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Deep learning-based classification of mesothelioma improves prediction of patient outcome.

Courtiol P, Maussion C, Moarii M, Pronier E, Pilcer S, Sefta M, Manceron P, Toldo S, Zaslavskiy M, Le Stang N, Girard N, Elemento O, Nicholson AG, Blay JY, Galateau-Sallé F, Wainrib G, Clozel T.

Nat Med. 2019 Oct 7. doi: 10.1038/s41591-019-0583-3. [Epub ahead of print]


Moving Away from Slapping and Promoting Effective Discipline to Raise Healthy Children in Ireland

Nicholson A.

Ir Med J. 2019 Aug 1;112(7):963. No abstract available.


EURACAN/IASLC proposals for updating the histologic classification of pleural mesothelioma: towards a more multidisciplinary approach.

Nicholson AG, Sauter JL, Nowak AK, Kindler HL, Gill RR, Remy-Jardin M, Armato SG 3rd, Fernandez-Cuesta L, Bueno R, Alcala N, Foll M, Pass H, Attanoos R, Baas P, Beasley MB, Brcic L, Butnor KJ, Chirieac LR, Churg A, Courtiol P, Dacic S, De Perrot M, Frauenfelder T, Gibbs A, Hirsch FR, Hiroshima K, Husain A, Klebe S, Lantuejoul S, Moreira A, Opitz I, Perol M, Roden A, Roggli V, Scherpereel A, Tirode F, Tazelaar H, Travis WD, Tsao MS, van Schil P, Vignaud JM, Weynand B, Cree I, Rusch VW, Girard N, Galateau-Salle F.

J Thorac Oncol. 2019 Sep 20. pii: S1556-0864(19)33232-0. doi: 10.1016/j.jtho.2019.08.2506. [Epub ahead of print]


Sequential screening for lung cancer in a high-risk group: randomised controlled trial.

Spiro SG, Shah PL, Rintoul RC, George J, Janes S, Callister M, Novelli M, Shaw P, Kocjan G, Griffiths C, Falzon M, Booton R, Magee N, Peake M, Dhillon P, Sridharan K, Nicholson AG, Padley S, Taylor MN, Ahmed A, Allen J, Ngai Y, Chinyanganya N, Ashford-Turner V, Lewis S, Oukrif D, Rabbitts P, Counsell N, Hackshaw A.

Eur Respir J. 2019 Sep 19. pii: 1900581. doi: 10.1183/13993003.00581-2019. [Epub ahead of print]


Correlation of ROS1 Immunohistochemistry With ROS1 Fusion Status Determined by Fluorescence In Situ Hybridization.

Huang RSP, Smith D, Le CH, Liu WW, Ordinario E, Manohar C, Lee M, Rajamani J, Truong H, Li J, Choi C, Li J, Pati A, Bubendorf L, Buettner R, Kerr KM, Lopez-Rios F, Marchetti A, Marondel I, Nicholson AG, Öz AB, Pauwels P, Penault-Llorca F, Rossi G, Thunnissen E, Newell AH, Pate G, Menzl I.

Arch Pathol Lab Med. 2019 Sep 11. doi: 10.5858/arpa.2019-0085-OA. [Epub ahead of print]


PTSD and its dissociative subtype through the lens of the insula: Anterior and posterior insula resting-state functional connectivity and its predictive validity using machine learning.

Harricharan S, Nicholson AA, Thome J, Densmore M, McKinnon MC, Théberge J, Frewen PA, Neufeld RWJ, Lanius RA.

Psychophysiology. 2019 Sep 10:e13472. doi: 10.1111/psyp.13472. [Epub ahead of print]


Localized malignant mesothelioma, an unusual and poorly characterized neoplasm of serosal origin: best current evidence from the literature and the International Mesothelioma Panel.

Marchevsky AM, Khoor A, Walts AE, Nicholson AG, Zhang YZ, Roggli V, Carney J, Roden AC, Tazelaar HD, Larsen BT, LeStang N, Chirieac LR, Klebe S, Tsao MS, De Perrot M, Pierre A, Hwang DM, Hung YP, Mino-Kenudson M, Travis W, Sauter J, Beasley MB, Galateau-Sallé F.

Mod Pathol. 2019 Sep 4. doi: 10.1038/s41379-019-0352-3. [Epub ahead of print]


Metabolomic, transcriptomic and genetic integrative analysis reveals important roles of adenosine diphosphate in haemostasis and platelet activation in non-small-cell lung cancer.

Hoang LT, Domingo-Sabugo C, Starren ES, Willis-Owen SAG, Morris-Rosendahl DJ, Nicholson AG, Cookson WOCM, Moffatt MF.

Mol Oncol. 2019 Aug 28. doi: 10.1002/1878-0261.12568. [Epub ahead of print]


Pleuroparenchymal Fibroelastosis: A Review of Clinical, Radiological and Pathological Characteristics.

Chua F, Desai SR, Nicholson AG, Devaraj A, Renzoni E, Rice A, Wells AU.

Ann Am Thorac Soc. 2019 Aug 19. doi: 10.1513/AnnalsATS.201902-181CME. [Epub ahead of print]


Not part of my routine: a qualitative study of use and understanding of UV forecast information and the SunSmart app.

Nicholson A, Murphy M, Walker H, Tinker R, Dobbinson S.

BMC Public Health. 2019 Aug 16;19(1):1127. doi: 10.1186/s12889-019-7421-x.


Household food insecurity is associated with asthma control in Peruvian children living in a resource-poor setting.

Tarazona-Meza CE, Nicholson A, Romero KM, Pollard SL, Gálvez-Davila RM, Hansel NN, Checkley W.

J Asthma. 2019 Aug 16:1-8. doi: 10.1080/02770903.2019.1648506. [Epub ahead of print]


Evaluation of inter-observer variation for computed tomography identification of childhood interstitial lung disease.

Jacob J, Owens CM, Brody AS, Semple T, Watson TA, Calder A, Garcia-Peña P, Toma P, Devaraj A, Walton H, Moreno-Galdó A, Aurora P, Rice A, Vece TJ, Cunningham S, Altmann A, Wells AU, Nicholson AG, Bush A.

ERJ Open Res. 2019 Jul 29;5(3). pii: 00100-2019. doi: 10.1183/23120541.00100-2019. eCollection 2019 Jul.


Delusional parasitosis as presenting symptom of occipital lobe cerebrovascular accident.

Haas NL, Nicholson A, Haas MRC.

Am J Emerg Med. 2019 Jul 25:158368. doi: 10.1016/j.ajem.2019.158368. [Epub ahead of print]


Child-care self-assessment to improve physical activity, oral health and nutrition for 2- to 4-year-olds: a feasibility cluster RCT.

Kipping R, Langford R, Brockman R, Wells S, Metcalfe C, Papadaki A, White J, Hollingworth W, Moore L, Ward D, Campbell R, Kadir B, Tinner L, Er V, Dias K, Busse H, Collingwood J, Nicholson A, Johnson L, Jago R.

Southampton (UK): NIHR Journals Library; 2019 Jul.


Development of a clinical risk calculator for prolonged opioid use after shoulder surgery.

Nicholson AD, Kassam HF, Steele JL, Passarelli NR, Blaine TA, Kovacevic D.

J Shoulder Elbow Surg. 2019 Jul 3. pii: S1058-2746(19)30248-4. doi: 10.1016/j.jse.2019.03.033. [Epub ahead of print]


Teacher perceptions of sun protection practices in the secondary school setting: Barriers, enablers and recommendations for future.

Nicholson AK, Hill J, Walker H, Heward S, Dobbinson S.

Health Promot J Austr. 2019 Jul 3. doi: 10.1002/hpja.273. [Epub ahead of print]


Pathologic Considerations and Standardization in Mesothelioma Clinical Trials.

Tsao MS, Carbone M, Galateau-Salle F, Moreira AL, Nicholson AG, Roden AC, Adjei AA, Aubry MC, Fennell DA, Gomez D, Harpole D, Hesdorffer M, Hirsch FR, Liu G, Malik S, Nowak A, Peikert T, Salgia R, Szlosarek P, Taioli E, Yang H, Tsao A, Mansfield AS.

J Thorac Oncol. 2019 Oct;14(10):1704-1717. doi: 10.1016/j.jtho.2019.06.020. Epub 2019 Jun 28.


Pattern recognition in acute wheeze.

Lynch A, Nicholson A, Bush A, McNally P.

Arch Dis Child Educ Pract Ed. 2019 Jun 29. pii: edpract-2018-314823. doi: 10.1136/archdischild-2018-314823. [Epub ahead of print] No abstract available.


Draft Genome Sequence of Kroppenstedtia sanguinis X0209T, a Clinical Isolate Recovered from Human Blood.

Arthur RA, Nicholson AC, Humrighouse BW, McQuiston JR, Lasker BA.

Microbiol Resour Announc. 2019 Jun 13;8(24). pii: e00354-19. doi: 10.1128/MRA.00354-19.


Histology of Pulmonary and Bronchiolar Disorders in Connective Tissue Diseases.

Brambilla C, Rice A, Nicholson AG.

Semin Respir Crit Care Med. 2019 Apr;40(2):147-158. doi: 10.1055/s-0039-1684029. Epub 2019 May 28.


Aging Impairs Temporal Sensitivity, but not Perceptual Synchrony, Across Modalities.

Scurry AN, Vercillo T, Nicholson A, Webster M, Jiang F.

Multisens Res. 2019 Jan 1:1-22. doi: 10.1163/22134808-20191343. [Epub ahead of print]


Verbal probabilities: Very likely to be somewhat more confusing than numbers.

Wintle BC, Fraser H, Wills BC, Nicholson AE, Fidler F.

PLoS One. 2019 Apr 17;14(4):e0213522. doi: 10.1371/journal.pone.0213522. eCollection 2019.


In Silico Identification of Three Types of Integrative and Conjugative Elements in Elizabethkingia anophelis Strains Isolated from around the World.

Xu J, Pei D, Nicholson A, Lan Y, Xia Q.

mSphere. 2019 Apr 3;4(2). pii: e00040-19. doi: 10.1128/mSphere.00040-19.


Mitochondrial DNA mutations and respiratory chain dysfunction in idiopathic and connective tissue disease-related lung fibrosis.

Jaeger VK, Lebrecht D, Nicholson AG, Wells A, Bhayani H, Gazdhar A, Tamm M, Venhoff N, Geiser T, Walker UA.

Sci Rep. 2019 Apr 2;9(1):5500. doi: 10.1038/s41598-019-41933-4.


Corrigendum to "Interventions aimed at changing impulsive choice in rats: Effects of immediate and relatively long delay to reward training" [Behav. Process. 158 (2019) 126-136.

Fox AE, Visser EJ, Nicholson AM.

Behav Processes. 2019 Jul;164:269. doi: 10.1016/j.beproc.2019.02.005. Epub 2019 Feb 28. No abstract available.


Genetic cause for congenital methemoglobinemia in an Australian Pomeranian dog.

Zhou S, Tearle R, Jozani RJ, Winra B, Schaaf O, Nicholson A, Peaston A.

J Vet Intern Med. 2019 Mar;33(2):868-873. doi: 10.1111/jvim.15435. Epub 2019 Feb 14.


Trends in road transport collision deaths in the Irish paediatric population: a retrospective review of mortality data, 1991-2015.

McGarvey C, Hamilton K, Donnelly J, Nicholson AJ.

BMJ Paediatr Open. 2019 Jan 23;3(1):e000361. doi: 10.1136/bmjpo-2018-000361. eCollection 2019.


Performance of PROMIS Global-10 to Legacy Instruments in Patients With Lateral Epicondylitis.

Kahan JB, Kassam HF, Nicholson AD, Saad MA, Kovacevic D.

Arthroscopy. 2019 Mar;35(3):770-774. doi: 10.1016/j.arthro.2018.09.019. Epub 2019 Jan 21.


Perinodular Vascularity Distinguishes Benign Intrapulmonary Lymph Nodes From Lung Cancer on Computed Tomography.

Barnett J, Pulzato I, Wilson R, Padley S, Nicholson AG, Devaraj A.

J Thorac Imaging. 2019 Sep;34(5):326-328. doi: 10.1097/RTI.0000000000000394.


A Real-Time Multiplex PCR Assay for Detection of Elizabethkingia Species and Differentiation between Elizabethkingia anophelis and E. meningoseptica.

Kelly AJ, Karpathy SE, Gulvik CA, Ivey ML, Whitney AM, Bell ME, Nicholson AC, Humrighouse BW, McQuiston JR.

J Clin Microbiol. 2019 Mar 28;57(4). pii: e01619-18. doi: 10.1128/JCM.01619-18. Print 2019 Apr.


Current Concepts: Evaluation and Treatment of Discoid Meniscus in the Pediatric Athlete.

Nicholson A, Petit L, Egger A, Saluan P, Carter CW.

Am J Orthop (Belle Mead NJ). 2018 Dec;47(12). doi: 10.12788/ajo.2018.0107.


Retrospective response analysis of BAP1 expression to predict the clinical activity of systemic cytotoxic chemotherapy in mesothelioma.

Kumar N, Alrifai D, Kolluri KK, Sage EK, Ishii Y, Guppy N, Borg E, Falzon M, Nankivell M, Nicholson AG, Janes SM.

Lung Cancer. 2019 Jan;127:164-166. doi: 10.1016/j.lungcan.2018.12.004. Epub 2018 Dec 5.


Best Practices Recommendations for Diagnostic Immunohistochemistry in Lung Cancer.

Yatabe Y, Dacic S, Borczuk AC, Warth A, Russell PA, Lantuejoul S, Beasley MB, Thunnissen E, Pelosi G, Rekhtman N, Bubendorf L, Mino-Kenudson M, Yoshida A, Geisinger KR, Noguchi M, Chirieac LR, Bolting J, Chung JH, Chou TY, Chen G, Poleri C, Lopez-Rios F, Papotti M, Sholl LM, Roden AC, Travis WD, Hirsch FR, Kerr KM, Tsao MS, Nicholson AG, Wistuba I, Moreira AL.

J Thorac Oncol. 2019 Mar;14(3):377-407. doi: 10.1016/j.jtho.2018.12.005. Epub 2018 Dec 18.


Early onset children's interstitial lung diseases: Discrete entities or manifestations of pulmonary dysmaturity?

Bush A, Griese M, Seidl E, Kerem E, Reu S, Nicholson AG.

Paediatr Respir Rev. 2019 Apr;30:65-71. doi: 10.1016/j.prrv.2018.09.004. Epub 2018 Oct 9. Review.


PGAM5 expression and macrophage signatures in non-small cell lung cancer associated with chronic obstructive pulmonary disease (COPD).

Ng Kee Kwong F, Nicholson AG, Pavlidis S, Adcock IM, Chung KF.

BMC Cancer. 2018 Dec 10;18(1):1238. doi: 10.1186/s12885-018-5140-9.


Tales of Detailed Poly(A) Tails.

Nicholson AL, Pasquinelli AE.

Trends Cell Biol. 2019 Mar;29(3):191-200. doi: 10.1016/j.tcb.2018.11.002. Epub 2018 Nov 29. Review.


Performance of PROMIS Global-10 Compared With Legacy Instruments for Rotator Cuff Disease.

Nicholson AD, Kassam HF, Pan SD, Berman JE, Blaine TA, Kovacevic D.

Am J Sports Med. 2019 Jan;47(1):181-188. doi: 10.1177/0363546518810508. Epub 2018 Nov 27.


Mutations in Outer Dynein Arm Heavy Chain DNAH9 Cause Motile Cilia Defects and Situs Inversus.

Fassad MR, Shoemark A, Legendre M, Hirst RA, Koll F, le Borgne P, Louis B, Daudvohra F, Patel MP, Thomas L, Dixon M, Burgoyne T, Hayes J, Nicholson AG, Cullup T, Jenkins L, Carr SB, Aurora P, Lemullois M, Aubusson-Fleury A, Papon JF, O'Callaghan C, Amselem S, Hogg C, Escudier E, Tassin AM, Mitchison HM.

Am J Hum Genet. 2018 Dec 6;103(6):984-994. doi: 10.1016/j.ajhg.2018.10.016. Epub 2018 Nov 21.


Interventions aimed at changing impulsive choice in rats: Effects of immediate and relatively long delay to reward training.

Fox AE, Visser EJ, Nicholson AM.

Behav Processes. 2019 Jan;158:126-136. doi: 10.1016/j.beproc.2018.11.009. Epub 2018 Nov 20. Erratum in: Behav Processes. 2019 Jul;164:269.


Heavy Physics Contributions to Neutrinoless Double Beta Decay from QCD.

Nicholson A, Berkowitz E, Monge-Camacho H, Brantley D, Garron N, Chang CC, Rinaldi E, Clark MA, Joó B, Kurth T, Tiburzi BC, Vranas P, Walker-Loud A.

Phys Rev Lett. 2018 Oct 26;121(17):172501. doi: 10.1103/PhysRevLett.121.172501.


Physiological, biochemical and histopathological changes associated with heatstroke in the galah (Eolophus roseicapilla) and rock dove (Columba livia).

Xie S, Nicholson A, Woolford L, McWhorter TJ.

Avian Pathol. 2019 Feb;48(1):57-72. doi: 10.1080/03079457.2018.1546824.


A Review of the Neurobiological Basis of Trauma-Related Dissociation and Its Relation to Cannabinoid- and Opioid-Mediated Stress Response: a Transdiagnostic, Translational Approach.

Lanius RA, Boyd JE, McKinnon MC, Nicholson AA, Frewen P, Vermetten E, Jetly R, Spiegel D.

Curr Psychiatry Rep. 2018 Nov 7;20(12):118. doi: 10.1007/s11920-018-0983-y. Review.


Further Reductions in Road-Related Deaths and Injuries in Irish Children.

Garry E, Donnelly J, Heffernan S, Mc Garvey C, Nicholson AJ.

Ir Med J. 2018 Apr 19;111(4):728.


As Few Pediatricians as Possible and as Many Pediatricians as Necessary?

Ehrich J, Burla L, Sanz AC, Crushell E, Cullu F, Fruth J, Gerber-Grote A, Hoey H, Illy K, Janda J, Jansen D, Kerbl R, Mestrovic J, Mujkic A, Namazova-Baranova L, Nicholson A, Pettoello-Mantovani M, Pilossoff V, Sargsyans S, Somekh E, Trošelj M, Vural M, Werner A.

J Pediatr. 2018 Nov;202:338-339.e1. doi: 10.1016/j.jpeds.2018.07.074. No abstract available.


Machine learning multivariate pattern analysis predicts classification of posttraumatic stress disorder and its dissociative subtype: a multimodal neuroimaging approach.

Nicholson AA, Densmore M, McKinnon MC, Neufeld RWJ, Frewen PA, Théberge J, Jetly R, Richardson JD, Lanius RA.

Psychol Med. 2019 Sep;49(12):2049-2059. doi: 10.1017/S0033291718002866. Epub 2018 Oct 11.


ACTA2 Cerebral Arteriopathy: Not Just a Puff of Smoke.

Cuoco JA, Busch CM, Klein BJ, Benko MJ, Stein R, Nicholson AD, Marvin EA.

Cerebrovasc Dis. 2018;46(3-4):161-171. doi: 10.1159/000493863. Epub 2018 Oct 9. Review.


Somatic cancer genetics in the UK: real-world data from phase I of the Cancer Research UK Stratified Medicine Programme.

Lindsay CR, Shaw EC, Blackhall F, Blyth KG, Brenton JD, Chaturvedi A, Clarke N, Dick C, Evans TRJ, Hall G, Hanby AM, Harrison DJ, Johnston SRD, Mason MD, Morton D, Newton-Bishop J, Nicholson AG, Oien KA, Popat S, Rassl D, Sharpe R, Taniere P, Walker I, Wallace WA, West NP, Butler R, Gonzalez de Castro D, Griffiths M, Johnson PWM.

ESMO Open. 2018 Sep 5;3(6):e000408. doi: 10.1136/esmoopen-2018-000408. eCollection 2018.


Focal Periphyseal Edema: Are We Overtreating Physiologic Adolescent Knee Pain?

Giles E, Nicholson A, Sharkey MS, Carter CW.

J Am Acad Orthop Surg Glob Res Rev. 2018 Apr 16;2(4):e047. doi: 10.5435/JAAOSGlobal-D-17-00047. eCollection 2018 Apr.


The 8th lung cancer TNM classification and clinical staging system: review of the changes and clinical implications.

Lim W, Ridge CA, Nicholson AG, Mirsadraee S.

Quant Imaging Med Surg. 2018 Aug;8(7):709-718. doi: 10.21037/qims.2018.08.02. Review.


Diagnosis of Idiopathic Pulmonary Fibrosis. An Official ATS/ERS/JRS/ALAT Clinical Practice Guideline.

Raghu G, Remy-Jardin M, Myers JL, Richeldi L, Ryerson CJ, Lederer DJ, Behr J, Cottin V, Danoff SK, Morell F, Flaherty KR, Wells A, Martinez FJ, Azuma A, Bice TJ, Bouros D, Brown KK, Collard HR, Duggal A, Galvin L, Inoue Y, Jenkins RG, Johkoh T, Kazerooni EA, Kitaichi M, Knight SL, Mansour G, Nicholson AG, Pipavath SNJ, Buendía-Roldán I, Selman M, Travis WD, Walsh S, Wilson KC; American Thoracic Society, European Respiratory Society, Japanese Respiratory Society, and Latin American Thoracic Society.

Am J Respir Crit Care Med. 2018 Sep 1;198(5):e44-e68. doi: 10.1164/rccm.201807-1255ST.


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