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Selection of Heterologous Protein-Producing Strains in Yarrowia lipolytica.

Soudier P, Larroude M, Celińska E, Rossignol T, Nicaud JM.

Methods Mol Biol. 2019;1923:153-168. doi: 10.1007/978-1-4939-9024-5_6.


Optimization of cyclopropane fatty acids production in Yarrowia lipolytica.

Czerwiec Q, Idrissitaghki A, Imatoukene N, Nonus M, Thomasset B, Nicaud JM, Rossignol T.

Yeast. 2019 Mar;36(3):143-151. doi: 10.1002/yea.3379. Epub 2019 Feb 6.


Genetic engineering of Ehrlich pathway modulates production of higher alcohols in engineered Yarrowia lipolytica.

Celinska E, Borkowska M, Bialas W, Kubiak M, Korpys P, Archacka M, Ledesma-Amaro R, Nicaud JM.

FEMS Yeast Res. 2019 Mar 1;19(2). doi: 10.1093/femsyr/foy122.


Filamentous fungi-like secretory pathway strayed in a yeast system: peculiarities of Yarrowia lipolytica secretory pathway underlying its extraordinary performance.

Celińska E, Nicaud JM.

Appl Microbiol Biotechnol. 2019 Jan;103(1):39-52. doi: 10.1007/s00253-018-9450-2. Epub 2018 Oct 23. Review.


Synthetic biology tools for engineering Yarrowia lipolytica.

Larroude M, Rossignol T, Nicaud JM, Ledesma-Amaro R.

Biotechnol Adv. 2018 Dec;36(8):2150-2164. doi: 10.1016/j.biotechadv.2018.10.004. Epub 2018 Oct 11. Review.


Engineering the architecture of erythritol-inducible promoters for regulated and enhanced gene expression in Yarrowia lipolytica.

Park YK, Korpys P, Kubiak M, Celinska E, Soudier P, Trébulle P, Larroude M, Rossignol T, Nicaud JM.

FEMS Yeast Res. 2019 Jan 1;19(1). doi: 10.1093/femsyr/foy105.


A gas chromatography full scan high resolution Orbitrap mass spectrometry method for separation and characterization of 3-hydroxymethyl pyridine ester of fatty acids at low levels.

Merlier F, Imatoukene N, Octave S, Nicaud JM, Thomasset B.

J Chromatogr A. 2018 Nov 9;1575:72-79. doi: 10.1016/j.chroma.2018.09.010. Epub 2018 Sep 7.


Synthetic Biology to Improve the Production of Lipases and Esterases (Review).

Gamboa-Melendez H, Larroude M, Park YK, Trebul P, Nicaud JM, Ledesma-Amaro R.

Methods Mol Biol. 2018;1835:229-242. doi: 10.1007/978-1-4939-8672-9_13.


Identification and characterization of EYD1, encoding an erythritol dehydrogenase in Yarrowia lipolytica and its application to bioconvert erythritol into erythrulose.

Carly F, Steels S, Telek S, Vandermies M, Nicaud JM, Fickers P.

Bioresour Technol. 2018 Jan;247:963-969. doi: 10.1016/j.biortech.2017.09.168. Epub 2017 Sep 27.


Optimization of odd chain fatty acid production by Yarrowia lipolytica.

Park YK, Dulermo T, Ledesma-Amaro R, Nicaud JM.

Biotechnol Biofuels. 2018 Jun 7;11:158. doi: 10.1186/s13068-018-1154-4. eCollection 2018.


Robust signal peptides for protein secretion in Yarrowia lipolytica: identification and characterization of novel secretory tags.

Celińska E, Borkowska M, Białas W, Korpys P, Nicaud JM.

Appl Microbiol Biotechnol. 2018 Jun;102(12):5221-5233. doi: 10.1007/s00253-018-8966-9. Epub 2018 Apr 27.


Yarrowia lipolytica morphological mutant enables lasting in situ immobilization in bioreactor.

Vandermies M, Kar T, Carly F, Nicaud JM, Delvigne F, Fickers P.

Appl Microbiol Biotechnol. 2018 Jul;102(13):5473-5482. doi: 10.1007/s00253-018-9006-5. Epub 2018 Apr 26.


Overexpression screen reveals transcription factors involved in lipid accumulation in Yarrowia lipolytica.

Leplat C, Nicaud JM, Rossignol T.

FEMS Yeast Res. 2018 Aug 1;18(5). doi: 10.1093/femsyr/foy037.


Engineering Yarrowia lipolytica to enhance lipid production from lignocellulosic materials.

Niehus X, Crutz-Le Coq AM, Sandoval G, Nicaud JM, Ledesma-Amaro R.

Biotechnol Biofuels. 2018 Jan 22;11:11. doi: 10.1186/s13068-018-1010-6. eCollection 2018.


Expressing accessory proteins in cellulolytic Yarrowia lipolytica to improve the conversion yield of recalcitrant cellulose.

Guo ZP, Duquesne S, Bozonnet S, Nicaud JM, Marty A, O'Donohue MJ.

Biotechnol Biofuels. 2017 Dec 11;10:298. doi: 10.1186/s13068-017-0990-y. eCollection 2017.


The Engineering Potential of Rhodosporidium toruloides as a Workhorse for Biotechnological Applications.

Park YK, Nicaud JM, Ledesma-Amaro R.

Trends Biotechnol. 2018 Mar;36(3):304-317. doi: 10.1016/j.tibtech.2017.10.013. Epub 2017 Nov 10. Review.


Modulation of the Glycerol Phosphate availability led to concomitant reduction in the citric acid excretion and increase in lipid content and yield in Yarrowia lipolytica.

Sagnak R, Cochot S, Molina-Jouve C, Nicaud JM, Guillouet SE.

J Biotechnol. 2018 Jan 10;265:40-45. doi: 10.1016/j.jbiotec.2017.11.001. Epub 2017 Nov 2.


A synthetic biology approach to transform Yarrowia lipolytica into a competitive biotechnological producer of β-carotene.

Larroude M, Celinska E, Back A, Thomas S, Nicaud JM, Ledesma-Amaro R.

Biotechnol Bioeng. 2018 Feb;115(2):464-472. doi: 10.1002/bit.26473. Epub 2017 Nov 3.


Inference and interrogation of a coregulatory network in the context of lipid accumulation in Yarrowia lipolytica.

Trébulle P, Nicaud JM, Leplat C, Elati M.

NPJ Syst Biol Appl. 2017 Aug 11;3:21. doi: 10.1038/s41540-017-0024-1. eCollection 2017.


New inducible promoter for gene expression and synthetic biology in Yarrowia lipolytica.

Trassaert M, Vandermies M, Carly F, Denies O, Thomas S, Fickers P, Nicaud JM.

Microb Cell Fact. 2017 Aug 15;16(1):141. doi: 10.1186/s12934-017-0755-0.


Erratum to: Identification and characterization of EYK1, a key gene for erythritol catabolism in Yarrowia lipolytica.

Carly F, Gamboa-Melendez H, Vandermies M, Damblon C, Nicaud JM, Fickers P.

Appl Microbiol Biotechnol. 2017 Aug;101(16):6573. doi: 10.1007/s00253-017-8412-4. No abstract available.


Identification and characterization of EYK1, a key gene for erythritol catabolism in Yarrowia lipolytica.

Carly F, Gamboa-Melendez H, Vandermies M, Damblon C, Nicaud JM, Fickers P.

Appl Microbiol Biotechnol. 2017 Sep;101(17):6587-6596. doi: 10.1007/s00253-017-8361-y. Epub 2017 Jun 12. Erratum in: Appl Microbiol Biotechnol. 2017 Jul 12;:.


EYK1 encoding erythrulose kinase as a catabolic selectable marker for genome editing in the non-conventional yeast Yarrowia lipolytica.

Vandermies M, Denies O, Nicaud JM, Fickers P.

J Microbiol Methods. 2017 Aug;139:161-164. doi: 10.1016/j.mimet.2017.05.012. Epub 2017 May 26.


Enhancing erythritol productivity in Yarrowia lipolytica using metabolic engineering.

Carly F, Vandermies M, Telek S, Steels S, Thomas S, Nicaud JM, Fickers P.

Metab Eng. 2017 Jul;42:19-24. doi: 10.1016/j.ymben.2017.05.002. Epub 2017 May 22.


Conferring cellulose-degrading ability to Yarrowia lipolytica to facilitate a consolidated bioprocessing approach.

Guo ZP, Duquesne S, Bozonnet S, Cioci G, Nicaud JM, Marty A, O'Donohue MJ.

Biotechnol Biofuels. 2017 May 19;10:132. doi: 10.1186/s13068-017-0819-8. eCollection 2017.


Sugar versus fat: elimination of glycogen storage improves lipid accumulation in Yarrowia lipolytica.

Bhutada G, Kavšcek M, Ledesma-Amaro R, Thomas S, Rechberger GN, Nicaud JM, Natter K.

FEMS Yeast Res. 2017 May 1;17(3). doi: 10.1093/femsyr/fox020.


Sugar versus fat: elimination of glycogen storage improves lipid accumulation in Yarrowia lipolytica.

Bhutada G, Kavšcek M, Ledesma-Amaro R, Thomas S, Rechberger GN, Nicaud JM, Natter K.

FEMS Yeast Res. 2017 Apr 17. doi: 10.1093/femsle/fox020. [Epub ahead of print]


A metabolic engineering strategy for producing conjugated linoleic acids using the oleaginous yeast Yarrowia lipolytica.

Imatoukene N, Verbeke J, Beopoulos A, Idrissi Taghki A, Thomasset B, Sarde CO, Nonus M, Nicaud JM.

Appl Microbiol Biotechnol. 2017 Jun;101(11):4605-4616. doi: 10.1007/s00253-017-8240-6. Epub 2017 Mar 29.


Transforming sugars into fat - lipid biosynthesis using different sugars in Yarrowia lipolytica.

Hapeta P, Rakicka M, Dulermo R, Gamboa-Meléndez H, Cruz-Le Coq AM, Nicaud JM, Lazar Z.

Yeast. 2017 Jul;34(7):293-304. doi: 10.1002/yea.3232. Epub 2017 Apr 20.


Golden Gate Assembly system dedicated to complex pathway manipulation in Yarrowia lipolytica.

Celińska E, Ledesma-Amaro R, Larroude M, Rossignol T, Pauthenier C, Nicaud JM.

Microb Biotechnol. 2017 Mar;10(2):450-455. doi: 10.1111/1751-7915.12605. Epub 2017 Feb 19.


Using a vector pool containing variable-strength promoters to optimize protein production in Yarrowia lipolytica.

Dulermo R, Brunel F, Dulermo T, Ledesma-Amaro R, Vion J, Trassaert M, Thomas S, Nicaud JM, Leplat C.

Microb Cell Fact. 2017 Feb 17;16(1):31. doi: 10.1186/s12934-017-0647-3.


Droplet-based microfluidic high-throughput screening of heterologous enzymes secreted by the yeast Yarrowia lipolytica.

Beneyton T, Thomas S, Griffiths AD, Nicaud JM, Drevelle A, Rossignol T.

Microb Cell Fact. 2017 Jan 31;16(1):18. doi: 10.1186/s12934-017-0629-5.


Characterization of hexose transporters in Yarrowia lipolytica reveals new groups of Sugar Porters involved in yeast growth.

Lazar Z, Neuvéglise C, Rossignol T, Devillers H, Morin N, Robak M, Nicaud JM, Crutz-Le Coq AM.

Fungal Genet Biol. 2017 Mar;100:1-12. doi: 10.1016/j.fgb.2017.01.001. Epub 2017 Jan 5.


Metabolic engineering of Yarrowia lipolytica to produce chemicals and fuels from xylose.

Ledesma-Amaro R, Lazar Z, Rakicka M, Guo Z, Fouchard F, Coq AC, Nicaud JM.

Metab Eng. 2016 Nov;38:115-124. doi: 10.1016/j.ymben.2016.07.001. Epub 2016 Jul 7.


Combining metabolic engineering and process optimization to improve production and secretion of fatty acids.

Ledesma-Amaro R, Dulermo R, Niehus X, Nicaud JM.

Metab Eng. 2016 Nov;38:38-46. doi: 10.1016/j.ymben.2016.06.004. Epub 2016 Jun 11.


Deciphering how LIP2 and POX2 promoters can optimally regulate recombinant protein production in the yeast Yarrowia lipolytica.

Sassi H, Delvigne F, Kar T, Nicaud JM, Coq AM, Steels S, Fickers P.

Microb Cell Fact. 2016 Sep 20;15(1):159. doi: 10.1186/s12934-016-0558-8.


High-throughput fermentation screening for the yeast Yarrowia lipolytica with real-time monitoring of biomass and lipid production.

Back A, Rossignol T, Krier F, Nicaud JM, Dhulster P.

Microb Cell Fact. 2016 Aug 23;15(1):147. doi: 10.1186/s12934-016-0546-z.


Overexpression of diacylglycerol acyltransferase in Yarrowia lipolytica affects lipid body size, number and distribution.

Gajdoš P, Ledesma-Amaro R, Nicaud JM, Čertík M, Rossignol T.

FEMS Yeast Res. 2016 Sep;16(6). pii: fow062. doi: 10.1093/femsyr/fow062. Epub 2016 Aug 8.


Metabolic Engineering for Expanding the Substrate Range of Yarrowia lipolytica.

Ledesma-Amaro R, Nicaud JM.

Trends Biotechnol. 2016 Oct;34(10):798-809. doi: 10.1016/j.tibtech.2016.04.010. Review.


Yarrowia lipolytica AAL genes are involved in peroxisomal fatty acid activation.

Dulermo R, Gamboa-Meléndez H, Ledesma-Amaro R, Thevenieau F, Nicaud JM.

Biochim Biophys Acta. 2016 Jul;1861(7):555-65. doi: 10.1016/j.bbalip.2016.04.002. Epub 2016 Apr 9.


Yarrowia lipolytica as a biotechnological chassis to produce usual and unusual fatty acids.

Ledesma-Amaro R, Nicaud JM.

Prog Lipid Res. 2016 Jan;61:40-50. doi: 10.1016/j.plipres.2015.12.001. Epub 2015 Dec 15. Review.


Awakening the endogenous Leloir pathway for efficient galactose utilization by Yarrowia lipolytica.

Lazar Z, Gamboa-Meléndez H, Le Coq AM, Neuvéglise C, Nicaud JM.

Biotechnol Biofuels. 2015 Nov 25;8:185. doi: 10.1186/s13068-015-0370-4. eCollection 2015.


Molecular Characterization of the Elaeis guineensis Medium-Chain Fatty Acid Diacylglycerol Acyltransferase DGAT1-1 by Heterologous Expression in Yarrowia lipolytica.

Aymé L, Jolivet P, Nicaud JM, Chardot T.

PLoS One. 2015 Nov 18;10(11):e0143113. doi: 10.1371/journal.pone.0143113. eCollection 2015.


Comprehensive Analysis of a Yeast Lipase Family in the Yarrowia Clade.

Meunchan M, Michely S, Devillers H, Nicaud JM, Marty A, Neuvéglise C.

PLoS One. 2015 Nov 18;10(11):e0143096. doi: 10.1371/journal.pone.0143096. eCollection 2015.


Engineering Yarrowia lipolytica to produce biodiesel from raw starch.

Ledesma-Amaro R, Dulermo T, Nicaud JM.

Biotechnol Biofuels. 2015 Sep 15;8:148. doi: 10.1186/s13068-015-0335-7. eCollection 2015.


Development of cellobiose-degrading ability in Yarrowia lipolytica strain by overexpression of endogenous genes.

Guo Z, Duquesne S, Bozonnet S, Cioci G, Nicaud JM, Marty A, O'Donohue MJ.

Biotechnol Biofuels. 2015 Aug 4;8:109. doi: 10.1186/s13068-015-0289-9. eCollection 2015.


Lipid production by the oleaginous yeast Yarrowia lipolytica using industrial by-products under different culture conditions.

Rakicka M, Lazar Z, Dulermo T, Fickers P, Nicaud JM.

Biotechnol Biofuels. 2015 Jul 25;8:104. doi: 10.1186/s13068-015-0286-z. eCollection 2015.


High-throughput transformation method for Yarrowia lipolytica mutant library screening.

Leplat C, Nicaud JM, Rossignol T.

FEMS Yeast Res. 2015 Sep;15(6). pii: fov052. doi: 10.1093/femsyr/fov052. Epub 2015 Jun 22.


Single cell oil production on molasses by Yarrowia lipolytica strains overexpressing DGA2 in multicopy.

Gajdoš P, Nicaud JM, Rossignol T, Čertík M.

Appl Microbiol Biotechnol. 2015 Oct;99(19):8065-74. doi: 10.1007/s00253-015-6733-8. Epub 2015 Jun 16.


Analysis of ATP-citrate lyase and malic enzyme mutants of Yarrowia lipolytica points out the importance of mannitol metabolism in fatty acid synthesis.

Dulermo T, Lazar Z, Dulermo R, Rakicka M, Haddouche R, Nicaud JM.

Biochim Biophys Acta. 2015 Sep;1851(9):1107-17. doi: 10.1016/j.bbalip.2015.04.007. Epub 2015 May 8.

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