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Items: 50

1.

Blame It on the Metabolite: 3,5-Dichloroaniline Rather than the Parent Compound Is Responsible for the Decreasing Diversity and Function of Soil Microorganisms.

Vasileiadis S, Puglisi E, Papadopoulou ES, Pertile G, Suciu N, Pappolla RA, Tourna M, Karas PA, Papadimitriou F, Kasiotakis A, Ipsilanti N, Ferrarini A, Sułowicz S, Fornasier F, Menkissoglu-Spiroudi U, Nicol GW, Trevisan M, Karpouzas DG.

Appl Environ Microbiol. 2018 Oct 30;84(22). pii: e01536-18. doi: 10.1128/AEM.01536-18. Print 2018 Nov 15.

2.

The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions.

Hink L, Gubry-Rangin C, Nicol GW, Prosser JI.

ISME J. 2018 Apr;12(4):1084-1093. doi: 10.1038/s41396-017-0025-5. Epub 2018 Jan 31.

3.

Ammonia-oxidising archaea living at low pH: Insights from comparative genomics.

Herbold CW, Lehtovirta-Morley LE, Jung MY, Jehmlich N, Hausmann B, Han P, Loy A, Pester M, Sayavedra-Soto LA, Rhee SK, Prosser JI, Nicol GW, Wagner M, Gubry-Rangin C.

Environ Microbiol. 2017 Dec;19(12):4939-4952. doi: 10.1111/1462-2920.13971. Epub 2017 Dec 4.

4.

Links between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity.

Nacke H, Schöning I, Schindler M, Schrumpf M, Daniel R, Nicol GW, Prosser JI.

FEMS Microbiol Ecol. 2017 Nov 1;93(11). doi: 10.1093/femsec/fix144.

PMID:
29069386
5.

Kinetics of NH3 -oxidation, NO-turnover, N2 O-production and electron flow during oxygen depletion in model bacterial and archaeal ammonia oxidisers.

Hink L, Lycus P, Gubry-Rangin C, Frostegård Å, Nicol GW, Prosser JI, Bakken LR.

Environ Microbiol. 2017 Dec;19(12):4882-4896. doi: 10.1111/1462-2920.13914. Epub 2017 Sep 21.

PMID:
28892283
6.

Chemotaxonomic characterisation of the thaumarchaeal lipidome.

Elling FJ, Könneke M, Nicol GW, Stieglmeier M, Bayer B, Spieck E, de la Torre JR, Becker KW, Thomm M, Prosser JI, Herndl GJ, Schleper C, Hinrichs KU.

Environ Microbiol. 2017 Jul;19(7):2681-2700. doi: 10.1111/1462-2920.13759. Epub 2017 May 19.

PMID:
28419726
7.

Isolation of 'Candidatus Nitrosocosmicus franklandus', a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration.

Lehtovirta-Morley LE, Ross J, Hink L, Weber EB, Gubry-Rangin C, Thion C, Prosser JI, Nicol GW.

FEMS Microbiol Ecol. 2016 May;92(5):fiw057. doi: 10.1093/femsec/fiw057. Epub 2016 Mar 13.

8.

Archaea produce lower yields of N2 O than bacteria during aerobic ammonia oxidation in soil.

Hink L, Nicol GW, Prosser JI.

Environ Microbiol. 2017 Dec;19(12):4829-4837. doi: 10.1111/1462-2920.13282. Epub 2016 Apr 28.

PMID:
26971439
9.

Effect of nitrogen fertilizer and/or rice straw amendment on methanogenic archaeal communities and methane production from a rice paddy soil.

Bao Q, Huang Y, Wang F, Nie S, Nicol GW, Yao H, Ding L.

Appl Microbiol Biotechnol. 2016 Jul;100(13):5989-98. doi: 10.1007/s00253-016-7377-z. Epub 2016 Feb 29.

PMID:
26923143
10.

Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon "Candidatus Nitrosotalea devanaterra".

Lehtovirta-Morley LE, Sayavedra-Soto LA, Gallois N, Schouten S, Stein LY, Prosser JI, Nicol GW.

Appl Environ Microbiol. 2016 Apr 18;82(9):2608-2619. doi: 10.1128/AEM.04031-15. Print 2016 May.

11.

Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota.

Oton EV, Quince C, Nicol GW, Prosser JI, Gubry-Rangin C.

ISME J. 2016 Jan;10(1):85-96. doi: 10.1038/ismej.2015.101. Epub 2015 Jul 3.

12.

pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils.

Stempfhuber B, Engel M, Fischer D, Neskovic-Prit G, Wubet T, Schöning I, Gubry-Rangin C, Kublik S, Schloter-Hai B, Rattei T, Welzl G, Nicol GW, Schrumpf M, Buscot F, Prosser JI, Schloter M.

Microb Ecol. 2015 May;69(4):879-83. doi: 10.1007/s00248-014-0548-5. Epub 2014 Dec 12.

PMID:
25501889
13.

Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds.

Lehtovirta-Morley LE, Ge C, Ross J, Yao H, Nicol GW, Prosser JI.

FEMS Microbiol Ecol. 2014 Sep;89(3):542-52. doi: 10.1111/1574-6941.12353. Epub 2014 Jul 31.

14.

Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm.

Bartram AK, Jiang X, Lynch MD, Masella AP, Nicol GW, Dushoff J, Neufeld JD.

FEMS Microbiol Ecol. 2014 Feb;87(2):403-15. doi: 10.1111/1574-6941.12231. Epub 2013 Oct 25.

15.

Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey.

Yao H, Campbell CD, Chapman SJ, Freitag TE, Nicol GW, Singh BK.

Environ Microbiol. 2013 Sep;15(9):2545-56. doi: 10.1111/1462-2920.12141. Epub 2013 May 2.

PMID:
23635043
16.

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation.

Prosser JI, Nicol GW.

Trends Microbiol. 2012 Nov;20(11):523-31. doi: 10.1016/j.tim.2012.08.001. Epub 2012 Sep 7. Review.

17.

Resource quality affects carbon cycling in deep-sea sediments.

Mayor DJ, Thornton B, Hay S, Zuur AF, Nicol GW, McWilliam JM, Witte UF.

ISME J. 2012 Sep;6(9):1740-8. doi: 10.1038/ismej.2012.14. Epub 2012 Mar 1.

18.

Niche specialization of terrestrial archaeal ammonia oxidizers.

Gubry-Rangin C, Hai B, Quince C, Engel M, Thomson BC, James P, Schloter M, Griffiths RI, Prosser JI, Nicol GW.

Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21206-11. doi: 10.1073/pnas.1109000108. Epub 2011 Dec 8.

19.

Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen.

Levičnik-Höfferle S, Nicol GW, Ausec L, Mandić-Mulec I, Prosser JI.

FEMS Microbiol Ecol. 2012 Apr;80(1):114-23. doi: 10.1111/j.1574-6941.2011.01275.x. Epub 2012 Jan 9.

20.

Differential photoinhibition of bacterial and archaeal ammonia oxidation.

Merbt SN, Stahl DA, Casamayor EO, Martí E, Nicol GW, Prosser JI.

FEMS Microbiol Lett. 2012 Feb;327(1):41-6. doi: 10.1111/j.1574-6968.2011.02457.x. Epub 2011 Dec 2.

21.

Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil.

Lehtovirta-Morley LE, Stoecker K, Vilcinskas A, Prosser JI, Nicol GW.

Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15892-7. doi: 10.1073/pnas.1107196108. Epub 2011 Sep 6.

22.

Grand challenges in terrestrial microbiology.

Stein LY, Nicol GW.

Front Microbiol. 2011 Jan 25;2:6. doi: 10.3389/fmicb.2011.00006. eCollection 2011. No abstract available.

23.

Links between ammonia oxidizer community structure, abundance, and nitrification potential in acidic soils.

Yao H, Gao Y, Nicol GW, Campbell CD, Prosser JI, Zhang L, Han W, Singh BK.

Appl Environ Microbiol. 2011 Jul;77(13):4618-25. doi: 10.1128/AEM.00136-11. Epub 2011 May 13.

24.

Strategies to determine diversity, growth, and activity of ammonia-oxidizing archaea in soil.

Nicol GW, Prosser JI.

Methods Enzymol. 2011;496:3-34. doi: 10.1016/B978-0-12-386489-5.00001-4.

PMID:
21514458
25.

Community profiling and quantification of putative autotrophic thaumarchaeal communities in environmental samples.

Offre P, Nicol GW, Prosser JI.

Environ Microbiol Rep. 2011 Apr;3(2):245-53. doi: 10.1111/j.1758-2229.2010.00217.x. Epub 2010 Oct 26.

PMID:
23761257
26.

Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms.

Verhamme DT, Prosser JI, Nicol GW.

ISME J. 2011 Jun;5(6):1067-71. doi: 10.1038/ismej.2010.191. Epub 2011 Jan 13.

27.

Ammonia-oxidising archaea--physiology, ecology and evolution.

Schleper C, Nicol GW.

Adv Microb Physiol. 2010;57:1-41. doi: 10.1016/B978-0-12-381045-8.00001-1. Review.

PMID:
21078440
28.

Archaea rather than bacteria control nitrification in two agricultural acidic soils.

Gubry-Rangin C, Nicol GW, Prosser JI.

FEMS Microbiol Ecol. 2010 Dec;74(3):566-74. doi: 10.1111/j.1574-6941.2010.00971.x. Epub 2010 Oct 12.

29.

Ammonium supply rate influences archaeal and bacterial ammonia oxidizers in a wetland soil vertical profile.

Höfferle Š, Nicol GW, Pal L, Hacin J, Prosser JI, Mandić-Mulec I.

FEMS Microbiol Ecol. 2010 Nov;74(2):302-15. doi: 10.1111/j.1574-6941.2010.00961.x.

30.

Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment.

Stopnisek N, Gubry-Rangin C, Höfferle S, Nicol GW, Mandic-Mulec I, Prosser JI.

Appl Environ Microbiol. 2010 Nov;76(22):7626-34. doi: 10.1128/AEM.00595-10. Epub 2010 Oct 1.

31.

Autotrophic ammonia oxidation by soil thaumarchaea.

Zhang LM, Offre PR, He JZ, Verhamme DT, Nicol GW, Prosser JI.

Proc Natl Acad Sci U S A. 2010 Oct 5;107(40):17240-5. doi: 10.1073/pnas.1004947107. Epub 2010 Sep 20.

32.

Molecular phylogeny of slug-parasitic nematodes inferred from 18S rRNA gene sequences.

Ross JL, Ivanova ES, Spiridonov SE, Waeyenberge L, Moens M, Nicol GW, Wilson MJ.

Mol Phylogenet Evol. 2010 May;55(2):738-43. doi: 10.1016/j.ympev.2010.01.026. Epub 2010 Feb 2.

PMID:
20132899
33.

Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context.

Bartossek R, Nicol GW, Lanzen A, Klenk HP, Schleper C.

Environ Microbiol. 2010 Apr;12(4):1075-88. doi: 10.1111/j.1462-2920.2010.02153.x. Epub 2010 Feb 3.

PMID:
20132279
34.

Quantitative assessment of ammonia-oxidizing bacterial communities in the epiphyton of submerged macrophytes in shallow lakes.

Coci M, Nicol GW, Pilloni GN, Schmid M, Kamst-van Agterveld MP, Bodelier PL, Laanbroek HJ.

Appl Environ Microbiol. 2010 Mar;76(6):1813-21. doi: 10.1128/AEM.01917-09. Epub 2010 Jan 22.

35.

Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota.

Lehtovirta LE, Prosser JI, Nicol GW.

FEMS Microbiol Ecol. 2009 Dec;70(3):367-76. doi: 10.1111/j.1574-6941.2009.00748.x. Epub 2009 Jul 24.

36.

Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene.

Offre P, Prosser JI, Nicol GW.

FEMS Microbiol Ecol. 2009 Oct;70(1):99-108. doi: 10.1111/j.1574-6941.2009.00725.x. Epub 2009 Jun 22.

37.

Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment.

Prosser JI, Nicol GW.

Environ Microbiol. 2008 Nov;10(11):2931-41. doi: 10.1111/j.1462-2920.2008.01775.x. Review.

PMID:
18973620
38.

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria.

Nicol GW, Leininger S, Schleper C, Prosser JI.

Environ Microbiol. 2008 Nov;10(11):2966-78. doi: 10.1111/j.1462-2920.2008.01701.x. Epub 2008 Aug 14.

PMID:
18707610
39.

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms.

Tourna M, Freitag TE, Nicol GW, Prosser JI.

Environ Microbiol. 2008 May;10(5):1357-64. doi: 10.1111/j.1462-2920.2007.01563.x. Epub 2008 Mar 4.

PMID:
18325029
40.

Effects of aboveground grazing on coupling among nitrifier activity, abundance and community structure.

Le Roux X, Poly F, Currey P, Commeaux C, Hai B, Nicol GW, Prosser JI, Schloter M, Attard E, Klumpp K.

ISME J. 2008 Feb;2(2):221-32. Epub 2007 Nov 29.

PMID:
18049458
41.

Afforestation of moorland leads to changes in crenarchaeal community structure.

Nicol GW, Campbell CD, Chapman SJ, Prosser JI.

FEMS Microbiol Ecol. 2007 Apr;60(1):51-9. Epub 2007 Jan 30.

42.

Archaea predominate among ammonia-oxidizing prokaryotes in soils.

Leininger S, Urich T, Schloter M, Schwark L, Qi J, Nicol GW, Prosser JI, Schuster SC, Schleper C.

Nature. 2006 Aug 17;442(7104):806-9.

PMID:
16915287
43.

Crenarchaeal community assembly and microdiversity in developing soils at two sites associated with deglaciation.

Nicol GW, Tscherko D, Chang L, Hammesfahr U, Prosser JI.

Environ Microbiol. 2006 Aug;8(8):1382-93.

PMID:
16872402
44.

Ammonia-oxidising Crenarchaeota: important players in the nitrogen cycle?

Nicol GW, Schleper C.

Trends Microbiol. 2006 May;14(5):207-12. Epub 2006 Apr 17.

PMID:
16603359
45.

Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway.

Shaw LJ, Nicol GW, Smith Z, Fear J, Prosser JI, Baggs EM.

Environ Microbiol. 2006 Feb;8(2):214-22.

PMID:
16423010
46.

Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microorganisms.

Rangel-Castro JI, Killham K, Ostle N, Nicol GW, Anderson IC, Scrimgeour CM, Ineson P, Meharg A, Prosser JI.

Environ Microbiol. 2005 Jun;7(6):828-38.

PMID:
15892702
47.

Primary succession of soil Crenarchaeota across a receding glacier foreland.

Nicol GW, Tscherko D, Embley TM, Prosser JI.

Environ Microbiol. 2005 Mar;7(3):337-47.

PMID:
15683394
48.

Differential response of archaeal and bacterial communities to nitrogen inputs and pH changes in upland pasture rhizosphere soil.

Nicol GW, Webster G, Glover LA, Prosser JI.

Environ Microbiol. 2004 Aug;6(8):861-7.

PMID:
15250888
49.

Spatial analysis of archaeal community structure in grassland soil.

Nicol GW, Glover LA, Prosser JI.

Appl Environ Microbiol. 2003 Dec;69(12):7420-9.

50.

The impact of grassland management on archaeal community structure in upland pasture rhizosphere soil.

Nicol GW, Glover LA, Prosser JI.

Environ Microbiol. 2003 Mar;5(3):152-62.

PMID:
12588295

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