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Items: 40

1.

Global importance of RNA secondary structures in protein-coding sequences.

Fricke M, Gerst R, Ibrahim B, Niepmann M, Marz M.

Bioinformatics. 2019 Feb 15;35(4):579-583. doi: 10.1093/bioinformatics/bty678.

PMID:
30101307
2.

Signals Involved in Regulation of Hepatitis C Virus RNA Genome Translation and Replication.

Niepmann M, Shalamova LA, Gerresheim GK, Rossbach O.

Front Microbiol. 2018 Mar 12;9:395. doi: 10.3389/fmicb.2018.00395. eCollection 2018. Review.

3.

Functional sequestration of microRNA-122 from Hepatitis C Virus by circular RNA sponges.

Jost I, Shalamova LA, Gerresheim GK, Niepmann M, Bindereif A, Rossbach O.

RNA Biol. 2018;15(8):1032-1039. doi: 10.1080/15476286.2018.1435248. Epub 2018 Feb 28.

4.

Cooperative enhancement of translation by two adjacent microRNA-122/Argonaute 2 complexes binding to the 5' untranslated region of hepatitis C virus RNA.

Nieder-Röhrmann A, Dünnes N, Gerresheim GK, Shalamova LA, Herchenröther A, Niepmann M.

J Gen Virol. 2017 Feb;98(2):212-224. doi: 10.1099/jgv.0.000697. Epub 2017 Feb 24.

PMID:
28008821
5.

microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3' untranslated region: function in replication and influence of RNA secondary structure.

Gerresheim GK, Dünnes N, Nieder-Röhrmann A, Shalamova LA, Fricke M, Hofacker I, Höner Zu Siederdissen C, Marz M, Niepmann M.

Cell Mol Life Sci. 2017 Feb;74(4):747-760. doi: 10.1007/s00018-016-2377-9. Epub 2016 Sep 27.

PMID:
27677491
6.

Corrigendum: Conserved RNA secondary structures and long-range interactions in hepatitis C viruses.

Fricke M, Dünnes N, Zayas M, Bartenschlager R, Niepmann M, Marz M.

RNA. 2016 Oct;22(10):1640.1. doi: 10.1261/rna.058123.116. No abstract available.

7.

Correction: microRNA-122 Dependent Binding of Ago2 Protein to Hepatitis C Virus RNA Is Associated with Enhanced RNA Stability and Translation Stimulation.

Conrad KD, Giering F, Erfurth C, Neumann A, Fehr C, Meister G, Niepmann M.

PLoS One. 2016 Jul 29;11(7):e0160132. doi: 10.1371/journal.pone.0160132. eCollection 2016.

8.

Conserved RNA secondary structures and long-range interactions in hepatitis C viruses.

Fricke M, Dünnes N, Zayas M, Bartenschlager R, Niepmann M, Marz M.

RNA. 2015 Jul;21(7):1219-32. doi: 10.1261/rna.049338.114. Epub 2015 May 11. Erratum in: RNA. 2016 Oct;22(10 ):1640.1.

9.

The role of microRNAs in hepatitis C virus RNA replication.

Conrad KD, Niepmann M.

Arch Virol. 2014 May;159(5):849-62. doi: 10.1007/s00705-013-1883-4. Epub 2013 Oct 25.

PMID:
24158346
10.

Hepatitis C virus RNA translation.

Niepmann M.

Curr Top Microbiol Immunol. 2013;369:143-66. doi: 10.1007/978-3-642-27340-7_6. Review.

PMID:
23463200
11.

MicroRNA-122 dependent binding of Ago2 protein to hepatitis C virus RNA is associated with enhanced RNA stability and translation stimulation.

Conrad KD, Giering F, Erfurth C, Neumann A, Fehr C, Meister G, Niepmann M.

PLoS One. 2013;8(2):e56272. doi: 10.1371/journal.pone.0056272. Epub 2013 Feb 6. Erratum in: PLoS One. 2016;11(7):e0160132.

12.

Stimulation of Hepatitis C Virus RNA translation by microRNA-122 occurs under different conditions in vivo and in vitro.

Goergen D, Niepmann M.

Virus Res. 2012 Aug;167(2):343-52. doi: 10.1016/j.virusres.2012.05.022. Epub 2012 Jun 5.

PMID:
22677772
13.

Glycyl-tRNA synthetase specifically binds to the poliovirus IRES to activate translation initiation.

Andreev DE, Hirnet J, Terenin IM, Dmitriev SE, Niepmann M, Shatsky IN.

Nucleic Acids Res. 2012 Jul;40(12):5602-14. doi: 10.1093/nar/gks182. Epub 2012 Feb 28.

14.

Differential stimulation of hepatitis C virus RNA translation by microRNA-122 in different cell cycle phases.

Fehr C, Conrad KD, Niepmann M.

Cell Cycle. 2012 Jan 15;11(2):277-85. doi: 10.4161/cc.11.2.18699. Epub 2012 Jan 15.

15.

Influence of the hepatitis C virus 3'-untranslated region on IRES-dependent and cap-dependent translation initiation.

Bung C, Bochkaeva Z, Terenin I, Zinovkin R, Shatsky IN, Niepmann M.

FEBS Lett. 2010 Feb 19;584(4):837-42. doi: 10.1016/j.febslet.2010.01.015. Epub 2010 Jan 16.

16.

Internal translation initiation of picornaviruses and hepatitis C virus.

Niepmann M.

Biochim Biophys Acta. 2009 Sep-Oct;1789(9-10):529-41. doi: 10.1016/j.bbagrm.2009.05.002. Epub 2009 May 9. Review.

PMID:
19439208
17.

Activation of hepatitis C virus translation by a liver-specific microRNA.

Niepmann M.

Cell Cycle. 2009 May 15;8(10):1473-7. Epub 2009 May 4.

PMID:
19372740
18.

microRNA-122 stimulates translation of hepatitis C virus RNA.

Henke JI, Goergen D, Zheng J, Song Y, Schüttler CG, Fehr C, Jünemann C, Niepmann M.

EMBO J. 2008 Dec 17;27(24):3300-10. doi: 10.1038/emboj.2008.244. Epub 2008 Nov 20.

19.

The minimum information required for reporting a molecular interaction experiment (MIMIx).

Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M, Stümpflen V, Ceol A, Chatr-aryamontri A, Armstrong J, Woollard P, Salama JJ, Moore S, Wojcik J, Bader GD, Vidal M, Cusick ME, Gerstein M, Gavin AC, Superti-Furga G, Greenblatt J, Bader J, Uetz P, Tyers M, Legrain P, Fields S, Mulder N, Gilson M, Niepmann M, Burgoon L, De Las Rivas J, Prieto C, Perreau VM, Hogue C, Mewes HW, Apweiler R, Xenarios I, Eisenberg D, Cesareni G, Hermjakob H.

Nat Biotechnol. 2007 Aug;25(8):894-8. Review.

PMID:
17687370
20.

Discontinuous native protein gel electrophoresis: pros and cons.

Niepmann M.

Expert Rev Proteomics. 2007 Jun;4(3):355-61. Review.

PMID:
17552919
21.

Extracellular RNA constitutes a natural procoagulant cofactor in blood coagulation.

Kannemeier C, Shibamiya A, Nakazawa F, Trusheim H, Ruppert C, Markart P, Song Y, Tzima E, Kennerknecht E, Niepmann M, von Bruehl ML, Sedding D, Massberg S, Günther A, Engelmann B, Preissner KT.

Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6388-93. Epub 2007 Apr 3.

22.

Picornavirus internal ribosome entry site elements can stimulate translation of upstream genes.

Jünemann C, Song Y, Bassili G, Goergen D, Henke J, Niepmann M.

J Biol Chem. 2007 Jan 5;282(1):132-41. Epub 2006 Nov 8.

23.

Discontinuous native protein gel electrophoresis.

Niepmann M, Zheng J.

Electrophoresis. 2006 Oct;27(20):3949-51.

PMID:
16991206
24.

The hepatitis C virus RNA 3'-untranslated region strongly enhances translation directed by the internal ribosome entry site.

Song Y, Friebe P, Tzima E, Jünemann C, Bartenschlager R, Niepmann M.

J Virol. 2006 Dec;80(23):11579-88. Epub 2006 Sep 13.

25.

A positively charged cluster in the epidermal growth factor-like domain of Factor VII-activating protease (FSAP) is essential for polyanion binding.

Altincicek B, Shibamiya A, Trusheim H, Tzima E, Niepmann M, Linder D, Preissner KT, Kanse SM.

Biochem J. 2006 Mar 15;394(Pt 3):687-92.

26.

Evidence for an RNA chaperone function of polypyrimidine tract-binding protein in picornavirus translation.

Song Y, Tzima E, Ochs K, Bassili G, Trusheim H, Linder M, Preissner KT, Niepmann M.

RNA. 2005 Dec;11(12):1809-24.

27.

Extracellular RNA is a natural cofactor for the (auto-)activation of Factor VII-activating protease (FSAP).

Nakazawa F, Kannemeier C, Shibamiya A, Song Y, Tzima E, Schubert U, Koyama T, Niepmann M, Trusheim H, Engelmann B, Preissner KT.

Biochem J. 2005 Feb 1;385(Pt 3):831-8.

28.
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30.

Unr is required in vivo for efficient initiation of translation from the internal ribosome entry sites of both rhinovirus and poliovirus.

Boussadia O, Niepmann M, Créancier L, Prats AC, Dautry F, Jacquemin-Sablon H.

J Virol. 2003 Mar;77(6):3353-9.

31.

Impaired binding of standard initiation factors mediates poliovirus translation attenuation.

Ochs K, Zeller A, Saleh L, Bassili G, Song Y, Sonntag A, Niepmann M.

J Virol. 2003 Jan;77(1):115-22.

32.

Interaction of translation initiation factor eIF4B with the poliovirus internal ribosome entry site.

Ochs K, Saleh L, Bassili G, Sonntag VH, Zeller A, Niepmann M.

J Virol. 2002 Mar;76(5):2113-22.

33.

Functional interaction of translation initiation factor eIF4G with the foot-and-mouth disease virus internal ribosome entry site.

Saleh L, Rust RC, Füllkrug R, Beck E, Bassili G, Ochs K, Niepmann M.

J Gen Virol. 2001 Apr;82(Pt 4):757-63.

PMID:
11257179
34.

Translation from the internal ribosome entry site of bovine viral diarrhea virus is independent of the interaction with polypyrimidine tract-binding protein.

Sanderbrand SA, Tautz N, Thiel HJ, Ochs K, Beck E, Niepmann M.

Vet Microbiol. 2000 Nov 15;77(1-2):215-27.

PMID:
11042415
39.
40.

Defective replication units of hepatitis B virus.

Schranz P, Zentgraf H, Loncarević IF, Niepmann M, Schröder CH.

J Virol. 1990 Apr;64(4):1851-4.

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