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Items: 1 to 50 of 187

1.

Mass spectrometry imaging reveals lipid upregulation and bile acid changes indicating amitriptyline induced steatosis in a rat model.

Kampa JM, Sahin M, Slopianka M, Giampà M, Bednarz H, Ernst R, Riefke B, Niehaus K, Fatangare A.

Toxicol Lett. 2020 Jun 1;325:43-50. doi: 10.1016/j.toxlet.2020.02.007. Epub 2020 Feb 21.

PMID:
32092452
2.

Immersion by rotation-based application of the matrix for fast and reproducible sample preparations and robust results in mass spectrometry imaging.

Schäfermann J, Kliewer G, Lösch J, Bednarz H, Giampà M, Niehaus K.

J Mass Spectrom. 2020 Mar;55(3):e4488. doi: 10.1002/jms.4488. Epub 2020 Jan 21.

PMID:
31826308
3.

Giant retroperitoneal liposarcoma: A case report and literature review.

Herzberg J, Niehaus K, Holl-Ulrich K, Honarpisheh H, Guraya SY, Strate T.

J Taibah Univ Med Sci. 2019 Oct 11;14(5):466-471. doi: 10.1016/j.jtumed.2019.08.005. eCollection 2019 Oct.

4.

Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA.

Wan N, Weinberg D, Liu TY, Niehaus K, Ariazi EA, Delubac D, Kannan A, White B, Bailey M, Bertin M, Boley N, Bowen D, Cregg J, Drake AM, Ennis R, Fransen S, Gafni E, Hansen L, Liu Y, Otte GL, Pecson J, Rice B, Sanderson GE, Sharma A, St John J, Tang C, Tzou A, Young L, Putcha G, Haque IS.

BMC Cancer. 2019 Aug 23;19(1):832. doi: 10.1186/s12885-019-6003-8.

5.

Mass Spectrometry Imaging of the Spatial and Temporal Localization of Alkaloids in Nightshades.

Bednarz H, Roloff N, Niehaus K.

J Agric Food Chem. 2019 Dec 11;67(49):13470-13477. doi: 10.1021/acs.jafc.9b01155. Epub 2019 Jul 23.

PMID:
31334645
6.

Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies.

Seeger B, Mentz A, Knebel C, Schmidt F, Bednarz H, Niehaus K, Albaum S, Kalinowski J, Noll T, Steinberg P, Marx-Stoelting P, Heise T.

Arch Toxicol. 2019 Aug;93(8):2321-2333. doi: 10.1007/s00204-019-02502-w. Epub 2019 Jun 28.

PMID:
31254001
7.

Detection and visualization of communities in mass spectrometry imaging data.

Wüllems K, Kölling J, Bednarz H, Niehaus K, Hans VH, Nattkemper TW.

BMC Bioinformatics. 2019 Jun 4;20(1):303. doi: 10.1186/s12859-019-2890-6.

8.

A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani.

Verwaaijen B, Wibberg D, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A.

Sci Rep. 2019 May 10;9(1):7221. doi: 10.1038/s41598-019-43706-5.

9.

Regulatory associations between the metabolism of sulfur-containing amino acids and xanthan biosynthesis in Xanthomonas campestris pv. campestris B100.

Schulte F, Leßmeier L, Voss J, Ortseifen V, Vorhölter FJ, Niehaus K.

FEMS Microbiol Lett. 2019 Jan 1;366(2). doi: 10.1093/femsle/fnz005.

PMID:
30649298
10.

An integrated approach to study novel properties of a MALDI matrix (4-maleicanhydridoproton sponge) for MS imaging analyses.

Corinti D, Crestoni ME, Fornarini S, Pieper M, Niehaus K, Giampà M.

Anal Bioanal Chem. 2019 Feb;411(4):953-964. doi: 10.1007/s00216-018-1531-7. Epub 2018 Dec 18.

PMID:
30565172
11.

Conjugated Polymers as a New Class of Dual-Mode Matrices for MALDI Mass Spectrometry and Imaging.

Horatz K, Giampà M, Karpov Y, Sahre K, Bednarz H, Kiriy A, Voit B, Niehaus K, Hadjichristidis N, Michels DL, Lissel F.

J Am Chem Soc. 2018 Sep 12;140(36):11416-11423. doi: 10.1021/jacs.8b06637. Epub 2018 Aug 28.

PMID:
30089208
12.

Metabolic survey of Botryococcus braunii: Impact of the physiological state on product formation.

Blifernez-Klassen O, Chaudhari S, Klassen V, Wördenweber R, Steffens T, Cholewa D, Niehaus K, Kalinowski J, Kruse O.

PLoS One. 2018 Jun 7;13(6):e0198976. doi: 10.1371/journal.pone.0198976. eCollection 2018.

13.

Perfect merohedral twinning combined with noncrystallographic symmetry potentially causes the failure of molecular replacement with low-homology search models for the flavin-dependent halogenase HalX from Xanthomonas campestris.

Buss M, Geerds C, Patschkowski T, Niehaus K, Niemann HH.

Acta Crystallogr F Struct Biol Commun. 2018 Jun 1;74(Pt 6):345-350. doi: 10.1107/S2053230X18006933. Epub 2018 May 18.

PMID:
29870018
14.

Comparative transcription profiling of two fermentation cultures of Xanthomonas campestris pv. campestris B100 sampled in the growth and in the stationary phase.

Alkhateeb RS, Vorhölter FJ, Steffens T, Rückert C, Ortseifen V, Hublik G, Niehaus K, Pühler A.

Appl Microbiol Biotechnol. 2018 Aug;102(15):6613-6625. doi: 10.1007/s00253-018-9106-2. Epub 2018 Jun 1.

PMID:
29858955
15.

You don't need to talk to throw a ball! Children's inclusion of language-outgroup members in behavioral and hypothetical scenarios.

Mulvey KL, Boswell C, Niehaus K.

Dev Psychol. 2018 Jul;54(7):1372-1380. doi: 10.1037/dev0000531. Epub 2018 Mar 29.

PMID:
29595313
16.

Protection of Pepper Plants from Drought by Microbacterium sp. 3J1 by Modulation of the Plant's Glutamine and α-ketoglutarate Content: A Comparative Metabolomics Approach.

Vílchez JI, Niehaus K, Dowling DN, González-López J, Manzanera M.

Front Microbiol. 2018 Feb 22;9:284. doi: 10.3389/fmicb.2018.00284. eCollection 2018.

17.

Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data.

Yang Y, Niehaus KE, Walker TM, Iqbal Z, Walker AS, Wilson DJ, Peto TEA, Crook DW, Smith EG, Zhu T, Clifton DA.

Bioinformatics. 2018 May 15;34(10):1666-1671. doi: 10.1093/bioinformatics/btx801.

18.

The Plant Immunity Regulating F-Box Protein CPR1 Supports Plastid Function in Absence of Pathogens.

Hedtmann C, Guo W, Reifschneider E, Heiber I, Hiltscher H, van Buer J, Barsch A, Niehaus K, Rowan B, Lortzing T, Steppuhn A, Baier M.

Front Plant Sci. 2017 Sep 22;8:1650. doi: 10.3389/fpls.2017.01650. eCollection 2017.

19.

Micro-organisms growing on rapeseed during storage affect the profile of volatile compounds of virgin rapeseed oil.

Wagner C, Bonte A, Brühl L, Niehaus K, Bednarz H, Matthäus B.

J Sci Food Agric. 2018 Apr;98(6):2147-2155. doi: 10.1002/jsfa.8699. Epub 2017 Nov 1.

PMID:
28960362
20.

Systems and synthetic biology perspective of the versatile plant-pathogenic and polysaccharide-producing bacterium Xanthomonas campestris.

Schatschneider S, Schneider J, Blom J, Létisse F, Niehaus K, Goesmann A, Vorhölter FJ.

Microbiology. 2017 Aug;163(8):1117-1144. doi: 10.1099/mic.0.000473. Epub 2017 Aug 10. Review.

PMID:
28795660
21.

Using a Patient and Family Advisory Council as a Mechanism to Hear the Patient's Voice.

Niehaus K.

J Oncol Pract. 2017 Aug;13(8):509-511. doi: 10.1200/JOP.2017.024240. Epub 2017 Jul 13. No abstract available.

PMID:
28704122
22.

Physiological roles of sigma factor SigD in Corynebacterium glutamicum.

Taniguchi H, Busche T, Patschkowski T, Niehaus K, Pátek M, Kalinowski J, Wendisch VF.

BMC Microbiol. 2017 Jul 12;17(1):158. doi: 10.1186/s12866-017-1067-6.

23.

Heterogeneous oxygen availability affects the titer and topology but not the fidelity of plasmid DNA produced by Escherichia coli.

Jaén KE, Sigala JC, Olivares-Hernández R, Niehaus K, Lara AR.

BMC Biotechnol. 2017 Jul 4;17(1):60. doi: 10.1186/s12896-017-0378-x.

24.

A robust protocol for the isolation of cellular proteins from Xanthomonas campestris to analyze the methionine effect in 2D-gel experiments.

Schulte F, Hardt M, Niehaus K.

Electrophoresis. 2017 Oct;38(20):2603-2609. doi: 10.1002/elps.201700064. Epub 2017 Aug 25.

PMID:
28605028
25.

Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.

Alkhateeb RS, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter FJ.

J Biotechnol. 2017 Jul 10;253:55-61. doi: 10.1016/j.jbiotec.2017.05.009. Epub 2017 May 12.

PMID:
28506932
26.

The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.).

Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A.

PLoS One. 2017 May 9;12(5):e0177278. doi: 10.1371/journal.pone.0177278. eCollection 2017.

27.

Mixture effects of azole fungicides on the adrenal gland in a broad dose range.

Rieke S, Heise T, Schmidt F, Haider W, Bednarz H, Niehaus K, Mentz A, Kalinowski J, Hirsch-Ernst KI, Steinberg P, Niemann L, Marx-Stoelting P.

Toxicology. 2017 Jun 15;385:28-37. doi: 10.1016/j.tox.2017.04.012. Epub 2017 Apr 25.

PMID:
28454766
28.

The "Nouvelle Vague" of surgeons in pancreatic surgery: can they rise to the legacy of current surgeons?

Papalampros A, Moris D, Fard-Aghaie M, Stavrou GA, Felekouras E, Niehaus K, Oldhafer K.

J BUON. 2017 Jan-Feb;22(1):239-243.

29.

Co-encapsulation of amyloglucosidase with starch and Saccharomyces cerevisiae as basis for a long-lasting CO2 release.

Humbert P, Vemmer M, Giampà M, Bednarz H, Niehaus K, Patel AV.

World J Microbiol Biotechnol. 2017 Apr;33(4):71. doi: 10.1007/s11274-017-2237-2. Epub 2017 Mar 13.

PMID:
28289929
30.

The lipopolysaccharide of the crop pathogen Xanthomonas translucens pv. translucens: chemical characterization and determination of signaling events in plant cells.

Steffens T, Duda K, Lindner B, Vorhölter FJ, Bednarz H, Niehaus K, Holst O.

Glycobiology. 2017 Mar 15;27(3):264-274. doi: 10.1093/glycob/cww093.

PMID:
28177490
31.

Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T.

Torres Tejerizo G, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M.

Genome Announc. 2017 Jan 26;5(4). pii: e01513-16. doi: 10.1128/genomeA.01513-16.

32.

Successful diagnosis of lymphangioleiomyomatosis with transbronchial lung cryobiopsy.

Gupta N, Wikenheiser-Brokamp K, Zander D, Balestra R, Selvaraju A, Niehaus K, Benzaquen S.

Lymphology. 2017;50(3):154-157.

PMID:
30234253
33.

Using transposition to introduce eGFP fusions in Sinorhizobium meliloti: A tool to analyze protein localization patterns in bacteria.

Bednarz H, Niehaus K.

J Biotechnol. 2017 Sep 10;257:139-149. doi: 10.1016/j.jbiotec.2016.12.013. Epub 2016 Dec 19.

PMID:
28007516
34.

Comparative analysis of different xanthan samples by atomic force microscopy.

Teckentrup J, Al-Hammood O, Steffens T, Bednarz H, Walhorn V, Niehaus K, Anselmetti D.

J Biotechnol. 2017 Sep 10;257:2-8. doi: 10.1016/j.jbiotec.2016.11.032. Epub 2016 Dec 2.

PMID:
27919690
35.

Machine Learning and Decision Support in Critical Care.

Johnson AE, Ghassemi MM, Nemati S, Niehaus KE, Clifton DA, Clifford GD.

Proc IEEE Inst Electr Electron Eng. 2016 Feb;104(2):444-466. Epub 2016 Jan 25.

36.

Educational and Psychosocial Support Needs in Lynch Syndrome: Implementation and Assessment of an Educational Workshop and Support Group.

Corines MJ, Hamilton JG, Glogowski E, Anrig CA, Goldberg R, Niehaus K, Salo-Mullen E, Harlan M, Sheehan MR, Trottier M, Ahsraf A, Tran C, Jacobs L, Rau-Murthy R, Lincoln AG, Robson ME, Guillem JG, Markowitz AJ, Offit K, Stadler ZK.

J Genet Couns. 2017 Apr;26(2):232-243. doi: 10.1007/s10897-016-0015-1. Epub 2016 Oct 12.

37.

Proteome-Based Analysis of Colloidal Instability Enables the Detection of Haze-Active Proteins in Beer.

Schulte F, Flaschel E, Niehaus K.

J Agric Food Chem. 2016 Sep 7;64(35):6752-61. doi: 10.1021/acs.jafc.6b02467. Epub 2016 Aug 25.

PMID:
27515584
38.

Rhizobium favelukesii sp. nov., isolated from the root nodules of alfalfa (Medicago sativa L).

Torres Tejerizo G, Rogel MA, Ormeño-Orrillo E, Althabegoiti MJ, Nilsson JF, Niehaus K, Schlüter A, Pühler A, Del Papa MF, Lagares A, Martínez-Romero E, Pistorio M.

Int J Syst Evol Microbiol. 2016 Nov;66(11):4451-4457. doi: 10.1099/ijsem.0.001373. Epub 2016 Aug 3.

PMID:
27499008
39.

Maleic anhydride proton sponge as a novel MALDI matrix for the visualization of small molecules (<250 m/z) in brain tumors by routine MALDI ToF imaging mass spectrometry.

Giampà M, Lissel MB, Patschkowski T, Fuchser J, Hans VH, Gembruch O, Bednarz H, Niehaus K.

Chem Commun (Camb). 2016 Aug 14;52(63):9801-4. doi: 10.1039/c6cc02387h. Epub 2016 Jul 15.

PMID:
27419250
40.

A consolidated analysis of the physiologic and molecular responses induced under acid stress in the legume-symbiont model-soil bacterium Sinorhizobium meliloti.

Draghi WO, Del Papa MF, Hellweg C, Watt SA, Watt TF, Barsch A, Lozano MJ, Lagares A Jr, Salas ME, López JL, Albicoro FJ, Nilsson JF, Torres Tejerizo GA, Luna MF, Pistorio M, Boiardi JL, Pühler A, Weidner S, Niehaus K, Lagares A.

Sci Rep. 2016 Jul 11;6:29278. doi: 10.1038/srep29278.

41.

A safe and feasible "clock-face" duct-to-mucosa pancreaticojejunostomy with a very low incidence of anastomotic failure: A single center experience of 248 patients.

Papalampros A, Niehaus K, Moris D, Fard-Aghaie M, Stavrou G, Margonis AG, Angelou A, Oldhafer K.

J Visc Surg. 2016 Dec;153(6):425-431. doi: 10.1016/j.jviscsurg.2016.05.004. Epub 2016 May 30.

PMID:
27256902
42.

The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100.

Steffens T, Vorhölter FJ, Giampà M, Hublik G, Pühler A, Niehaus K.

BMC Microbiol. 2016 May 23;16:93. doi: 10.1186/s12866-016-0710-y.

43.

Genetic engineering in Actinoplanes sp. SE50/110 - development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors.

Gren T, Ortseifen V, Wibberg D, Schneiker-Bekel S, Bednarz H, Niehaus K, Zemke T, Persicke M, Pühler A, Kalinowski J.

J Biotechnol. 2016 Aug 20;232:79-88. doi: 10.1016/j.jbiotec.2016.05.012. Epub 2016 May 12.

PMID:
27181842
44.

Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris.

Leßmeier L, Alkhateeb RS, Schulte F, Steffens T, Loka TP, Pühler A, Niehaus K, Vorhölter FJ.

J Biotechnol. 2016 Aug 20;232:89-98. doi: 10.1016/j.jbiotec.2016.04.007. Epub 2016 Apr 7.

PMID:
27060555
45.

Genome wide transcription start sites analysis of Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan.

Alkhateeb RS, Vorhölter FJ, Rückert C, Mentz A, Wibberg D, Hublik G, Niehaus K, Pühler A.

J Biotechnol. 2016 May 10;225:18-28. doi: 10.1016/j.jbiotec.2016.03.020. Epub 2016 Mar 11.

PMID:
26975844
46.

Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging.

Gorzolka K, Kölling J, Nattkemper TW, Niehaus K.

PLoS One. 2016 Mar 3;11(3):e0150208. doi: 10.1371/journal.pone.0150208. eCollection 2016.

47.

Phenotypic characterisation of Crohn's disease severity.

Niehaus KE, Uhlig HH, Clifton DA.

Conf Proc IEEE Eng Med Biol Soc. 2015 Aug;2015:7023-6. doi: 10.1109/EMBC.2015.7320009.

PMID:
26737909
48.

Balance Between Technical Novelty and Clinical Fidelity Is the Cornerstone in Pancreatic Surgery.

Papalampros A, Moris D, Felekouras E, Niehaus K, Oldhafer K.

J Am Coll Surg. 2016 Jan;222(1):99. doi: 10.1016/j.jamcollsurg.2015.09.007. No abstract available.

PMID:
26721753
49.

Metabolic Adaptations of White Lupin Roots and Shoots under Phosphorus Deficiency.

Müller J, Gödde V, Niehaus K, Zörb C.

Front Plant Sci. 2015 Nov 24;6:1014. doi: 10.3389/fpls.2015.01014. eCollection 2015.

50.

ColE1-Plasmid Production in Escherichia coli: Mathematical Simulation and Experimental Validation.

Freudenau I, Lutter P, Baier R, Schleef M, Bednarz H, Lara AR, Niehaus K.

Front Bioeng Biotechnol. 2015 Sep 1;3:127. doi: 10.3389/fbioe.2015.00127. eCollection 2015.

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