas B, Geleijnse M, Nielsen PH, van Loosdrecht MCM, Brdjanovic D.

Water Res. 2017 Jun 1;116:53-64. doi: 10.1016/j.watres.2017.03.017. Epub 2017 Mar 7.


Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters.

Kirkegaard RH, Dueholm MS, McIlroy SJ, Nierychlo M, Karst SM, Albertsen M, Nielsen PH.

ISME J. 2016 Oct;10(10):2352-64. doi: 10.1038/ismej.2016.43. Epub 2016 Apr 8.


Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge.

McIlroy SJ, Karst SM, Nierychlo M, Dueholm MS, Albertsen M, Kirkegaard RH, Seviour RJ, Nielsen PH.

ISME J. 2016 Sep;10(9):2223-34. doi: 10.1038/ismej.2016.14. Epub 2016 Feb 23.


Characterization of the In Situ Ecophysiology of Novel Phylotypes in Nutrient Removal Activated Sludge Treatment Plants.

McIlroy SJ, Awata T, Nierychlo M, Albertsen M, Kindaichi T, Nielsen PH.

PLoS One. 2015 Sep 4;10(9):e0136424. doi: 10.1371/journal.pone.0136424. eCollection 2015.


MiDAS: the field guide to the microbes of activated sludge.

McIlroy SJ, Saunders AM, Albertsen M, Nierychlo M, McIlroy B, Hansen AA, Karst SM, Nielsen JL, Nielsen PH.

Database (Oxford). 2015 Jun 27;2015:bav062. doi: 10.1093/database/bav062. Print 2015.


Identification of active denitrifiers in full-scale nutrient removal wastewater treatment systems.

McIlroy SJ, Starnawska A, Starnawski P, Saunders AM, Nierychlo M, Nielsen PH, Nielsen JL.

Environ Microbiol. 2016 Jan;18(1):50-64. doi: 10.1111/1462-2920.12614. Epub 2014 Oct 22.


High and stable substrate specificities of microorganisms in enhanced biological phosphorus removal plants.

Kindaichi T, Nierychlo M, Kragelund C, Nielsen JL, Nielsen PH.

Environ Microbiol. 2013 Jun;15(6):1821-31. doi: 10.1111/1462-2920.12074. Epub 2013 Jan 16.


Experimental methods and modeling techniques for description of cell population heterogeneity.

Fernandes RL, Nierychlo M, Lundin L, Pedersen AE, Puentes Tellez PE, Dutta A, Carlquist M, Bolic A, Schäpper D, Brunetti AC, Helmark S, Heins AL, Jensen AD, Nopens I, Rottwitt K, Szita N, van Elsas JD, Nielsen PH, Martinussen J, Sørensen SJ, Lantz AE, Gernaey KV.

Biotechnol Adv. 2011 Nov-Dec;29(6):575-99. doi: 10.1016/j.biotechadv.2011.03.007. Epub 2011 Apr 19. Review.


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