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Draft Genome Sequence of Kroppenstedtia sanguinis X0209T, a Clinical Isolate Recovered from Human Blood.

Arthur RA, Nicholson AC, Humrighouse BW, McQuiston JR, Lasker BA.

Microbiol Resour Announc. 2019 Jun 13;8(24). pii: e00354-19. doi: 10.1128/MRA.00354-19.


Histology of Pulmonary and Bronchiolar Disorders in Connective Tissue Diseases.

Brambilla C, Rice A, Nicholson AG.

Semin Respir Crit Care Med. 2019 Apr;40(2):147-158. doi: 10.1055/s-0039-1684029. Epub 2019 May 28.


Aging Impairs Temporal Sensitivity, but not Perceptual Synchrony, Across Modalities.

Scurry AN, Vercillo T, Nicholson A, Webster M, Jiang F.

Multisens Res. 2019 Jan 1:1-22. doi: 10.1163/22134808-20191343. [Epub ahead of print]


Verbal probabilities: Very likely to be somewhat more confusing than numbers.

Wintle BC, Fraser H, Wills BC, Nicholson AE, Fidler F.

PLoS One. 2019 Apr 17;14(4):e0213522. doi: 10.1371/journal.pone.0213522. eCollection 2019.


In Silico Identification of Three Types of Integrative and Conjugative Elements in Elizabethkingia anophelis Strains Isolated from around the World.

Xu J, Pei D, Nicholson A, Lan Y, Xia Q.

mSphere. 2019 Apr 3;4(2). pii: e00040-19. doi: 10.1128/mSphere.00040-19.


Mitochondrial DNA mutations and respiratory chain dysfunction in idiopathic and connective tissue disease-related lung fibrosis.

Jaeger VK, Lebrecht D, Nicholson AG, Wells A, Bhayani H, Gazdhar A, Tamm M, Venhoff N, Geiser T, Walker UA.

Sci Rep. 2019 Apr 2;9(1):5500. doi: 10.1038/s41598-019-41933-4.


Corrigendum to "Interventions aimed at changing impulsive choice in rats: Effects of immediate and relatively long delay to reward training" [Behav. Process. 158 (2019) 126-136.

Fox AE, Visser EJ, Nicholson AM.

Behav Processes. 2019 Jul;164:269. doi: 10.1016/j.beproc.2019.02.005. Epub 2019 Feb 28. No abstract available.


Genetic cause for congenital methemoglobinemia in an Australian Pomeranian dog.

Zhou S, Tearle R, Jozani RJ, Winra B, Schaaf O, Nicholson A, Peaston A.

J Vet Intern Med. 2019 Mar;33(2):868-873. doi: 10.1111/jvim.15435. Epub 2019 Feb 14.


Trends in road transport collision deaths in the Irish paediatric population: a retrospective review of mortality data, 1991-2015.

McGarvey C, Hamilton K, Donnelly J, Nicholson AJ.

BMJ Paediatr Open. 2019 Jan 23;3(1):e000361. doi: 10.1136/bmjpo-2018-000361. eCollection 2019.


Performance of PROMIS Global-10 to Legacy Instruments in Patients With Lateral Epicondylitis.

Kahan JB, Kassam HF, Nicholson AD, Saad MA, Kovacevic D.

Arthroscopy. 2019 Mar;35(3):770-774. doi: 10.1016/j.arthro.2018.09.019. Epub 2019 Jan 21.


Perinodular Vascularity Distinguishes Benign Intrapulmonary Lymph Nodes From Lung Cancer on Computed Tomography.

Barnett J, Pulzato I, Wilson R, Padley S, Nicholson A, Devaraj A.

J Thorac Imaging. 2019 Jan 17. doi: 10.1097/RTI.0000000000000394. [Epub ahead of print]


A Real-Time Multiplex PCR Assay for Detection of Elizabethkingia Species and Differentiation between Elizabethkingia anophelis and E. meningoseptica.

Kelly AJ, Karpathy SE, Gulvik CA, Ivey ML, Whitney AM, Bell ME, Nicholson AC, Humrighouse BW, McQuiston JR.

J Clin Microbiol. 2019 Mar 28;57(4). pii: e01619-18. doi: 10.1128/JCM.01619-18. Print 2019 Apr.


Current Concepts: Evaluation and Treatment of Discoid Meniscus in the Pediatric Athlete.

Nicholson A, Petit L, Egger A, Saluan P, Carter CW.

Am J Orthop (Belle Mead NJ). 2018 Dec;47(12). doi: 10.12788/ajo.2018.0107.


Retrospective response analysis of BAP1 expression to predict the clinical activity of systemic cytotoxic chemotherapy in mesothelioma.

Kumar N, Alrifai D, Kolluri KK, Sage EK, Ishii Y, Guppy N, Borg E, Falzon M, Nankivell M, Nicholson AG, Janes SM.

Lung Cancer. 2019 Jan;127:164-166. doi: 10.1016/j.lungcan.2018.12.004. Epub 2018 Dec 5.


Best Practices Recommendations for Diagnostic Immunohistochemistry in Lung Cancer.

Yatabe Y, Dacic S, Borczuk AC, Warth A, Russell PA, Lantuejoul S, Beasley MB, Thunnissen E, Pelosi G, Rekhtman N, Bubendorf L, Mino-Kenudson M, Yoshida A, Geisinger KR, Noguchi M, Chirieac LR, Bolting J, Chung JH, Chou TY, Chen G, Poleri C, Lopez-Rios F, Papotti M, Sholl LM, Roden AC, Travis WD, Hirsch FR, Kerr KM, Tsao MS, Nicholson AG, Wistuba I, Moreira AL.

J Thorac Oncol. 2019 Mar;14(3):377-407. doi: 10.1016/j.jtho.2018.12.005. Epub 2018 Dec 18.


Early onset children's interstitial lung diseases: Discrete entities or manifestations of pulmonary dysmaturity?

Bush A, Griese M, Seidl E, Kerem E, Reu S, Nicholson AG.

Paediatr Respir Rev. 2018 Oct 9. pii: S1526-0542(18)30133-7. doi: 10.1016/j.prrv.2018.09.004. [Epub ahead of print] Review.


PGAM5 expression and macrophage signatures in non-small cell lung cancer associated with chronic obstructive pulmonary disease (COPD).

Ng Kee Kwong F, Nicholson AG, Pavlidis S, Adcock IM, Chung KF.

BMC Cancer. 2018 Dec 10;18(1):1238. doi: 10.1186/s12885-018-5140-9.


Tales of Detailed Poly(A) Tails.

Nicholson AL, Pasquinelli AE.

Trends Cell Biol. 2019 Mar;29(3):191-200. doi: 10.1016/j.tcb.2018.11.002. Epub 2018 Nov 29. Review.


Performance of PROMIS Global-10 Compared With Legacy Instruments for Rotator Cuff Disease.

Nicholson AD, Kassam HF, Pan SD, Berman JE, Blaine TA, Kovacevic D.

Am J Sports Med. 2019 Jan;47(1):181-188. doi: 10.1177/0363546518810508. Epub 2018 Nov 27.


Mutations in Outer Dynein Arm Heavy Chain DNAH9 Cause Motile Cilia Defects and Situs Inversus.

Fassad MR, Shoemark A, Legendre M, Hirst RA, Koll F, le Borgne P, Louis B, Daudvohra F, Patel MP, Thomas L, Dixon M, Burgoyne T, Hayes J, Nicholson AG, Cullup T, Jenkins L, Carr SB, Aurora P, Lemullois M, Aubusson-Fleury A, Papon JF, O'Callaghan C, Amselem S, Hogg C, Escudier E, Tassin AM, Mitchison HM.

Am J Hum Genet. 2018 Dec 6;103(6):984-994. doi: 10.1016/j.ajhg.2018.10.016. Epub 2018 Nov 21.


Interventions aimed at changing impulsive choice in rats: Effects of immediate and relatively long delay to reward training.

Fox AE, Visser EJ, Nicholson AM.

Behav Processes. 2019 Jan;158:126-136. doi: 10.1016/j.beproc.2018.11.009. Epub 2018 Nov 20. Erratum in: Behav Processes. 2019 Jul;164:269.


Heavy Physics Contributions to Neutrinoless Double Beta Decay from QCD.

Nicholson A, Berkowitz E, Monge-Camacho H, Brantley D, Garron N, Chang CC, Rinaldi E, Clark MA, Joó B, Kurth T, Tiburzi BC, Vranas P, Walker-Loud A.

Phys Rev Lett. 2018 Oct 26;121(17):172501. doi: 10.1103/PhysRevLett.121.172501.


Physiological, biochemical and histopathological changes associated with heatstroke in the galah (Eolophus roseicapilla) and rock dove (Columba livia).

Xie S, Nicholson A, Woolford L, McWhorter TJ.

Avian Pathol. 2019 Feb;48(1):57-72. doi: 10.1080/03079457.2018.1546824.


A Review of the Neurobiological Basis of Trauma-Related Dissociation and Its Relation to Cannabinoid- and Opioid-Mediated Stress Response: a Transdiagnostic, Translational Approach.

Lanius RA, Boyd JE, McKinnon MC, Nicholson AA, Frewen P, Vermetten E, Jetly R, Spiegel D.

Curr Psychiatry Rep. 2018 Nov 7;20(12):118. doi: 10.1007/s11920-018-0983-y. Review.


Further Reductions in Road-Related Deaths and Injuries in Irish Children.

Garry E, Donnelly J, Heffernan S, Mc Garvey C, Nicholson AJ.

Ir Med J. 2018 Apr 19;111(4):728.


As Few Pediatricians as Possible and as Many Pediatricians as Necessary?

Ehrich J, Burla L, Sanz AC, Crushell E, Cullu F, Fruth J, Gerber-Grote A, Hoey H, Illy K, Janda J, Jansen D, Kerbl R, Mestrovic J, Mujkic A, Namazova-Baranova L, Nicholson A, Pettoello-Mantovani M, Pilossoff V, Sargsyans S, Somekh E, Trošelj M, Vural M, Werner A.

J Pediatr. 2018 Nov;202:338-339.e1. doi: 10.1016/j.jpeds.2018.07.074. No abstract available.


Machine learning multivariate pattern analysis predicts classification of posttraumatic stress disorder and its dissociative subtype: a multimodal neuroimaging approach.

Nicholson AA, Densmore M, McKinnon MC, Neufeld RWJ, Frewen PA, Théberge J, Jetly R, Richardson JD, Lanius RA.

Psychol Med. 2018 Oct 11:1-11. doi: 10.1017/S0033291718002866. [Epub ahead of print]


ACTA2 Cerebral Arteriopathy: Not Just a Puff of Smoke.

Cuoco JA, Busch CM, Klein BJ, Benko MJ, Stein R, Nicholson AD, Marvin EA.

Cerebrovasc Dis. 2018;46(3-4):161-171. doi: 10.1159/000493863. Epub 2018 Oct 9. Review.


Somatic cancer genetics in the UK: real-world data from phase I of the Cancer Research UK Stratified Medicine Programme.

Lindsay CR, Shaw EC, Blackhall F, Blyth KG, Brenton JD, Chaturvedi A, Clarke N, Dick C, Evans TRJ, Hall G, Hanby AM, Harrison DJ, Johnston SRD, Mason MD, Morton D, Newton-Bishop J, Nicholson AG, Oien KA, Popat S, Rassl D, Sharpe R, Taniere P, Walker I, Wallace WA, West NP, Butler R, Gonzalez de Castro D, Griffiths M, Johnson PWM.

ESMO Open. 2018 Sep 5;3(6):e000408. doi: 10.1136/esmoopen-2018-000408. eCollection 2018.


Focal Periphyseal Edema: Are We Overtreating Physiologic Adolescent Knee Pain?

Giles E, Nicholson A, Sharkey MS, Carter CW.

J Am Acad Orthop Surg Glob Res Rev. 2018 Apr 16;2(4):e047. doi: 10.5435/JAAOSGlobal-D-17-00047. eCollection 2018 Apr.


The 8th lung cancer TNM classification and clinical staging system: review of the changes and clinical implications.

Lim W, Ridge CA, Nicholson AG, Mirsadraee S.

Quant Imaging Med Surg. 2018 Aug;8(7):709-718. doi: 10.21037/qims.2018.08.02. Review.


Diagnosis of Idiopathic Pulmonary Fibrosis. An Official ATS/ERS/JRS/ALAT Clinical Practice Guideline.

Raghu G, Remy-Jardin M, Myers JL, Richeldi L, Ryerson CJ, Lederer DJ, Behr J, Cottin V, Danoff SK, Morell F, Flaherty KR, Wells A, Martinez FJ, Azuma A, Bice TJ, Bouros D, Brown KK, Collard HR, Duggal A, Galvin L, Inoue Y, Jenkins RG, Johkoh T, Kazerooni EA, Kitaichi M, Knight SL, Mansour G, Nicholson AG, Pipavath SNJ, Buendía-Roldán I, Selman M, Travis WD, Walsh S, Wilson KC; American Thoracic Society, European Respiratory Society, Japanese Respiratory Society, and Latin American Thoracic Society.

Am J Respir Crit Care Med. 2018 Sep 1;198(5):e44-e68. doi: 10.1164/rccm.201807-1255ST.


Alternative mechanisms for Gaia.

Nicholson AE, Wilkinson DM, Williams HTP, Lenton TM.

J Theor Biol. 2018 Nov 14;457:249-257. doi: 10.1016/j.jtbi.2018.08.032. Epub 2018 Aug 25.


Measuring the service system impact of a novel telediagnostic service program for young children with autism spectrum disorder.

Stainbrook JA, Weitlauf AS, Juárez AP, Taylor JL, Hine J, Broderick N, Nicholson A, Warren Z.

Autism. 2019 May;23(4):1051-1056. doi: 10.1177/1362361318787797. Epub 2018 Aug 16.


Humeral Head Ossification Predicts Peak Height Velocity Timing and Percentage of Growth Remaining in Children.

Li DT, Cui JJ, DeVries S, Nicholson AD, Li E, Petit L, Kahan JB, Sanders JO, Liu RW, Cooperman DR, Smith BG.

J Pediatr Orthop. 2018 Oct;38(9):e546-e550. doi: 10.1097/BPO.0000000000001232.


Selection for Gaia across Multiple Scales.

Lenton TM, Daines SJ, Dyke JG, Nicholson AE, Wilkinson DM, Williams HTP.

Trends Ecol Evol. 2018 Aug;33(8):633-645. doi: 10.1016/j.tree.2018.05.006. Epub 2018 Jul 2. Review.


The draft genomes of Elizabethkingia anophelis of equine origin are genetically similar to three isolates from human clinical specimens.

Johnson WL, Ramachandran A, Torres NJ, Nicholson AC, Whitney AM, Bell M, Villarma A, Humrighouse BW, Sheth M, Dowd SE, McQuiston JR, Gustafson JE.

PLoS One. 2018 Jul 19;13(7):e0200731. doi: 10.1371/journal.pone.0200731. eCollection 2018.


Intrinsic connectivity network dynamics in PTSD during amygdala downregulation using real-time fMRI neurofeedback: A preliminary analysis.

Nicholson AA, Rabellino D, Densmore M, Frewen PA, Paret C, Kluetsch R, Schmahl C, Théberge J, Ros T, Neufeld RWJ, McKinnon MC, Reiss JP, Jetly R, Lanius RA.

Hum Brain Mapp. 2018 Nov;39(11):4258-4275. doi: 10.1002/hbm.24244. Epub 2018 Jul 13.


Pulmonary hyalinising granuloma: A rare cause of multiple lung nodules in lung cancer clinic.

Arumugam S, Raju R, Nicholson AG.

Respir Med Case Rep. 2018 Jun 19;25:55-57. doi: 10.1016/j.rmcr.2018.06.012. eCollection 2018.


Correction to: The knowledge, attitudes and practices of doctors regarding antibiotic resistance at a tertiary care institution in the Caribbean.

Nicholson A, Tennant I, White L, Thoms-Rodriguez CA, Cook L, Johnson S, Thompson T, Barnett J, Richards L.

Antimicrob Resist Infect Control. 2018 Jun 25;7:77. doi: 10.1186/s13756-018-0358-5. eCollection 2018.


Hypoxia and eosinophilia in a patient with difficult asthma.

McBrien C, Devaraj A, Nicholson AG, Menzies-Gow A.

Lancet Respir Med. 2018 Jul;6(7):566. doi: 10.1016/S2213-2600(18)30239-X. No abstract available.


Emergency department utilization by newly pregnant adolescents: A community-based study.

Ouellette L, Wigstadt S, Nicholson A, Zamarripa A, Jones J.

Am J Emerg Med. 2019 Feb;37(2):358-360. doi: 10.1016/j.ajem.2018.06.028. Epub 2018 Jun 13. No abstract available.


Partial Tmem106b reduction does not correct abnormalities due to progranulin haploinsufficiency.

Arrant AE, Nicholson AM, Zhou X, Rademakers R, Roberson ED.

Mol Neurodegener. 2018 Jun 22;13(1):32. doi: 10.1186/s13024-018-0264-6.


Towards a more positive view of healthcare in Ireland.

Nicholson A.

Ir J Med Sci. 2019 Feb;188(1):35-41. doi: 10.1007/s11845-018-1830-1. Epub 2018 May 31.


Loss of Tmem106b is unable to ameliorate frontotemporal dementia-like phenotypes in an AAV mouse model of C9ORF72-repeat induced toxicity.

Nicholson AM, Zhou X, Perkerson RB, Parsons TM, Chew J, Brooks M, DeJesus-Hernandez M, Finch NA, Matchett BJ, Kurti A, Jansen-West KR, Perkerson E, Daughrity L, Castanedes-Casey M, Rousseau L, Phillips V, Hu F, Gendron TF, Murray ME, Dickson DW, Fryer JD, Petrucelli L, Rademakers R.

Acta Neuropathol Commun. 2018 May 31;6(1):42. doi: 10.1186/s40478-018-0545-x.


A per-cent-level determination of the nucleon axial coupling from quantum chromodynamics.

Chang CC, Nicholson AN, Rinaldi E, Berkowitz E, Garron N, Brantley DA, Monge-Camacho H, Monahan CJ, Bouchard C, Clark MA, Joó B, Kurth T, Orginos K, Vranas P, Walker-Loud A.

Nature. 2018 Jun;558(7708):91-94. doi: 10.1038/s41586-018-0161-8. Epub 2018 May 30.


PD-L1 Immunohistochemistry Comparability Study in Real-Life Clinical Samples: Results of Blueprint Phase 2 Project.

Tsao MS, Kerr KM, Kockx M, Beasley MB, Borczuk AC, Botling J, Bubendorf L, Chirieac L, Chen G, Chou TY, Chung JH, Dacic S, Lantuejoul S, Mino-Kenudson M, Moreira AL, Nicholson AG, Noguchi M, Pelosi G, Poleri C, Russell PA, Sauter J, Thunnissen E, Wistuba I, Yu H, Wynes MW, Pintilie M, Yatabe Y, Hirsch FR.

J Thorac Oncol. 2018 Sep;13(9):1302-1311. doi: 10.1016/j.jtho.2018.05.013. Epub 2018 May 22.


Fixation and Spread of Somatic Mutations in Adult Human Colonic Epithelium.

Nicholson AM, Olpe C, Hoyle A, Thorsen AS, Rus T, Colombé M, Brunton-Sim R, Kemp R, Marks K, Quirke P, Malhotra S, Ten Hoopen R, Ibrahim A, Lindskog C, Myers MB, Parsons B, Tavaré S, Wilkinson M, Morrissey E, Winton DJ.

Cell Stem Cell. 2018 Jun 1;22(6):909-918.e8. doi: 10.1016/j.stem.2018.04.020. Epub 2018 May 17.


New Insights on Diagnostic Reproducibility of Biphasic Mesotheliomas: A Multi-Institutional Evaluation by the International Mesothelioma Panel From the MESOPATH Reference Center.

Galateau Salle F, Le Stang N, Nicholson AG, Pissaloux D, Churg A, Klebe S, Roggli VL, Tazelaar HD, Vignaud JM, Attanoos R, Beasley MB, Begueret H, Capron F, Chirieac L, Copin MC, Dacic S, Danel C, Foulet-Roge A, Gibbs A, Giusiano-Courcambeck S, Hiroshima K, Hofman V, Husain AN, Kerr K, Marchevsky A, Nabeshima K, Picquenot JM, Rouquette I, Sagan C, Sauter JL, Thivolet F, Travis WD, Tsao MS, Weynand B, Damiola F, Scherpereel A, Pairon JC, Lantuejoul S, Rusch V, Girard N.

J Thorac Oncol. 2018 Aug;13(8):1189-1203. doi: 10.1016/j.jtho.2018.04.023. Epub 2018 Apr 30.


Conformational studies of Gram-negative bacterial quorum sensing acyl homoserine lactone (AHL) molecules: The importance of the n → π* interaction.

Sánchez-Sanz G, Crowe D, Nicholson A, Fleming A, Carey E, Kelleher F.

Biophys Chem. 2018 Jul;238:16-21. doi: 10.1016/j.bpc.2018.04.002. Epub 2018 Apr 17.


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