Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 80

1.

Production of zosteric acid and other sulfated phenolic biochemicals in microbial cell factories.

Jendresen CB, Nielsen AT.

Nat Commun. 2019 Sep 6;10(1):4071. doi: 10.1038/s41467-019-12022-x.

2.

Genome-wide systematic identification of methyltransferase recognition and modification patterns.

Jensen TØ, Tellgren-Roth C, Redl S, Maury J, Jacobsen SAB, Pedersen LE, Nielsen AT.

Nat Commun. 2019 Aug 19;10(1):3311. doi: 10.1038/s41467-019-11179-9.

3.

Brief oxygenation events in locally anoxic oceans during the Cambrian solves the animal breathing paradox.

Dahl TW, Siggaard-Andersen ML, Schovsbo NH, Persson DO, Husted S, Hougård IW, Dickson AJ, Kjær K, Nielsen AT.

Sci Rep. 2019 Aug 12;9(1):11669. doi: 10.1038/s41598-019-48123-2.

4.

Generation of an E. coli platform strain for improved sucrose utilization using adaptive laboratory evolution.

Mohamed ET, Mundhada H, Landberg J, Cann I, Mackie RI, Nielsen AT, Herrgård MJ, Feist AM.

Microb Cell Fact. 2019 Jun 29;18(1):116. doi: 10.1186/s12934-019-1165-2.

5.

Simultaneous quantification of multiple bacterial metabolites using surface-enhanced Raman scattering.

Morelli L, Centorbi FA, Ilchenko O, Jendresen CB, Demarchi D, Nielsen AT, Zór K, Boisen A.

Analyst. 2019 Feb 25;144(5):1600-1607. doi: 10.1039/c8an02128g.

PMID:
30629052
6.

Genome editing of lactic acid bacteria: opportunities for food, feed, pharma and biotech.

Börner RA, Kandasamy V, Axelsen AM, Nielsen AT, Bosma EF.

FEMS Microbiol Lett. 2019 Jan 1;366(1). doi: 10.1093/femsle/fny291.

7.

Extraction, Enrichment, and in situ Electrochemical Detection on Lab-on-a-Disc: Monitoring the Production of a Bacterial Secondary Metabolite.

Andreasen SZ, Sanger K, Jendresen CB, Nielsen AT, Emnéus J, Boisen A, Zór K.

ACS Sens. 2019 Feb 22;4(2):398-405. doi: 10.1021/acssensors.8b01277. Epub 2018 Dec 21.

PMID:
30525464
8.

The Sirius Passet Lagerstätte of North Greenland-A geochemical window on early Cambrian low-oxygen environments and ecosystems.

Hammarlund EU, Smith MP, Rasmussen JA, Nielsen AT, Canfield DE, Harper DAT.

Geobiology. 2019 Jan;17(1):12-26. doi: 10.1111/gbi.12315. Epub 2018 Sep 27.

9.

Brain and eyes of Kerygmachela reveal protocerebral ancestry of the panarthropod head.

Park TS, Kihm JH, Woo J, Park C, Lee WY, Smith MP, Harper DAT, Young F, Nielsen AT, Vinther J.

Nat Commun. 2018 Mar 9;9(1):1019. doi: 10.1038/s41467-018-03464-w.

10.

Injection molded lab-on-a-disc platform for screening of genetically modified E. coli using liquid-liquid extraction and surface enhanced Raman scattering.

Morelli L, Serioli L, Centorbi FA, Jendresen CB, Matteucci M, Ilchenko O, Demarchi D, Nielsen AT, Zór K, Boisen A.

Lab Chip. 2018 Mar 13;18(6):869-877. doi: 10.1039/c7lc01217a.

PMID:
29450440
11.

A Capture-SELEX Strategy for Multiplexed Selection of RNA Aptamers Against Small Molecules.

Lauridsen LH, Doessing HB, Long KS, Nielsen AT.

Methods Mol Biol. 2018;1671:291-306. doi: 10.1007/978-1-4939-7295-1_18.

PMID:
29170966
12.

Multiplex Genome Editing in Escherichia coli.

Jensen SI, Nielsen AT.

Methods Mol Biol. 2018;1671:119-129. doi: 10.1007/978-1-4939-7295-1_8.

PMID:
29170956
13.

Bacterial Genome Editing Strategy for Control of Transcription and Protein Stability.

Lauritsen I, Martínez V, Ronda C, Nielsen AT, Nørholm MHH.

Methods Mol Biol. 2018;1671:27-37. doi: 10.1007/978-1-4939-7295-1_3.

PMID:
29170951
14.

Genome-wide identification of tolerance mechanisms toward p-coumaric acid in Pseudomonas putida.

Calero P, Jensen SI, Bojanovič K, Lennen RM, Koza A, Nielsen AT.

Biotechnol Bioeng. 2018 Mar;115(3):762-774. doi: 10.1002/bit.26495. Epub 2017 Nov 28.

15.

Quantification of a bacterial secondary metabolite by SERS combined with SLM extraction for bioprocess monitoring.

Morelli L, Andreasen SZ, Jendresen CB, Nielsen AT, Emnéus J, Zór K, Boisen A.

Analyst. 2017 Nov 20;142(23):4553-4559. doi: 10.1039/c7an01393k.

PMID:
29114664
16.

CRISPR/Cas9-based genome editing for simultaneous interference with gene expression and protein stability.

Martínez V, Lauritsen I, Hobel T, Li S, Nielsen AT, Nørholm MHH.

Nucleic Acids Res. 2017 Nov 16;45(20):e171. doi: 10.1093/nar/gkx797.

17.

Application of the thermostable β-galactosidase, BgaB, from Geobacillus stearothermophilus as a versatile reporter under anaerobic and aerobic conditions.

Jensen TØ, Pogrebnyakov I, Falkenberg KB, Redl S, Nielsen AT.

AMB Express. 2017 Sep 6;7(1):169. doi: 10.1186/s13568-017-0469-z.

18.

Thermodynamics and economic feasibility of acetone production from syngas using the thermophilic production host Moorella thermoacetica.

Redl S, Sukumara S, Ploeger T, Wu L, Ølshøj Jensen T, Nielsen AT, Noorman H.

Biotechnol Biofuels. 2017 Jun 12;10:150. doi: 10.1186/s13068-017-0827-8. eCollection 2017.

19.

Lactobacilli and pediococci as versatile cell factories - Evaluation of strain properties and genetic tools.

Bosma EF, Forster J, Nielsen AT.

Biotechnol Adv. 2017 Jul;35(4):419-442. doi: 10.1016/j.biotechadv.2017.04.002. Epub 2017 Apr 7. Review.

20.

Surface Enhanced Raman Scattering for Quantification of p-Coumaric Acid Produced by Escherichia coli.

Morelli L, Zór K, Jendresen CB, Rindzevicius T, Schmidt MS, Nielsen AT, Boisen A.

Anal Chem. 2017 Apr 4;89(7):3981-3987. doi: 10.1021/acs.analchem.6b04428. Epub 2017 Mar 16.

PMID:
28256124
21.

Genetic toolbox for controlled expression of functional proteins in Geobacillus spp.

Pogrebnyakov I, Jendresen CB, Nielsen AT.

PLoS One. 2017 Feb 2;12(2):e0171313. doi: 10.1371/journal.pone.0171313. eCollection 2017.

22.

Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution.

Mundhada H, Seoane JM, Schneider K, Koza A, Christensen HB, Klein T, Phaneuf PV, Herrgard M, Feist AM, Nielsen AT.

Metab Eng. 2017 Jan;39:141-150. doi: 10.1016/j.ymben.2016.11.008. Epub 2016 Nov 29.

PMID:
27908688
23.

Enhanced protein and biochemical production using CRISPRi-based growth switches.

Li S, Jendresen CB, Grünberger A, Ronda C, Jensen SI, Noack S, Nielsen AT.

Metab Eng. 2016 Nov;38:274-284. doi: 10.1016/j.ymben.2016.09.003. Epub 2016 Sep 16.

PMID:
27647432
24.

Genome-wide Escherichia coli stress response and improved tolerance towards industrially relevant chemicals.

Rau MH, Calero P, Lennen RM, Long KS, Nielsen AT.

Microb Cell Fact. 2016 Oct 13;15(1):176.

25.

The Ssr protein (T1E_1405) from Pseudomonas putida DOT-T1E enables oligonucleotide-based recombineering in platform strain P. putida EM42.

Aparicio T, Jensen SI, Nielsen AT, de Lorenzo V, Martínez-García E.

Biotechnol J. 2016 Oct;11(10):1309-1319. doi: 10.1002/biot.201600317. Epub 2016 Jul 15.

PMID:
27367544
26.

Broad-Host-Range ProUSER Vectors Enable Fast Characterization of Inducible Promoters and Optimization of p-Coumaric Acid Production in Pseudomonas putida KT2440.

Calero P, Jensen SI, Nielsen AT.

ACS Synth Biol. 2016 Jul 15;5(7):741-53. doi: 10.1021/acssynbio.6b00081. Epub 2016 May 4.

PMID:
27092814
27.

CRMAGE: CRISPR Optimized MAGE Recombineering.

Ronda C, Pedersen LE, Sommer MO, Nielsen AT.

Sci Rep. 2016 Jan 22;6:19452. doi: 10.1038/srep19452.

28.

Predictable tuning of protein expression in bacteria.

Bonde MT, Pedersen M, Klausen MS, Jensen SI, Wulff T, Harrison S, Nielsen AT, Herrgård MJ, Sommer MO.

Nat Methods. 2016 Mar;13(3):233-6. doi: 10.1038/nmeth.3727. Epub 2016 Jan 11.

PMID:
26752768
29.

The nature of Ordovician limestone-marl alternations in the Oslo-Asker District (Norway): witnesses of primary glacio-eustasy or diagenetic rhythms?

Amberg CE, Collart T, Salenbien W, Egger LM, Munnecke A, Nielsen AT, Monnet C, Hammer Ø, Vandenbroucke TR.

Sci Rep. 2016 Jan 7;6:18787. doi: 10.1038/srep18787.

30.

Onset of main Phanerozoic marine radiation sparked by emerging Mid Ordovician icehouse.

Rasmussen CM, Ullmann CV, Jakobsen KG, Lindskog A, Hansen J, Hansen T, Eriksson ME, Dronov A, Frei R, Korte C, Nielsen AT, Harper DA.

Sci Rep. 2016 Jan 6;6:18884. doi: 10.1038/srep18884.

31.

Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli.

Rau MH, Bojanovič K, Nielsen AT, Long KS.

BMC Genomics. 2015 Dec 10;16:1051. doi: 10.1186/s12864-015-2231-8.

32.

Seven gene deletions in seven days: Fast generation of Escherichia coli strains tolerant to acetate and osmotic stress.

Jensen SI, Lennen RM, Herrgård MJ, Nielsen AT.

Sci Rep. 2015 Dec 8;5:17874. doi: 10.1038/srep17874.

33.

Engineering of high yield production of L-serine in Escherichia coli.

Mundhada H, Schneider K, Christensen HB, Nielsen AT.

Biotechnol Bioeng. 2016 Apr;113(4):807-16. doi: 10.1002/bit.25844. Epub 2015 Oct 7.

PMID:
26416585
34.

Editorial overview: Chemical biotechnology: Interdisciplinary concepts for modern biotechnological production of biochemicals and biofuels.

Bornscheuer UT, Nielsen AT.

Curr Opin Biotechnol. 2015 Dec;35:133-4. doi: 10.1016/j.copbio.2015.07.002. Epub 2015 Jul 25. No abstract available.

PMID:
26218709
35.

Substrate and Inhibitor-Specific Conformational Changes in the Human Serotonin Transporter Revealed by Voltage-Clamp Fluorometry.

Söderhielm PC, Andersen J, Munro L, Nielsen AT, Kristensen AS.

Mol Pharmacol. 2015 Oct;88(4):676-88. doi: 10.1124/mol.115.099911. Epub 2015 Jul 14.

PMID:
26174773
36.

CrEdit: CRISPR mediated multi-loci gene integration in Saccharomyces cerevisiae.

Ronda C, Maury J, Jakočiunas T, Jacobsen SA, Germann SM, Harrison SJ, Borodina I, Keasling JD, Jensen MK, Nielsen AT.

Microb Cell Fact. 2015 Jul 7;14:97. doi: 10.1186/s12934-015-0288-3.

37.

Highly Active and Specific Tyrosine Ammonia-Lyases from Diverse Origins Enable Enhanced Production of Aromatic Compounds in Bacteria and Saccharomyces cerevisiae.

Jendresen CB, Stahlhut SG, Li M, Gaspar P, Siedler S, Förster J, Maury J, Borodina I, Nielsen AT.

Appl Environ Microbiol. 2015 Jul;81(13):4458-76. doi: 10.1128/AEM.00405-15. Epub 2015 Apr 24.

38.

CasEMBLR: Cas9-Facilitated Multiloci Genomic Integration of in Vivo Assembled DNA Parts in Saccharomyces cerevisiae.

Jakočiūnas T, Rajkumar AS, Zhang J, Arsovska D, Rodriguez A, Jendresen CB, Skjødt ML, Nielsen AT, Borodina I, Jensen MK, Keasling JD.

ACS Synth Biol. 2015 Nov 20;4(11):1226-34. doi: 10.1021/acssynbio.5b00007. Epub 2015 Mar 26.

PMID:
25781611
39.

Trash to treasure: production of biofuels and commodity chemicals via syngas fermenting microorganisms.

Latif H, Zeidan AA, Nielsen AT, Zengler K.

Curr Opin Biotechnol. 2014 Jun;27:79-87. doi: 10.1016/j.copbio.2013.12.001. Epub 2013 Dec 28. Review.

PMID:
24863900
40.

Accelerating genome editing in CHO cells using CRISPR Cas9 and CRISPy, a web-based target finding tool.

Ronda C, Pedersen LE, Hansen HG, Kallehauge TB, Betenbaugh MJ, Nielsen AT, Kildegaard HF.

Biotechnol Bioeng. 2014 Aug;111(8):1604-16. doi: 10.1002/bit.25233. Epub 2014 May 22.

41.

Comparative study on aptamers as recognition elements for antibiotics in a label-free all-polymer biosensor.

Daprà J, Lauridsen LH, Nielsen AT, Rozlosnik N.

Biosens Bioelectron. 2013 May 15;43:315-20. doi: 10.1016/j.bios.2012.12.058. Epub 2013 Jan 7.

PMID:
23353009
42.

Characterization of a feedback-resistant mevalonate kinase from the archaeon Methanosarcina mazei.

Primak YA, Du M, Miller MC, Wells DH, Nielsen AT, Weyler W, Beck ZQ.

Appl Environ Microbiol. 2011 Nov;77(21):7772-8. doi: 10.1128/AEM.05761-11. Epub 2011 Sep 9.

43.

Devonian rise in atmospheric oxygen correlated to the radiations of terrestrial plants and large predatory fish.

Dahl TW, Hammarlund EU, Anbar AD, Bond DP, Gill BC, Gordon GW, Knoll AH, Nielsen AT, Schovsbo NH, Canfield DE.

Proc Natl Acad Sci U S A. 2010 Oct 19;107(42):17911-5. doi: 10.1073/pnas.1011287107. Epub 2010 Sep 30.

44.

A bistable switch and anatomical site control Vibrio cholerae virulence gene expression in the intestine.

Nielsen AT, Dolganov NA, Rasmussen T, Otto G, Miller MC, Felt SA, Torreilles S, Schoolnik GK.

PLoS Pathog. 2010 Sep 16;6(9):e1001102. doi: 10.1371/journal.ppat.1001102.

45.

vpsA- and luxO-independent biofilms of Vibrio cholerae.

Müller J, Miller MC, Nielsen AT, Schoolnik GK, Spormann AM.

FEMS Microbiol Lett. 2007 Oct;275(2):199-206. Epub 2007 Aug 14.

46.

RpoS controls the Vibrio cholerae mucosal escape response.

Nielsen AT, Dolganov NA, Otto G, Miller MC, Wu CY, Schoolnik GK.

PLoS Pathog. 2006 Oct;2(10):e109.

47.

The Vibrio cholerae chitin utilization program.

Meibom KL, Li XB, Nielsen AT, Wu CY, Roseman S, Schoolnik GK.

Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2524-9.

48.

Single nucleotide polymorphism genotyping using locked nucleic acid (LNA).

Mouritzen P, Nielsen AT, Pfundheller HM, Choleva Y, Kongsbak L, Møller S.

Expert Rev Mol Diagn. 2003 Jan;3(1):27-38. Review.

PMID:
12528362
49.
50.

Quantification of volatile sulfur compounds in complex gaseous matrices by solid-phase microextraction.

Nielsen AT, Jonsson S.

J Chromatogr A. 2002 Jul 19;963(1-2):57-64.

PMID:
12188001

Supplemental Content

Loading ...
Support Center