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Items: 1 to 50 of 85

1.

Excitation Energy Transfer in Intact CpcL-Phycobilisomes from Synechocystis sp. PCC 6803.

Niedzwiedzki DM, Liu H, Blankenship RE.

J Phys Chem B. 2019 Jun 6;123(22):4695-4704. doi: 10.1021/acs.jpcb.9b02696. Epub 2019 May 28.

PMID:
31042029
2.

Mapping the excitation energy migration pathways in phycobilisomes from the cyanobacterium Acaryochloris marina.

Niedzwiedzki DM, Bar-Zvi S, Blankenship RE, Adir N.

Biochim Biophys Acta Bioenerg. 2019 Apr 1;1860(4):286-296. doi: 10.1016/j.bbabio.2019.01.002. Epub 2019 Jan 28.

PMID:
30703363
3.

Excitation energy transfer in the far-red absorbing violaxanthin/vaucheriaxanthin chlorophyll a complex from the eustigmatophyte alga FP5.

Niedzwiedzki DM, Wolf BM, Blankenship RE.

Photosynth Res. 2019 Jun;140(3):337-354. doi: 10.1007/s11120-019-00615-y. Epub 2019 Jan 30.

PMID:
30701484
4.

Engineering of B800 bacteriochlorophyll binding site specificity in the Rhodobacter sphaeroides LH2 antenna.

Swainsbury DJK, Faries KM, Niedzwiedzki DM, Martin EC, Flinders AJ, Canniffe DP, Shen G, Bryant DA, Kirmaier C, Holten D, Hunter CN.

Biochim Biophys Acta Bioenerg. 2019 Mar 1;1860(3):209-223. doi: 10.1016/j.bbabio.2018.11.008. Epub 2018 Nov 9.

5.

Origin of Panchromaticity in Multichromophore-Tetrapyrrole Arrays.

Yuen JM, Diers JR, Alexy EJ, Roy A, Mandal AK, Kang HS, Niedzwiedzki DM, Kirmaier C, Lindsey JS, Bocian DF, Holten D.

J Phys Chem A. 2018 Sep 13;122(36):7181-7201. doi: 10.1021/acs.jpca.8b06815. Epub 2018 Aug 28.

PMID:
30152691
6.

Excitation energy transfer kinetics and efficiency in phototrophic green sulfur bacteria.

Magdaong NCM, Niedzwiedzki DM, Saer RG, Goodson C, Blankenship RE.

Biochim Biophys Acta Bioenerg. 2018 Jul 31. pii: S0005-2728(18)30234-2. doi: 10.1016/j.bbabio.2018.07.012. [Epub ahead of print]

PMID:
30075116
7.

Excited-state properties of the central-cis isomer of the carotenoid peridinin.

Niedzwiedzki DM, Blankenship RE.

Arch Biochem Biophys. 2018 Jul 1;649:29-36. doi: 10.1016/j.abb.2018.05.004. Epub 2018 May 6.

PMID:
29742456
8.

Energy transfer in purple bacterial photosynthetic units from cells grown in various light intensities.

Niedzwiedzki DM, Gardiner AT, Blankenship RE, Cogdell RJ.

Photosynth Res. 2018 Sep;137(3):389-402. doi: 10.1007/s11120-018-0512-1. Epub 2018 May 3.

PMID:
29725994
9.

Structural heterogeneity leads to functional homogeneity in A. marina phycocyanin.

Bar-Zvi S, Lahav A, Harris D, Niedzwiedzki DM, Blankenship RE, Adir N.

Biochim Biophys Acta Bioenerg. 2018 Jul;1859(7):544-553. doi: 10.1016/j.bbabio.2018.04.007. Epub 2018 Apr 25.

PMID:
29704497
10.

Adaptation of Rhodopseudomonas acidophila strain 7050 to growth at different light intensities: what are the benefits to changing the type of LH2?

Gardiner AT, Niedzwiedzki DM, Cogdell RJ.

Faraday Discuss. 2018 Apr 1;207:471-489. doi: 10.1039/c7fd00191f. Epub 2018 Jan 22.

PMID:
29355274
11.

Repurposing a photosynthetic antenna protein as a super-resolution microscopy label.

Barnett SFH, Hitchcock A, Mandal AK, Vasilev C, Yuen JM, Morby J, Brindley AA, Niedzwiedzki DM, Bryant DA, Cadby AJ, Holten D, Hunter CN.

Sci Rep. 2017 Dec 1;7(1):16807. doi: 10.1038/s41598-017-16834-z.

12.

Tailoring Panchromatic Absorption and Excited-State Dynamics of Tetrapyrrole-Chromophore (Bodipy, Rylene) Arrays-Interplay of Orbital Mixing and Configuration Interaction.

Mandal AK, Diers JR, Niedzwiedzki DM, Hu G, Liu R, Alexy EJ, Lindsey JS, Bocian DF, Holten D.

J Am Chem Soc. 2017 Dec 6;139(48):17547-17564. doi: 10.1021/jacs.7b09548. Epub 2017 Nov 21.

PMID:
29160700
13.

Origin of the S* Excited State Feature of Carotenoids in Light-Harvesting Complex 1 from Purple Photosynthetic Bacteria.

Niedzwiedzki DM, Swainsbury DJK, Martin EC, Hunter CN, Blankenship RE.

J Phys Chem B. 2017 Aug 17;121(32):7571-7585. doi: 10.1021/acs.jpcb.7b04251. Epub 2017 Aug 4.

PMID:
28719215
14.

Polymer-Chlorosome Nanocomposites Consisting of Non-Native Combinations of Self-Assembling Bacteriochlorophylls.

Orf GS, Collins AM, Niedzwiedzki DM, Tank M, Thiel V, Kell A, Bryant DA, Montaño GA, Blankenship RE.

Langmuir. 2017 Jun 27;33(25):6427-6438. doi: 10.1021/acs.langmuir.7b01761. Epub 2017 Jun 15.

PMID:
28585832
15.

Characterization of a newly isolated freshwater Eustigmatophyte alga capable of utilizing far-red light as its sole light source.

Wolf BM, Niedzwiedzki DM, Magdaong NCM, Roth R, Goodenough U, Blankenship RE.

Photosynth Res. 2018 Mar;135(1-3):177-189. doi: 10.1007/s11120-017-0401-z. Epub 2017 May 25.

PMID:
28547584
16.

Photophysical Characterization of the Naturally Occurring Dioxobacteriochlorin Tolyporphin A and Synthetic Oxobacteriochlorin Analogues.

Hood D, Niedzwiedzki DM, Zhang R, Zhang Y, Dai J, Miller ES, Bocian DF, Williams PG, Lindsey JS, Holten D.

Photochem Photobiol. 2017 Oct;93(5):1204-1215. doi: 10.1111/php.12781. Epub 2017 Jul 25.

PMID:
28439932
17.

Ultrafast Spectroscopic Investigation of Energy Transfer in Site-Directed Mutants of the Fenna-Matthews-Olson (FMO) Antenna Complex from Chlorobaculum tepidum.

Magdaong NCM, Saer RG, Niedzwiedzki DM, Blankenship RE.

J Phys Chem B. 2017 May 11;121(18):4700-4712. doi: 10.1021/acs.jpcb.7b01270. Epub 2017 Apr 28.

PMID:
28422512
18.

Reevaluating the mechanism of excitation energy regulation in iron-starved cyanobacteria.

Chen HS, Liberton M, Pakrasi HB, Niedzwiedzki DM.

Biochim Biophys Acta Bioenerg. 2017 Mar;1858(3):249-258. doi: 10.1016/j.bbabio.2017.01.001. Epub 2017 Jan 8.

19.

Augmenting light coverage for photosynthesis through YFP-enhanced charge separation at the Rhodobacter sphaeroides reaction centre.

Grayson KJ, Faries KM, Huang X, Qian P, Dilbeck P, Martin EC, Hitchcock A, Vasilev C, Yuen JM, Niedzwiedzki DM, Leggett GJ, Holten D, Kirmaier C, Neil Hunter C.

Nat Commun. 2017 Jan 5;8:13972. doi: 10.1038/ncomms13972.

20.

Photophysical Properties and Electronic Structure of Porphyrins Bearing Zero to Four meso-Phenyl Substituents: New Insights into Seemingly Well Understood Tetrapyrroles.

Mandal AK, Taniguchi M, Diers JR, Niedzwiedzki DM, Kirmaier C, Lindsey JS, Bocian DF, Holten D.

J Phys Chem A. 2016 Dec 15;120(49):9719-9731. Epub 2016 Dec 6.

PMID:
27973797
21.

New insights into the photochemistry of carotenoid spheroidenone in light-harvesting complex 2 from the purple bacterium Rhodobacter sphaeroides.

Niedzwiedzki DM, Dilbeck PL, Tang Q, Martin EC, Bocian DF, Hunter CN, Holten D.

Photosynth Res. 2017 Mar;131(3):291-304. doi: 10.1007/s11120-016-0322-2. Epub 2016 Nov 16.

22.
23.

Fast Photochemical Oxidation of Proteins Maps the Topology of Intrinsic Membrane Proteins: Light-Harvesting Complex 2 in a Nanodisc.

Lu Y, Zhang H, Niedzwiedzki DM, Jiang J, Blankenship RE, Gross ML.

Anal Chem. 2016 Sep 6;88(17):8827-34. doi: 10.1021/acs.analchem.6b01945. Epub 2016 Aug 16.

24.

Evidence for a cysteine-mediated mechanism of excitation energy regulation in a photosynthetic antenna complex.

Orf GS, Saer RG, Niedzwiedzki DM, Zhang H, McIntosh CL, Schultz JW, Mirica LM, Blankenship RE.

Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):E4486-93. doi: 10.1073/pnas.1603330113. Epub 2016 Jun 22.

25.

Quenching Capabilities of Long-Chain Carotenoids in Light-Harvesting-2 Complexes from Rhodobacter sphaeroides with an Engineered Carotenoid Synthesis Pathway.

Dilbeck PL, Tang Q, Mothersole DJ, Martin EC, Hunter CN, Bocian DF, Holten D, Niedzwiedzki DM.

J Phys Chem B. 2016 Jun 23;120(24):5429-43. doi: 10.1021/acs.jpcb.6b03305. Epub 2016 Jun 10.

26.

Carotenoid-to-Bacteriochlorophyll Energy Transfer in the LH1-RC Core Complex of a Bacteriochlorophyll b Containing Purple Photosynthetic Bacterium Blastochloris viridis.

Magdaong NC, Niedzwiedzki DM, Goodson C, Blankenship RE.

J Phys Chem B. 2016 Jun 16;120(23):5159-71. doi: 10.1021/acs.jpcb.6b04307. Epub 2016 Jun 6.

PMID:
27218197
27.

Carotenoid-induced non-photochemical quenching in the cyanobacterial chlorophyll synthase-HliC/D complex.

Niedzwiedzki DM, Tronina T, Liu H, Staleva H, Komenda J, Sobotka R, Blankenship RE, Polívka T.

Biochim Biophys Acta. 2016 Sep;1857(9):1430-1439. doi: 10.1016/j.bbabio.2016.04.280. Epub 2016 Apr 28.

28.

Spectroscopic Investigation of the Carotenoid Deoxyperidinin: Direct Observation of the Forbidden S0 → S1 Transition.

Greco JA, LaFountain AM, Kinashi N, Shinada T, Sakaguchi K, Katsumura S, Magdaong NC, Niedzwiedzki DM, Birge RR, Frank HA.

J Phys Chem B. 2016 Mar 17;120(10):2731-44. doi: 10.1021/acs.jpcb.6b00439. Epub 2016 Mar 4.

PMID:
26907520
29.

Effects of Strong Electronic Coupling in Chlorin and Bacteriochlorin Dyads.

Kang HS, Esemoto NN, Diers JR, Niedzwiedzki DM, Greco JA, Akhigbe J, Yu Z, Pancholi C, Bhagavathy GV, Nguyen JK, Kirmaier C, Birge RR, Ptaszek M, Holten D, Bocian DF.

J Phys Chem A. 2016 Jan 28;120(3):379-95. doi: 10.1021/acs.jpca.5b10686. Epub 2016 Jan 14.

PMID:
26765839
30.

Self-Assembled Light-Harvesting System from Chromophores in Lipid Vesicles.

Sahin T, Harris MA, Vairaprakash P, Niedzwiedzki DM, Subramanian V, Shreve AP, Bocian DF, Holten D, Lindsey JS.

J Phys Chem B. 2015 Aug 13;119(32):10231-43. doi: 10.1021/acs.jpcb.5b04841. Epub 2015 Jul 31.

PMID:
26230425
31.

Dynamics of Energy and Electron Transfer in the FMO-Reaction Center Core Complex from the Phototrophic Green Sulfur Bacterium Chlorobaculum tepidum.

He G, Niedzwiedzki DM, Orf GS, Zhang H, Blankenship RE.

J Phys Chem B. 2015 Jul 2;119(26):8321-9. doi: 10.1021/acs.jpcb.5b04170. Epub 2015 Jun 22.

PMID:
26061391
32.

Spectral heterogeneity and carotenoid-to-bacteriochlorophyll energy transfer in LH2 light-harvesting complexes from Allochromatium vinosum.

Magdaong NM, LaFountain AM, Hacking K, Niedzwiedzki DM, Gibson GN, Cogdell RJ, Frank HA.

Photosynth Res. 2016 Feb;127(2):171-87. doi: 10.1007/s11120-015-0165-2. Epub 2015 Jun 6.

PMID:
26048106
33.

Excited state lifetimes and energies of okenone and chlorobactene, exemplary keto and non-keto aryl carotenoids.

Niedzwiedzki DM, Cranston L.

Phys Chem Chem Phys. 2015 May 28;17(20):13245-56. doi: 10.1039/c5cp00836k.

PMID:
25920497
34.

Functional characteristics of spirilloxanthin and keto-bearing Analogues in light-harvesting LH2 complexes from Rhodobacter sphaeroides with a genetically modified carotenoid synthesis pathway.

Niedzwiedzki DM, Dilbeck PL, Tang Q, Mothersole DJ, Martin EC, Bocian DF, Holten D, Hunter CN.

Biochim Biophys Acta. 2015 Jun-Jul;1847(6-7):640-55. doi: 10.1016/j.bbabio.2015.04.001. Epub 2015 Apr 11.

35.

Extending the short and long wavelength limits of bacteriochlorin near-infrared absorption via dioxo- and bisimide-functionalization.

Vairaprakash P, Yang E, Sahin T, Taniguchi M, Krayer M, Diers JR, Wang A, Niedzwiedzki DM, Kirmaier C, Lindsey JS, Bocian DF, Holten D.

J Phys Chem B. 2015 Mar 26;119(12):4382-95. doi: 10.1021/jp512818g. Epub 2015 Mar 13.

PMID:
25768657
36.

Surface engineered CuO nanowires with ZnO islands for CO2 photoreduction.

Wang WN, Wu F, Myung Y, Niedzwiedzki DM, Im HS, Park J, Banerjee P, Biswas P.

ACS Appl Mater Interfaces. 2015 Mar 18;7(10):5685-92. doi: 10.1021/am508590j. Epub 2015 Mar 5.

PMID:
25723846
37.

Assembly of functional photosystem complexes in Rhodobacter sphaeroides incorporating carotenoids from the spirilloxanthin pathway.

Chi SC, Mothersole DJ, Dilbeck P, Niedzwiedzki DM, Zhang H, Qian P, Vasilev C, Grayson KJ, Jackson PJ, Martin EC, Li Y, Holten D, Neil Hunter C.

Biochim Biophys Acta. 2015 Feb;1847(2):189-201. doi: 10.1016/j.bbabio.2014.10.004. Epub 2014 Oct 27.

38.

Characterisation of the LH2 spectral variants produced by the photosynthetic purple sulphur bacterium Allochromatium vinosum.

Carey AM, Hacking K, Picken N, Honkanen S, Kelly S, Niedzwiedzki DM, Blankenship RE, Shimizu Y, Wang-Otomo ZY, Cogdell RJ.

Biochim Biophys Acta. 2014 Nov;1837(11):1849-1860. doi: 10.1016/j.bbabio.2014.07.022. Epub 2014 Aug 8.

39.

Enhanced light-harvesting capacity by micellar assembly of free accessory chromophores and LH1-like antennas.

Harris MA, Sahin T, Jiang J, Vairaprakash P, Parkes-Loach PS, Niedzwiedzki DM, Kirmaier C, Loach PA, Bocian DF, Holten D, Lindsey JS.

Photochem Photobiol. 2014 Nov-Dec;90(6):1264-76. doi: 10.1111/php.12319. Epub 2014 Sep 5.

PMID:
25039896
40.

Amphiphilic, hydrophilic, or hydrophobic synthetic bacteriochlorins in biohybrid light-harvesting architectures: consideration of molecular designs.

Jiang J, Reddy KR, Pavan MP, Lubian E, Harris MA, Jiao J, Niedzwiedzki DM, Kirmaier C, Parkes-Loach PS, Loach PA, Bocian DF, Holten D, Lindsey JS.

Photosynth Res. 2014 Nov;122(2):187-202. doi: 10.1007/s11120-014-0021-9. Epub 2014 Jul 5.

PMID:
24997120
41.

Triplet excited state energies and phosphorescence spectra of (bacterio)chlorophylls.

Hartzler DA, Niedzwiedzki DM, Bryant DA, Blankenship RE, Pushkar Y, Savikhin S.

J Phys Chem B. 2014 Jul 3;118(26):7221-32. doi: 10.1021/jp500539w. Epub 2014 Jun 20.

PMID:
24896677
42.

Excited state properties of 3'-hydroxyechinenone in solvents and in the orange carotenoid protein from Synechocystis sp. PCC 6803.

Niedzwiedzki DM, Liu H, Blankenship RE.

J Phys Chem B. 2014 Jun 12;118(23):6141-9. doi: 10.1021/jp5041794. Epub 2014 May 30.

PMID:
24846130
43.

Excited state properties of a short π-electron conjugated peridinin analogue.

Magdaong NM, Niedzwiedzki DM, Greco JA, Liu H, Yano K, Kajikawa T, Sakaguchi K, Katsumura S, Birge RR, Frank HA.

Chem Phys Lett. 2014 Feb 11;593:132-139.

44.

Versatile design of biohybrid light-harvesting architectures to tune location, density, and spectral coverage of attached synthetic chromophores for enhanced energy capture.

Harris MA, Jiang J, Niedzwiedzki DM, Jiao J, Taniguchi M, Kirmaier C, Loach PA, Bocian DF, Lindsey JS, Holten D, Parkes-Loach PS.

Photosynth Res. 2014 Jul;121(1):35-48. doi: 10.1007/s11120-014-9993-8. Epub 2014 Mar 7.

PMID:
24604033
45.

Excited state properties of chlorophyll f in organic solvents at ambient and cryogenic temperatures.

Niedzwiedzki DM, Liu H, Chen M, Blankenship RE.

Photosynth Res. 2014 Jul;121(1):25-34. doi: 10.1007/s11120-014-9981-z. Epub 2014 Feb 19.

PMID:
24549930
46.

Photophysical properties and electronic structure of retinylidene-chlorin-chalcones and analogues.

Springer JW, Taniguchi M, Krayer M, Ruzié C, Diers JR, Niedzwiedzki DM, Bocian DF, Lindsey JS, Holten D.

Photochem Photobiol Sci. 2014 Apr;13(4):634-50. doi: 10.1039/c3pp50421b.

PMID:
24496463
47.

Intensity dependence of the excited state lifetimes and triplet conversion yield in the Fenna-Matthews-Olson antenna protein.

Orf GS, Niedzwiedzki DM, Blankenship RE.

J Phys Chem B. 2014 Feb 27;118(8):2058-69. doi: 10.1021/jp411020a. Epub 2014 Feb 18.

PMID:
24490821
48.

Probing electronic communication for efficient light-harvesting functionality: dyads containing a common perylene and a porphyrin, chlorin, or bacteriochlorin.

Yang E, Wang J, Diers JR, Niedzwiedzki DM, Kirmaier C, Bocian DF, Lindsey JS, Holten D.

J Phys Chem B. 2014 Feb 13;118(6):1630-47. doi: 10.1021/jp411629m. Epub 2014 Jan 31.

PMID:
24484243
49.

Photophysical properties of the excited states of bacteriochlorophyll f in solvents and in chlorosomes.

Niedzwiedzki DM, Orf GS, Tank M, Vogl K, Bryant DA, Blankenship RE.

J Phys Chem B. 2014 Mar 6;118(9):2295-305. doi: 10.1021/jp409495m. Epub 2014 Jan 23.

PMID:
24410285
50.

Molecular mechanism of photoactivation and structural location of the cyanobacterial orange carotenoid protein.

Zhang H, Liu H, Niedzwiedzki DM, Prado M, Jiang J, Gross ML, Blankenship RE.

Biochemistry. 2014 Jan 14;53(1):13-9. doi: 10.1021/bi401539w. Epub 2013 Dec 27.

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