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Items: 1 to 50 of 292

1.

New Training to Meet the Global Phosphorus Challenge.

Reitzel K, Bennett WW, Berger N, Brownlie WJ, Bruun S, Christensen ML, Cordell D, van Dijk K, Egemose S, Eigner H, Glud RN, Grönfors O, Hermann L, Houot S, Hupfer M, Jacobs B, Korving L, Kjærgaard C, Liimatainen H, Van Loosdrecht MCM, Macintosh KA, Magid J, Maia F, Martin-Ortega J, McGrath J, Meulepas R, Murry M, Neset TS, Neumann G, Nielsen UG, Nielsen PH, O'Flaherty V, Qu H, Santner J, Seufert V, Spears B, Stringer LC, Stutter M, Verburg PH, Wilfert P, Williams PN, Metson GS.

Environ Sci Technol. 2019 Aug 6;53(15):8479-8481. doi: 10.1021/acs.est.9b03519. Epub 2019 Jul 8. No abstract available.

PMID:
31283194
2.

Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta.

Moeller FU, Webster NS, Herbold CW, Behnam F, Domman D, Albertsen M, Mooshammer M, Markert S, Turaev D, Becher D, Rattei T, Schweder T, Richter A, Watzka M, Nielsen PH, Wagner M.

Environ Microbiol. 2019 Jul 4. doi: 10.1111/1462-2920.14732. [Epub ahead of print]

PMID:
31271506
3.

"Candidatus Accumulibacter delftensis": A clade IC novel polyphosphate-accumulating organism without denitrifying activity on nitrate.

Rubio-Rincón FJ, Weissbrodt DG, Lopez-Vazquez CM, Welles L, Abbas B, Albertsen M, Nielsen PH, van Loosdrecht MCM, Brdjanovic D.

Water Res. 2019 Sep 15;161:136-151. doi: 10.1016/j.watres.2019.03.053. Epub 2019 Jun 2.

4.

Editorial overview: Integrating biotechnology and microbial ecology in urban water infrastructure through a microbiome continuum viewpoint.

Raskin L, Nielsen PH.

Curr Opin Biotechnol. 2019 Jun;57:iii-vi. doi: 10.1016/j.copbio.2019.05.001. Epub 2019 Jun 3. No abstract available.

PMID:
31171429
5.

Global diversity and biogeography of bacterial communities in wastewater treatment plants.

Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown M, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, Yang Y, Deng Y, Tu Q, Wang A; Global Water Microbiome Consortium, Zhang T, He Z, Keller J, Nielsen PH, Alvarez PJJ, Criddle CS, Wagner M, Tiedje JM, He Q, Curtis TP, Stahl DA, Alvarez-Cohen L, Rittmann BE, Wen X, Zhou J.

Nat Microbiol. 2019 Jul;4(7):1183-1195. doi: 10.1038/s41564-019-0426-5. Epub 2019 May 13.

PMID:
31086312
6.

The Proteome of Tetrasphaera elongata is adapted to Changing Conditions in Wastewater Treatment Plants.

Herbst FA, Dueholm MS, Wimmer R, Nielsen PH.

Proteomes. 2019 Apr 25;7(2). pii: E16. doi: 10.3390/proteomes7020016.

7.

Extraction and quantification of polyphosphates in activated sludge from waste water treatment plants by 31P NMR spectroscopy.

Staal LB, Petersen AB, Jørgensen CA, Nielsen UG, Nielsen PH, Reitzel K.

Water Res. 2019 Jun 15;157:346-355. doi: 10.1016/j.watres.2019.03.065. Epub 2019 Mar 29.

PMID:
30965161
8.

Re-evaluating the microbiology of the enhanced biological phosphorus removal process.

Nielsen PH, McIlroy SJ, Albertsen M, Nierychlo M.

Curr Opin Biotechnol. 2019 Jun;57:111-118. doi: 10.1016/j.copbio.2019.03.008. Epub 2019 Apr 5. Review.

9.

Resolving the individual contribution of key microbial populations to enhanced biological phosphorus removal with Raman-FISH.

Fernando EY, McIlroy SJ, Nierychlo M, Herbst FA, Petriglieri F, Schmid MC, Wagner M, Nielsen JL, Nielsen PH.

ISME J. 2019 Aug;13(8):1933-1946. doi: 10.1038/s41396-019-0399-7. Epub 2019 Mar 20.

PMID:
30894691
10.

Influence of Mitroflow bioprosthesis structural valve deterioration on cardiac morbidity.

Waziri F, Karunanithi Z, Løgstrup BB, Hjortdal V, Nielsen PH, Poulsen SH.

J Cardiothorac Surg. 2019 Mar 18;14(1):62. doi: 10.1186/s13019-019-0875-1.

11.

Proteogenomic Refinement of the Neomegalonema perideroedesT Genome Annotation.

Herbst FA, Gonçalves SCL, Behr T, McIlroy SJ, Nielsen PH.

Proteomics. 2019 May;19(9):e1800330. doi: 10.1002/pmic.201800330.

PMID:
30865376
12.

Denitrification activity of polyphosphate accumulating organisms (PAOs) in full-scale wastewater treatment plants.

Lanham AB, Oehmen A, Carvalho G, Saunders AM, Nielsen PH, Reis MAM.

Water Sci Technol. 2018 Dec;78(12):2449-2458. doi: 10.2166/wst.2018.517.

PMID:
30767910
13.

The Composition and Implications of Polyphosphate-Metal in Enhanced Biological Phosphorus Removal Systems.

Li Y, Rahman SM, Li G, Fowle W, Nielsen PH, Gu AZ.

Environ Sci Technol. 2019 Feb 5;53(3):1536-1544. doi: 10.1021/acs.est.8b06827. Epub 2019 Jan 25.

PMID:
30589545
14.

Comparison of Survival After Aortic Valve Replacement With Mitroflow or Perimount Prostheses.

Aasbjerg K, Mortensen PE, Nørgaard MA, Rytgaard HC, Gerds TA, Søgaard P, Torp-Pedersen C, Mortensen RN, Bagge BJ, Køber L, Nielsen PH.

Semin Thorac Cardiovasc Surg. 2018 Dec 7. pii: S1043-0679(18)30361-7. doi: 10.1053/j.semtcvs.2018.11.016. [Epub ahead of print]

PMID:
30529158
15.

The Sheaths of Methanospirillum Are Made of a New Type of Amyloid Protein.

Christensen LFB, Hansen LM, Finster K, Christiansen G, Nielsen PH, Otzen DE, Dueholm MS.

Front Microbiol. 2018 Nov 13;9:2729. doi: 10.3389/fmicb.2018.02729. eCollection 2018.

16.

Polyphosphate-accumulating organisms in full-scale tropical wastewater treatment plants use diverse carbon sources.

Qiu G, Zuniga-Montanez R, Law Y, Thi SS, Nguyen TQN, Eganathan K, Liu X, Nielsen PH, Williams RBH, Wuertz S.

Water Res. 2019 Feb 1;149:496-510. doi: 10.1016/j.watres.2018.11.011. Epub 2018 Nov 9.

PMID:
30476778
17.

The morphology and metabolic potential of the Chloroflexi in full-scale activated sludge wastewater treatment plants.

Nierychlo M, Milobedzka A, Petriglieri F, McIlroy B, Nielsen PH, McIlroy SJ.

FEMS Microbiol Ecol. 2019 Feb 1;95(2). doi: 10.1093/femsec/fiy228.

PMID:
30476032
18.

Elucidating performance failures in use of granular sludge for nutrient removal from domestic wastewater in a warm coastal climate region.

Guimarães LB, Wagner J, Akaboci TRV, Daudt GC, Nielsen PH, van Loosdrecht MCM, Weissbrodt DG, da Costa RHR.

Environ Technol. 2018 Nov 22:1-33. doi: 10.1080/09593330.2018.1551938. [Epub ahead of print]

PMID:
30465694
19.

In situ visualisation of the abundant Chloroflexi populations in full-scale anaerobic digesters and the fate of immigrating species.

Petriglieri F, Nierychlo M, Nielsen PH, McIlroy SJ.

PLoS One. 2018 Nov 1;13(11):e0206255. doi: 10.1371/journal.pone.0206255. eCollection 2018.

20.

Genomic insights into Candidatus Amarolinea aalborgensis gen. nov., sp. nov., associated with settleability problems in wastewater treatment plants.

Andersen MH, McIlroy SJ, Nierychlo M, Nielsen PH, Albertsen M.

Syst Appl Microbiol. 2019 Jan;42(1):77-84. doi: 10.1016/j.syapm.2018.08.001. Epub 2018 Aug 16.

21.

Plasma Concentrations of Long Chain N-3 Fatty Acids in Early and Mid-Pregnancy and Risk of Early Preterm Birth.

Olsen SF, Halldorsson TI, Thorne-Lyman AL, Strøm M, Gørtz S, Granstrøm C, Nielsen PH, Wohlfahrt J, Lykke JA, Langhoff-Roos J, Cohen AS, Furtado JD, Giovannucci EL, Zhou W.

EBioMedicine. 2018 Sep;35:325-333. doi: 10.1016/j.ebiom.2018.07.009. Epub 2018 Aug 3.

22.

Characterization of the First "Candidatus Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria.

Kitzinger K, Koch H, Lücker S, Sedlacek CJ, Herbold C, Schwarz J, Daebeler A, Mueller AJ, Lukumbuzya M, Romano S, Leisch N, Karst SM, Kirkegaard R, Albertsen M, Nielsen PH, Wagner M, Daims H.

MBio. 2018 Jul 10;9(4). pii: e01186-18. doi: 10.1128/mBio.01186-18.

23.

Toward Better Understanding of EBPR Systems via Linking Raman-Based Phenotypic Profiling with Phylogenetic Diversity.

Li Y, Cope HA, Rahman SM, Li G, Nielsen PH, Elfick A, Gu AZ.

Environ Sci Technol. 2018 Aug 7;52(15):8596-8606. doi: 10.1021/acs.est.8b01388. Epub 2018 Jul 24.

PMID:
29943965
24.

Novel prosthecate bacteria from the candidate phylum Acetothermia.

Hao L, McIlroy SJ, Kirkegaard RH, Karst SM, Fernando WEY, Aslan H, Meyer RL, Albertsen M, Nielsen PH, Dueholm MS.

ISME J. 2018 Sep;12(9):2225-2237. doi: 10.1038/s41396-018-0187-9. Epub 2018 Jun 8.

25.

Genomic and in Situ Analyses Reveal the Micropruina spp. as Abundant Fermentative Glycogen Accumulating Organisms in Enhanced Biological Phosphorus Removal Systems.

McIlroy SJ, Onetto CA, McIlroy B, Herbst FA, Dueholm MS, Kirkegaard RH, Fernando E, Karst SM, Nierychlo M, Kristensen JM, Eales KL, Grbin PR, Wimmer R, Nielsen PH.

Front Microbiol. 2018 May 23;9:1004. doi: 10.3389/fmicb.2018.01004. eCollection 2018.

26.

Monitoring foaming potential in anaerobic digesters.

Jiang C, Qi R, Hao L, McIlroy SJ, Nielsen PH.

Waste Manag. 2018 May;75:280-288. doi: 10.1016/j.wasman.2018.02.021. Epub 2018 Mar 2.

PMID:
29478959
27.

Peatland Acidobacteria with a dissimilatory sulfur metabolism.

Hausmann B, Pelikan C, Herbold CW, Köstlbacher S, Albertsen M, Eichorst SA, Glavina Del Rio T, Huemer M, Nielsen PH, Rattei T, Stingl U, Tringe SG, Trojan D, Wentrup C, Woebken D, Pester M, Loy A.

ISME J. 2018 Jun;12(7):1729-1742. doi: 10.1038/s41396-018-0077-1. Epub 2018 Feb 23.

28.

Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.

Karst SM, Dueholm MS, McIlroy SJ, Kirkegaard RH, Nielsen PH, Albertsen M.

Nat Biotechnol. 2018 Feb;36(2):190-195. doi: 10.1038/nbt.4045. Epub 2018 Jan 1.

PMID:
29291348
29.

Structural valve deterioration in the Mitroflow biological heart valve prosthesis.

Issa IF, Poulsen SH, Waziri F, Torp Pedersen C, Nielsen PH, Riber L, Dahl JS, Søgaard P, Nørgaard MA, Møller JE.

Eur J Cardiothorac Surg. 2018 Jan 1;53(1):136-142. doi: 10.1093/ejcts/ezx321.

PMID:
29029140
30.

Quality assurance of the Western Denmark Heart Registry, a population-based healthcare register.

Rasmussen LA, Bøtker HE, Jensen LO, Ravkilde J, Riber L, Nielsen PH, Andreasen JJ, Jakobsen CJ.

Dan Med J. 2017 Oct;64(10). pii: A5414.

PMID:
28975887
31.

The impact of immigration on microbial community composition in full-scale anaerobic digesters.

Kirkegaard RH, McIlroy SJ, Kristensen JM, Nierychlo M, Karst SM, Dueholm MS, Albertsen M, Nielsen PH.

Sci Rep. 2017 Aug 24;7(1):9343. doi: 10.1038/s41598-017-09303-0.

32.

Functional redundancy ensures performance robustness in 3-stage PHA-producing mixed cultures under variable feed operation.

Carvalho G, Pedras I, Karst SM, Oliveira CSS, Duque AF, Nielsen PH, Reis MAM.

N Biotechnol. 2018 Jan 25;40(Pt B):207-217. doi: 10.1016/j.nbt.2017.08.007. Epub 2017 Aug 22.

PMID:
28838619
33.

Microbial biotechnology and circular economy in wastewater treatment.

Nielsen PH.

Microb Biotechnol. 2017 Sep;10(5):1102-1105. doi: 10.1111/1751-7915.12821. Epub 2017 Aug 22.

34.

A new class of hybrid secretion system is employed in Pseudomonas amyloid biogenesis.

Rouse SL, Hawthorne WJ, Berry JL, Chorev DS, Ionescu SA, Lambert S, Stylianou F, Ewert W, Mackie U, Morgan RML, Otzen D, Herbst FA, Nielsen PH, Dueholm M, Bayley H, Robinson CV, Hare S, Matthews S.

Nat Commun. 2017 Aug 15;8(1):263. doi: 10.1038/s41467-017-00361-6.

35.

Metagenomes from deep Baltic Sea sediments reveal how past and present environmental conditions determine microbial community composition.

Marshall IPG, Karst SM, Nielsen PH, Jørgensen BB.

Mar Genomics. 2018 Feb;37:58-68. doi: 10.1016/j.margen.2017.08.004. Epub 2017 Aug 12.

PMID:
28811148
36.

Direct Identification of Functional Amyloid Proteins by Label-Free Quantitative Mass Spectrometry.

Danielsen HN, Hansen SH, Herbst FA, Kjeldal H, Stensballe A, Nielsen PH, Dueholm MS.

Biomolecules. 2017 Aug 4;7(3). pii: E58. doi: 10.3390/biom7030058.

37.

Membrane filtration device for studying compression of fouling layers in membrane bioreactors.

Jørgensen MK, Bugge TV, Larsen P, Nielsen PH, Christensen ML.

PLoS One. 2017 Jul 27;12(7):e0181652. doi: 10.1371/journal.pone.0181652. eCollection 2017.

38.

Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge.

McIlroy SJ, Kirkegaard RH, Dueholm MS, Fernando E, Karst SM, Albertsen M, Nielsen PH.

Front Microbiol. 2017 Jun 23;8:1134. doi: 10.3389/fmicb.2017.01134. eCollection 2017.

39.

Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge.

Wilkens C, Busk PK, Pilgaard B, Zhang WJ, Nielsen KL, Nielsen PH, Lange L.

Biotechnol Biofuels. 2017 Jun 21;10:158. doi: 10.1186/s13068-017-0840-y. eCollection 2017.

40.

Metabolism and ecological niche of Tetrasphaera and Ca. Accumulibacter in enhanced biological phosphorus removal.

Marques R, Santos J, Nguyen H, Carvalho G, Noronha JP, Nielsen PH, Reis MAM, Oehmen A.

Water Res. 2017 Oct 1;122:159-171. doi: 10.1016/j.watres.2017.04.072. Epub 2017 Apr 29.

PMID:
28599161
41.

Thirty-Year Mortality After Coronary Artery Bypass Graft Surgery: A Danish Nationwide Population-Based Cohort Study.

Adelborg K, Horváth-Puhó E, Schmidt M, Munch T, Pedersen L, Nielsen PH, Bøtker HE, Toft Sørensen H.

Circ Cardiovasc Qual Outcomes. 2017 May;10(5):e002708. doi: 10.1161/CIRCOUTCOMES.116.002708.

PMID:
28500223
42.

A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems.

Stokholm-Bjerregaard M, McIlroy SJ, Nierychlo M, Karst SM, Albertsen M, Nielsen PH.

Front Microbiol. 2017 Apr 27;8:718. doi: 10.3389/fmicb.2017.00718. eCollection 2017.

43.

Unified understanding of physico-chemical properties of activated sludge and fouling propensity.

Jørgensen MK, Nierychlo M, Nielsen AH, Larsen P, Christensen ML, Nielsen PH.

Water Res. 2017 Sep 1;120:117-132. doi: 10.1016/j.watres.2017.04.056. Epub 2017 Apr 26.

PMID:
28478289
44.

MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups.

McIlroy SJ, Kirkegaard RH, McIlroy B, Nierychlo M, Kristensen JM, Karst SM, Albertsen M, Nielsen PH.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax016.

45.

Long-term effects of sulphide on the enhanced biological removal of phosphorus: The symbiotic role of Thiothrix caldifontis.

Rubio-Rincón FJ, Welles L, Lopez-Vazquez CM, Nierychlo M, Abbas B, Geleijnse M, Nielsen PH, van Loosdrecht MCM, Brdjanovic D.

Water Res. 2017 Jun 1;116:53-64. doi: 10.1016/j.watres.2017.03.017. Epub 2017 Mar 7.

46.

The role of inoculum and reactor configuration for microbial community composition and dynamics in mainstream partial nitritation anammox reactors.

Agrawal S, Karst SM, Gilbert EM, Horn H, Nielsen PH, Lackner S.

Microbiologyopen. 2017 Aug;6(4). doi: 10.1002/mbo3.456. Epub 2017 Mar 10.

47.

Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system.

Sauder LA, Albertsen M, Engel K, Schwarz J, Nielsen PH, Wagner M, Neufeld JD.

ISME J. 2017 May;11(5):1142-1157. doi: 10.1038/ismej.2016.192. Epub 2017 Feb 14.

48.

Deep Sternal Wound Infection after Open-Heart Surgery: A 13-Year Single Institution Analysis.

Juhl AA, Hody S, Videbaek TS, Damsgaard TE, Nielsen PH.

Ann Thorac Cardiovasc Surg. 2017 Apr 20;23(2):76-82. doi: 10.5761/atcs.oa.16-00196. Epub 2017 Feb 3.

49.

Non-denitrifying polyphosphate accumulating organisms obviate requirement for anaerobic condition.

Cokro AA, Law Y, Williams RBH, Cao Y, Nielsen PH, Wuertz S.

Water Res. 2017 Mar 15;111:393-403. doi: 10.1016/j.watres.2017.01.006. Epub 2017 Jan 3.

PMID:
28110143
50.

Comparing culture and molecular methods for the identification of microorganisms involved in necrotizing soft tissue infections.

Rudkjøbing VB, Thomsen TR, Xu Y, Melton-Kreft R, Ahmed A, Eickhardt S, Bjarnsholt T, Poulsen SS, Nielsen PH, Earl JP, Ehrlich GD, Moser C.

BMC Infect Dis. 2016 Nov 8;16(1):652.

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