Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 97

1.

Analysis of functional variants in mitochondrial DNA of Finnish athletes.

Kiiskilä J, Moilanen JS, Kytövuori L, Niemi AK, Majamaa K.

BMC Genomics. 2019 Oct 29;20(1):784. doi: 10.1186/s12864-019-6171-6.

2.

Topological Indices of Proteins.

Melnikov D, Niemi AJ, Sedrakyan A.

Sci Rep. 2019 Oct 10;9(1):14641. doi: 10.1038/s41598-019-50809-6.

3.

Protein tertiary structure and the myoglobin phase diagram.

Begun A, Molochkov A, Niemi AJ.

Sci Rep. 2019 Jul 25;9(1):10819. doi: 10.1038/s41598-019-47317-y.

4.
5.

Study of correlations between protein peptide plane dynamics and side chain dynamics.

Hou Y, Liu J, He J, Peng X, Niemi AJ.

PLoS One. 2019 Apr 12;14(4):e0215141. doi: 10.1371/journal.pone.0215141. eCollection 2019.

6.

Near-Infrared Spectroscopy in the Diagnostic Evaluation of Mitochondrial Disorders: A Neonatal Intensive Care Unit Case Series.

Niemi AK, Chock VY.

J Pediatr. 2019 May;208:282-286. doi: 10.1016/j.jpeds.2019.01.022. Epub 2019 Mar 8.

PMID:
30853194
7.

Cinacalcet therapy in an infant with an R185Q calcium-sensing receptor mutation causing hyperparathyroidism: a case report and review of the literature.

Forman TE, Niemi AK, Prahalad P, Shi RZ, Nally LM.

J Pediatr Endocrinol Metab. 2019 Mar 26;32(3):305-310. doi: 10.1515/jpem-2018-0307. Review.

PMID:
30730839
8.

Multiple scales and phases in discrete chains with application to folded proteins.

Sinelnikova A, Niemi AJ, Nilsson J, Ulybyshev M.

Phys Rev E. 2018 May;97(5-1):052107. doi: 10.1103/PhysRevE.97.052107.

PMID:
29906880
9.

Solution x-ray scattering and structure formation in protein dynamics.

Nasedkin A, Davidsson J, Niemi AJ, Peng X.

Phys Rev E. 2017 Dec;96(6-1):062405. doi: 10.1103/PhysRevE.96.062405. Epub 2017 Dec 12.

PMID:
29347365
10.

Pediatric Integrative Medicine.

McClafferty H, Vohra S, Bailey M, Brown M, Esparham A, Gerstbacher D, Golianu B, Niemi AK, Sibinga E, Weydert J, Yeh AM; SECTION ON INTEGRATIVE MEDICINE.

Pediatrics. 2017 Sep;140(3). pii: e20171961. doi: 10.1542/peds.2017-1961. Epub 2017 Aug 28.

11.

Multistage modeling of protein dynamics with monomeric Myc oncoprotein as an example.

Liu J, Dai J, He J, Niemi AJ, Ilieva N.

Phys Rev E. 2017 Mar;95(3-1):032406. doi: 10.1103/PhysRevE.95.032406. Epub 2017 Mar 9.

PMID:
28415220
12.

Review of Randomized Controlled Trials of Massage in Preterm Infants.

Niemi AK.

Children (Basel). 2017 Apr 3;4(4). pii: E21. doi: 10.3390/children4040021. Review.

13.

Metagenomic survey of the taxonomic and functional microbial communities of seawater and sea ice from the Canadian Arctic.

Yergeau E, Michel C, Tremblay J, Niemi A, King TL, Wyglinski J, Lee K, Greer CW.

Sci Rep. 2017 Feb 8;7:42242. doi: 10.1038/srep42242.

14.

Thermal unfolding of myoglobin in the Landau-Ginzburg-Wilson approach.

Peng X, Sieradzan AK, Niemi AJ.

Phys Rev E. 2016 Dec;94(6-1):062405. doi: 10.1103/PhysRevE.94.062405. Epub 2016 Dec 16.

PMID:
28085346
15.

Expanding the phenotype of hawkinsinuria: new insights from response to N-acetyl-L-cysteine.

Gomez-Ospina N, Scott AI, Oh GJ, Potter D, Goel VV, Destino L, Baugh N, Enns GM, Niemi AK, Cowan TM.

J Inherit Metab Dis. 2016 Nov;39(6):821-829. Epub 2016 Aug 3.

PMID:
27488560
16.

Conformational landscape of an amyloid intra-cellular domain and Landau-Ginzburg-Wilson paradigm in protein dynamics.

Dai J, Niemi AJ, He J.

J Chem Phys. 2016 Jul 28;145(4):045103. doi: 10.1063/1.4959582.

PMID:
27475398
17.

Bloch spin waves and emergent structure in protein folding with HIV envelope glycoprotein as an example.

Dai J, Niemi AJ, He J, Sieradzan A, Ilieva N.

Phys Rev E. 2016 Mar;93(3):032409. doi: 10.1103/PhysRevE.93.032409. Epub 2016 Mar 16.

PMID:
27078392
18.

Impaired Health-Related Quality of Life in Children and Families Affected by Methylmalonic Acidemia.

Splinter K, Niemi AK, Cox R, Platt J, Shah M, Enns GM, Kasahara M, Bernstein JA.

J Genet Couns. 2016 Oct;25(5):936-44. doi: 10.1007/s10897-015-9921-x. Epub 2015 Dec 14.

PMID:
26667650
19.

Clustering and percolation in protein loop structures.

Peng X, He J, Niemi AJ.

BMC Struct Biol. 2015 Oct 29;15:22. doi: 10.1186/s12900-015-0049-x.

20.

Phase diagram and the pseudogap state in a linear chiral homopolymer model.

Sinelnikova A, Niemi AJ, Ulybyshev M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Sep;92(3):032602. doi: 10.1103/PhysRevE.92.032602. Epub 2015 Sep 17.

PMID:
26465490
21.

Reply: To PMID 25771389.

Niemi AK, Enns GM.

J Pediatr. 2015 Nov;167(5):1173-4. doi: 10.1016/j.jpeds.2015.08.031. Epub 2015 Sep 9. No abstract available.

PMID:
26362093
22.

Comparing springtime ice-algal chlorophyll a and physical properties of multi-year and first-year sea ice from the Lincoln Sea.

Lange BA, Michel C, Beckers JF, Casey JA, Flores H, Hatam I, Meisterhans G, Niemi A, Haas C.

PLoS One. 2015 Apr 22;10(4):e0122418. doi: 10.1371/journal.pone.0122418. eCollection 2015.

23.

Treatment of methylmalonic acidemia by liver or combined liver-kidney transplantation.

Niemi AK, Kim IK, Krueger CE, Cowan TM, Baugh N, Farrell R, Bonham CA, Concepcion W, Esquivel CO, Enns GM.

J Pediatr. 2015 Jun;166(6):1455-61.e1. doi: 10.1016/j.jpeds.2015.01.051. Epub 2015 Mar 11.

PMID:
25771389
24.

Aspects of structural landscape of human islet amyloid polypeptide.

He J, Dai J, Li J, Peng X, Niemi AJ.

J Chem Phys. 2015 Jan 28;142(4):045102. doi: 10.1063/1.4905586.

PMID:
25638009
25.

Peierls-Nabarro barrier and protein loop propagation.

Sieradzan AK, Niemi A, Peng X.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec;90(6):062717. Epub 2014 Dec 29.

PMID:
25615139
26.

A three dimensional visualisation approach to protein heavy-atom structure reconstruction.

Peng X, Chenani A, Hu S, Zhou Y, Niemi AJ.

BMC Struct Biol. 2014 Dec 31;14:27. doi: 10.1186/s12900-014-0027-8.

27.

Large, omega-3 rich, pelagic diatoms under Arctic sea ice: sources and implications for food webs.

Duerksen SW, Thiemann GW, Budge SM, Poulin M, Niemi A, Michel C.

PLoS One. 2014 Dec 4;9(12):e114070. doi: 10.1371/journal.pone.0114070. eCollection 2014. Erratum in: PLoS One. 2015;10(3):e0118291.

28.

The use of electronic devices for communication with colleagues and other healthcare professionals - nursing professionals' perspectives.

Koivunen M, Niemi A, Hupli M.

J Adv Nurs. 2015 Mar;71(3):620-31. doi: 10.1111/jan.12529. Epub 2014 Sep 23.

PMID:
25250739
29.

Perinatal features of the RASopathies: Noonan syndrome, cardiofaciocutaneous syndrome and Costello syndrome.

Myers A, Bernstein JA, Brennan ML, Curry C, Esplin ED, Fisher J, Homeyer M, Manning MA, Muller EA, Niemi AK, Seaver LH, Hintz SR, Hudgins L.

Am J Med Genet A. 2014 Nov;164A(11):2814-21. doi: 10.1002/ajmg.a.36737. Epub 2014 Sep 22. Review.

PMID:
25250515
30.

[Facilitating scientific data collection systems].

Kunnamo I, Jousimaa J, Niemi A, Nyberg P.

Duodecim. 2014;130(10):1024-30. Finnish.

PMID:
24961063
31.

Degree of glutathione deficiency and redox imbalance depend on subtype of mitochondrial disease and clinical status.

Enns GM, Moore T, Le A, Atkuri K, Shah MK, Cusmano-Ozog K, Niemi AK, Cowan TM.

PLoS One. 2014 Jun 18;9(6):e100001. doi: 10.1371/journal.pone.0100001. eCollection 2014.

32.

Abnormal hepatocellular mitochondria in methylmalonic acidemia.

Wilnai Y, Enns GM, Niemi AK, Higgins J, Vogel H.

Ultrastruct Pathol. 2014 Oct;38(5):309-14. doi: 10.3109/01913123.2014.921657. Epub 2014 Jun 16.

PMID:
24933007
33.

Evidence of redox imbalance in a patient with succinic semialdehyde dehydrogenase deficiency.

Niemi AK, Brown C, Moore T, Enns GM, Cowan TM.

Mol Genet Metab Rep. 2014 Apr 1;1:129-132. eCollection 2014.

34.

Long range correlations and folding angle with applications to α-helical proteins.

Krokhotin A, Nicolis S, Niemi AJ.

J Chem Phys. 2014 Mar 7;140(9):095103. doi: 10.1063/1.4865933.

PMID:
24606382
35.

Kinks, loops, and protein folding, with protein A as an example.

Krokhotin A, Liwo A, Maisuradze GG, Niemi AJ, Scheraga HA.

J Chem Phys. 2014 Jan 14;140(2):025101. doi: 10.1063/1.4855735.

36.

Topology and structural self-organization in folded proteins.

Lundgren M, Krokhotin A, Niemi AJ.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Oct;88(4):042709. Epub 2013 Oct 28.

PMID:
24229215
37.

A comparison of reduced coordinate sets for describing protein structure.

Hinsen K, Hu S, Kneller GR, Niemi AJ.

J Chem Phys. 2013 Sep 28;139(12):124115. doi: 10.1063/1.4821598.

PMID:
24089758
38.

Broad-scale predictability of carbohydrates and exopolymers in Antarctic and Arctic sea ice.

Underwood GJ, Aslam SN, Michel C, Niemi A, Norman L, Meiners KM, Laybourn-Parry J, Paterson H, Thomas DN.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15734-9. doi: 10.1073/pnas.1302870110. Epub 2013 Sep 9.

39.

Soliton driven relaxation dynamics and protein collapse in the villin headpiece.

Krokhotin A, Lundgren M, Niemi AJ, Peng X.

J Phys Condens Matter. 2013 Aug 14;25(32):325103. doi: 10.1088/0953-8984/25/32/325103. Epub 2013 Jul 9.

PMID:
23838560
40.

A new LC-MS/MS method for the clinical determination of reduced and oxidized glutathione from whole blood.

Moore T, Le A, Niemi AK, Kwan T, Cusmano-Ozog K, Enns GM, Cowan TM.

J Chromatogr B Analyt Technol Biomed Life Sci. 2013 Jun 15;929:51-5. doi: 10.1016/j.jchromb.2013.04.004. Epub 2013 Apr 12.

PMID:
23660247
41.

On the role of thermal backbone fluctuations in myoglobin ligand gate dynamics.

Krokhotin A, Niemi AJ, Peng X.

J Chem Phys. 2013 May 7;138(17):175101. doi: 10.1063/1.4801330.

PMID:
23656161
42.

Dissolution of dense non-aqueous phase liquids in vertical fractures: effect of finger residuals and dead-end pools.

Yang Z, Niemi A, Fagerlund F, Illangasekare T, Detwiler RL.

J Contam Hydrol. 2013 Jun;149:88-99. doi: 10.1016/j.jconhyd.2013.03.006. Epub 2013 Mar 29.

PMID:
23608741
43.

Mesoscale distribution and functional diversity of picoeukaryotes in the first-year sea ice of the Canadian Arctic.

Piwosz K, Wiktor JM, Niemi A, Tatarek A, Michel C.

ISME J. 2013 Aug;7(8):1461-71. doi: 10.1038/ismej.2013.39. Epub 2013 Mar 21. Erratum in: ISME J. 2014 May;8(5):1152.

44.

Liver transplantation for urea cycle disorders in pediatric patients: a single-center experience.

Kim IK, Niemi AK, Krueger C, Bonham CA, Concepcion W, Cowan TM, Enns GM, Esquivel CO.

Pediatr Transplant. 2013 Mar;17(2):158-67. doi: 10.1111/petr.12041. Epub 2013 Jan 24.

PMID:
23347504
45.

Solitons and collapse in the λ-repressor protein.

Krokhotin A, Lundgren M, Niemi AJ.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 1):021923. Epub 2012 Aug 30.

PMID:
23005801
46.

Correlation between protein secondary structure, backbone bond angles, and side-chain orientations.

Lundgren M, Niemi AJ.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 1):021904. Epub 2012 Aug 6.

PMID:
23005782
47.

Protein loops, solitons, and side-chain visualization with applications to the left-handed helix region.

Lundgren M, Niemi AJ, Sha F.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jun;85(6 Pt 1):061909. Epub 2012 Jun 11.

PMID:
23005129
48.

Enantiospecific ketoprofen concentrations in plasma after oral and intramuscular administration in growing pigs.

Mustonen K, Niemi A, Raekallio M, Heinonen M, Peltoniemi OA, Palviainen M, Siven M, Peltoniemi M, Vainio O.

Acta Vet Scand. 2012 Sep 21;54:55. doi: 10.1186/1751-0147-54-55.

49.

Report of two patients and further characterization of interstitial 9p13 deletion--a rare but recurrent microdeletion syndrome?

Niemi AK, Kwan A, Hudgins L, Cherry AM, Manning MA.

Am J Med Genet A. 2012 Sep;158A(9):2328-35. doi: 10.1002/ajmg.a.35536. Epub 2012 Aug 7.

PMID:
22887577
50.

Coexistence of phases in a protein heterodimer.

Krokhotin A, Liwo A, Niemi AJ, Scheraga HA.

J Chem Phys. 2012 Jul 21;137(3):035101. doi: 10.1063/1.4734019.

Supplemental Content

Support Center