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White matter changes caused by mild traumatic brain injury in mice evaluated using neurite orientation dispersion and density imaging.

Gazdzinski LM, Mellerup M, Wang T, Adel SAA, Lerch JP, Sled JG, Nieman BJ, Wheeler A.

J Neurotrauma. 2020 Apr 3. doi: 10.1089/neu.2020.6992. [Epub ahead of print]


Translational outcomes in a full gene deletion of ubiquitin protein ligase E3A rat model of Angelman syndrome.

Berg EL, Pride MC, Petkova SP, Lee RD, Copping NA, Shen Y, Adhikari A, Fenton TA, Pedersen LR, Noakes LS, Nieman BJ, Lerch JP, Harris S, Born HA, Peters MM, Deng P, Cameron DL, Fink KD, Beitnere U, O'Geen H, Anderson AE, Dindot SV, Nash KR, Weeber EJ, Wöhr M, Ellegood J, Segal DJ, Silverman JL.

Transl Psychiatry. 2020 Jan 27;10(1):39. doi: 10.1038/s41398-020-0720-2.


p53 Loss Mitigates Early Volume Deficits in the Brains of Irradiated Young Mice.

de Guzman AE, Ahmed M, Li YQ, Wong CS, Nieman BJ.

Int J Radiat Oncol Biol Phys. 2019 Feb 1;103(2):511-520. doi: 10.1016/j.ijrobp.2018.09.014. Epub 2018 Sep 20.


Brain Development and Heart Function after Systemic Single-Agent Chemotherapy in a Mouse Model of Childhood Leukemia Treatment.

Spencer Noakes TL, Przybycien TS, Forwell A, Nicholls C, Zhou YQ, Butcher DT, Weksberg R, Guger SL, Spiegler BJ, Schachar RJ, Hitzler J, Ito S, van der Plas E, Nieman BJ.

Clin Cancer Res. 2018 Dec 1;24(23):6040-6052. doi: 10.1158/1078-0432.CCR-18-0551. Epub 2018 Jul 27.


Mouse MRI shows brain areas relatively larger in males emerge before those larger in females.

Qiu LR, Fernandes DJ, Szulc-Lerch KU, Dazai J, Nieman BJ, Turnbull DH, Foster JA, Palmert MR, Lerch JP.

Nat Commun. 2018 Jul 5;9(1):2615. doi: 10.1038/s41467-018-04921-2.


MRI to Assess Neurological Function.

Nieman BJ, van Eede MC, Spring S, Dazai J, Henkelman RM, Lerch JP.

Curr Protoc Mouse Biol. 2018 Jun;8(2):e44. doi: 10.1002/cpmo.44. Epub 2018 May 22.


Structural covariance of brain region volumes is associated with both structural connectivity and transcriptomic similarity.

Yee Y, Fernandes DJ, French L, Ellegood J, Cahill LS, Vousden DA, Spencer Noakes L, Scholz J, van Eede MC, Nieman BJ, Sled JG, Lerch JP.

Neuroimage. 2018 Oct 1;179:357-372. doi: 10.1016/j.neuroimage.2018.05.028. Epub 2018 May 18.


Continuous manganese delivery via osmotic pumps for manganese-enhanced mouse MRI does not impair spatial learning but leads to skin ulceration.

Vousden DA, Cox E, Allemang-Grand R, Laliberté C, Qiu LR, Lindenmaier Z, Nieman BJ, Lerch JP.

Neuroimage. 2018 Jun;173:411-420. doi: 10.1016/j.neuroimage.2018.02.046. Epub 2018 Mar 2.


Altered brain morphology after focal radiation reveals impact of off-target effects: implications for white matter development and neurogenesis.

Beera KG, Li YQ, Dazai J, Stewart J, Egan S, Ahmed M, Wong CS, Jaffray DA, Nieman BJ.

Neuro Oncol. 2018 May 18;20(6):788-798. doi: 10.1093/neuonc/nox211.


Activated Hedgehog-GLI Signaling Causes Congenital Ureteropelvic Junction Obstruction.

Sheybani-Deloui S, Chi L, Staite MV, Cain JE, Nieman BJ, Henkelman RM, Wainwright BJ, Potter SS, Bagli DJ, Lorenzo AJ, Rosenblum ND.

J Am Soc Nephrol. 2018 Feb;29(2):532-544. doi: 10.1681/ASN.2017050482. Epub 2017 Nov 6.


Characterizing neurocognitive late effects in childhood leukemia survivors using a combination of neuropsychological and cognitive neuroscience measures.

Van Der Plas E, Erdman L, Nieman BJ, Weksberg R, Butcher DT, O'connor DL, Aufreiter S, Hitzler J, Guger SL, Schachar RJ, Ito S, Spiegler BJ.

Child Neuropsychol. 2018 Nov;24(8):999-1014. doi: 10.1080/09297049.2017.1386170. Epub 2017 Oct 10.


Partitioning k-space for cylindrical three-dimensional rapid acquisition with relaxation enhancement imaging in the mouse brain.

Spencer Noakes TL, Henkelman RM, Nieman BJ.

NMR Biomed. 2017 Nov;30(11). doi: 10.1002/nbm.3802. Epub 2017 Sep 13.


Magnetic resonance thermometry of flowing blood.

Heyn CC, Bishop J, Duffin K, Lee W, Dazai J, Spring S, Nieman BJ, Sled JG.

NMR Biomed. 2017 Nov;30(11). doi: 10.1002/nbm.3772. Epub 2017 Jul 7.


Neuroanatomy in mouse models of Rett syndrome is related to the severity of Mecp2 mutation and behavioral phenotypes.

Allemang-Grand R, Ellegood J, Spencer Noakes L, Ruston J, Justice M, Nieman BJ, Lerch JP.

Mol Autism. 2017 Jun 26;8:32. doi: 10.1186/s13229-017-0138-8. eCollection 2017.


Brain structure, working memory and response inhibition in childhood leukemia survivors.

van der Plas E, Schachar RJ, Hitzler J, Crosbie J, Guger SL, Spiegler BJ, Ito S, Nieman BJ.

Brain Behav. 2016 Dec 29;7(2):e00621. doi: 10.1002/brb3.621. eCollection 2017 Feb.


Variations in post-perfusion immersion fixation and storage alter MRI measurements of mouse brain morphometry.

de Guzman AE, Wong MD, Gleave JA, Nieman BJ.

Neuroimage. 2016 Nov 15;142:687-695. doi: 10.1016/j.neuroimage.2016.06.028. Epub 2016 Jun 19.


White and Gray Matter Abnormalities After Cranial Radiation in Children and Mice.

Nieman BJ, de Guzman AE, Gazdzinski LM, Lerch JP, Chakravarty MM, Pipitone J, Strother D, Fryer C, Bouffet E, Laughlin S, Laperriere N, Riggs L, Skocic J, Mabbott DJ.

Int J Radiat Oncol Biol Phys. 2015 Nov 15;93(4):882-91. doi: 10.1016/j.ijrobp.2015.07.2293. Epub 2015 Aug 4.


Neurocognitive Late Effects of Chemotherapy in Survivors of Acute Lymphoblastic Leukemia: Focus on Methotrexate.

van der Plas E, Nieman BJ, Butcher DT, Hitzler JK, Weksberg R, Ito S, Schachar R.

J Can Acad Child Adolesc Psychiatry. 2015 Winter;24(1):25-32. Epub 2015 Mar 4.


4D MEMRI atlas of neonatal FVB/N mouse brain development.

Szulc KU, Lerch JP, Nieman BJ, Bartelle BB, Friedel M, Suero-Abreu GA, Watson C, Joyner AL, Turnbull DH.

Neuroimage. 2015 Sep;118:49-62. doi: 10.1016/j.neuroimage.2015.05.029. Epub 2015 May 30.


Treatment age, dose and sex determine neuroanatomical outcome in irradiated juvenile mice.

de Guzman AE, Gazdzinski LM, Alsop RJ, Stewart JM, Jaffray DA, Wong CS, Nieman BJ.

Radiat Res. 2015 May;183(5):541-9. doi: 10.1667/RR13854.1. Epub 2015 May 4.


Quantifying blood-spinal cord barrier permeability after peripheral nerve injury in the living mouse.

Cahill LS, Laliberté CL, Liu XJ, Bishop J, Nieman BJ, Mogil JS, Sorge RE, Jones CD, Salter MW, Henkelman RM.

Mol Pain. 2014 Sep 13;10:60. doi: 10.1186/1744-8069-10-60.


Whole-brain mapping of behaviourally induced neural activation in mice.

Vousden DA, Epp J, Okuno H, Nieman BJ, van Eede M, Dazai J, Ragan T, Bito H, Frankland PW, Lerch JP, Henkelman RM.

Brain Struct Funct. 2015 Jul;220(4):2043-57. doi: 10.1007/s00429-014-0774-0. Epub 2014 Apr 24.


A method for 3D immunostaining and optical imaging of the mouse brain demonstrated in neural progenitor cells.

Gleave JA, Lerch JP, Henkelman RM, Nieman BJ.

PLoS One. 2013 Aug 6;8(8):e72039. doi: 10.1371/journal.pone.0072039. Print 2013.


Cellular imaging and texture analysis distinguish differences in cellular dynamics in mouse brain tumors.

Gazdzinski LM, Nieman BJ.

Magn Reson Med. 2014 Apr;71(4):1531-41. doi: 10.1002/mrm.24790. Epub 2013 May 9.


MRI analysis of cerebellar and vestibular developmental phenotypes in Gbx2 conditional knockout mice.

Szulc KU, Nieman BJ, Houston EJ, Bartelle BB, Lerch JP, Joyner AL, Turnbull DH.

Magn Reson Med. 2013 Dec;70(6):1707-17. doi: 10.1002/mrm.24597. Epub 2013 Feb 7.


Radiation-induced alterations in mouse brain development characterized by magnetic resonance imaging.

Gazdzinski LM, Cormier K, Lu FG, Lerch JP, Wong CS, Nieman BJ.

Int J Radiat Oncol Biol Phys. 2012 Dec 1;84(5):e631-8. doi: 10.1016/j.ijrobp.2012.06.053. Epub 2012 Sep 11.


If the skull fits: magnetic resonance imaging and microcomputed tomography for combined analysis of brain and skull phenotypes in the mouse.

Nieman BJ, Blank MC, Roman BB, Henkelman RM, Millen KJ.

Physiol Genomics. 2012 Oct 17;44(20):992-1002. doi: 10.1152/physiolgenomics.00093.2012. Epub 2012 Sep 4.


High-resolution MRI of early-stage mouse embryos.

Parasoglou P, Berrios-Otero CA, Nieman BJ, Turnbull DH.

NMR Biomed. 2013 Feb;26(2):224-31. doi: 10.1002/nbm.2843. Epub 2012 Aug 22.


Neuroanatomical phenotyping of the mouse brain with three-dimensional autofluorescence imaging.

Gleave JA, Wong MD, Dazai J, Altaf M, Henkelman RM, Lerch JP, Nieman BJ.

Physiol Genomics. 2012 Aug 1;44(15):778-85. doi: 10.1152/physiolgenomics.00055.2012. Epub 2012 Jun 19.


Wanted dead or alive? The tradeoff between in-vivo versus ex-vivo MR brain imaging in the mouse.

Lerch JP, Gazdzinski L, Germann J, Sled JG, Henkelman RM, Nieman BJ.

Front Neuroinform. 2012 Mar 23;6:6. doi: 10.3389/fninf.2012.00006. eCollection 2012.


Genes into geometry: imaging for mouse development in 3D.

Nieman BJ, Wong MD, Henkelman RM.

Curr Opin Genet Dev. 2011 Oct;21(5):638-46. doi: 10.1016/j.gde.2011.08.009. Epub 2011 Sep 8. Review.


Mouse phenotyping with MRI.

Chen XJ, Nieman BJ.

Methods Mol Biol. 2011;771:595-631. doi: 10.1007/978-1-61779-219-9_31.


In utero phenotyping of mouse embryonic vasculature with MRI.

Berrios-Otero CA, Nieman BJ, Parasoglou P, Turnbull DH.

Magn Reson Med. 2012 Jan;67(1):251-7. doi: 10.1002/mrm.22991. Epub 2011 May 16.


Morphological and functional midbrain phenotypes in Fibroblast Growth Factor 17 mutant mice detected by Mn-enhanced MRI.

Yu X, Nieman BJ, Sudarov A, Szulc KU, Abdollahian DJ, Bhatia N, Lalwani AK, Joyner AL, Turnbull DH.

Neuroimage. 2011 Jun 1;56(3):1251-8. doi: 10.1016/j.neuroimage.2011.02.068. Epub 2011 Feb 26.


Ultrasound and magnetic resonance microimaging of mouse development.

Nieman BJ, Turnbull DH.

Methods Enzymol. 2010;476:379-400. doi: 10.1016/S0076-6879(10)76021-3.


In vivo MRI of neural cell migration dynamics in the mouse brain.

Nieman BJ, Shyu JY, Rodriguez JJ, Garcia AD, Joyner AL, Turnbull DH.

Neuroimage. 2010 Apr 1;50(2):456-64. doi: 10.1016/j.neuroimage.2009.12.107. Epub 2010 Jan 4.


Three-dimensional micro-MRI analysis of cerebral artery development in mouse embryos.

Berrios-Otero CA, Wadghiri YZ, Nieman BJ, Joyner AL, Turnbull DH.

Magn Reson Med. 2009 Dec;62(6):1431-9. doi: 10.1002/mrm.22113.


Three-dimensional, in vivo MRI with self-gating and image coregistration in the mouse.

Nieman BJ, Szulc KU, Turnbull DH.

Magn Reson Med. 2009 May;61(5):1148-57. doi: 10.1002/mrm.21945.


Oxygen-enhanced MR imaging of mice lungs.

Watt KN, Bishop J, Nieman BJ, Henkelman RM, Chen XJ.

Magn Reson Med. 2008 Jun;59(6):1412-21. doi: 10.1002/mrm.21517.


MR technology for biological studies in mice.

Nieman BJ, Bishop J, Dazai J, Bock NA, Lerch JP, Feintuch A, Chen XJ, Sled JG, Henkelman RM.

NMR Biomed. 2007 May;20(3):291-303. Review.


Mouse behavioral mutants have neuroimaging abnormalities.

Nieman BJ, Lerch JP, Bock NA, Chen XJ, Sled JG, Henkelman RM.

Hum Brain Mapp. 2007 Jun;28(6):567-75.


Forward genetic screen of mouse reveals dominant missense mutation in the P/Q-type voltage-dependent calcium channel, CACNA1A.

Xie G, Clapcote SJ, Nieman BJ, Tallerico T, Huang Y, Vukobradovic I, Cordes SP, Osborne LR, Rossant J, Sled JG, Henderson JT, Roder JC.

Genes Brain Behav. 2007 Nov;6(8):717-27. Epub 2007 Mar 21.


Anatomical phenotyping in the brain and skull of a mutant mouse by magnetic resonance imaging and computed tomography.

Nieman BJ, Flenniken AM, Adamson SL, Henkelman RM, Sled JG.

Physiol Genomics. 2006 Jan 12;24(2):154-62.


In vivo multiple-mouse MRI at 7 Tesla.

Bock NA, Nieman BJ, Bishop JB, Mark Henkelman R.

Magn Reson Med. 2005 Nov;54(5):1311-6.


Magnetic resonance imaging for detection and analysis of mouse phenotypes.

Nieman BJ, Bock NA, Bishop J, Chen XJ, Sled JG, Rossant J, Henkelman RM.

NMR Biomed. 2005 Nov;18(7):447-68. Review.


Gradient hysteresis in MRI and NMR experiments.

Nieman BJ, Bishop J, Henkelman RM.

J Magn Reson. 2005 Dec;177(2):336-40. Epub 2005 Sep 26.


A Gja1 missense mutation in a mouse model of oculodentodigital dysplasia.

Flenniken AM, Osborne LR, Anderson N, Ciliberti N, Fleming C, Gittens JE, Gong XQ, Kelsey LB, Lounsbury C, Moreno L, Nieman BJ, Peterson K, Qu D, Roscoe W, Shao Q, Tong D, Veitch GI, Voronina I, Vukobradovic I, Wood GA, Zhu Y, Zirngibl RA, Aubin JE, Bai D, Bruneau BG, Grynpas M, Henderson JE, Henkelman RM, McKerlie C, Sled JG, Stanford WL, Laird DW, Kidder GM, Adamson SL, Rossant J.

Development. 2005 Oct;132(19):4375-86.


Fast spin-echo for multiple mouse magnetic resonance phenotyping.

Nieman BJ, Bock NA, Bishop J, Sled JG, Josette Chen X, Mark Henkelman R.

Magn Reson Med. 2005 Sep;54(3):532-7.


Multiple mouse biological loading and monitoring system for MRI.

Dazai J, Bock NA, Nieman BJ, Davidson LM, Henkelman RM, Chen XJ.

Magn Reson Med. 2004 Oct;52(4):709-15.


Comprehensive transthoracic cardiac imaging in mice using ultrasound biomicroscopy with anatomical confirmation by magnetic resonance imaging.

Zhou YQ, Foster FS, Nieman BJ, Davidson L, Chen XJ, Henkelman RM.

Physiol Genomics. 2004 Jul 8;18(2):232-44.


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