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Items: 41

1.

Drastic Change in Electronic Transition upon Hydrogen Bond Network Switching in 3-Aminopyridine-(H2O) n Clusters.

Yamada Y, Goto Y, Higuchi S, Nibu Y.

J Phys Chem A. 2019 May 2;123(17):3728-3734. doi: 10.1021/acs.jpca.9b00878. Epub 2019 Apr 18.

PMID:
30964286
2.

Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord.

José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A.

PLoS Genet. 2015 Dec 18;11(12):e1005730. doi: 10.1371/journal.pgen.1005730. eCollection 2015 Dec.

3.

Correction: The Nutrient-Responsive Hormone CCHamide-2 Controls Growth by Regulating Insulin-like Peptides in the Brain of Drosophila melanogaster.

Sano H, Nakamura A, Texada MJ, Truman JW, Ishimoto H, Kamikouchi A, Nibu Y, Kume K, Ida T, Kojima M.

PLoS Genet. 2015 Sep 22;11(9):e1005481. doi: 10.1371/journal.pgen.1005481. eCollection 2015 Sep. No abstract available.

4.

The Nutrient-Responsive Hormone CCHamide-2 Controls Growth by Regulating Insulin-like Peptides in the Brain of Drosophila melanogaster.

Sano H, Nakamura A, Texada MJ, Truman JW, Ishimoto H, Kamikouchi A, Nibu Y, Kume K, Ida T, Kojima M.

PLoS Genet. 2015 May 28;11(5):e1005209. doi: 10.1371/journal.pgen.1005209. eCollection 2015 May. Erratum in: PLoS Genet. 2015 Sep;11(9):e1005481.

5.

Functional Brachyury binding sites establish a temporal read-out of gene expression in the Ciona notochord.

Katikala L, Aihara H, Passamaneck YJ, Gazdoiu S, José-Edwards DS, Kugler JE, Oda-Ishii I, Imai JH, Nibu Y, Di Gregorio A.

PLoS Biol. 2013 Oct;11(10):e1001697. doi: 10.1371/journal.pbio.1001697. Epub 2013 Oct 29.

6.

Tbx2/3 is an essential mediator within the Brachyury gene network during Ciona notochord development.

José-Edwards DS, Oda-Ishii I, Nibu Y, Di Gregorio A.

Development. 2013 Jun;140(11):2422-33. doi: 10.1242/dev.094227.

7.

From notochord formation to hereditary chordoma: the many roles of Brachyury.

Nibu Y, José-Edwards DS, Di Gregorio A.

Biomed Res Int. 2013;2013:826435. doi: 10.1155/2013/826435. Epub 2013 Mar 31. Review.

8.

Optimization of a method for chromatin immunoprecipitation assays in the marine invertebrate chordate Ciona.

Aihara H, Katikala L, Zeller RW, Di Gregorio A, Nibu Y.

Mar Biotechnol (NY). 2013 Oct;15(5):520-5. doi: 10.1007/s10126-013-9504-5. Epub 2013 Apr 17.

9.

Comparable strength of OH-O versus OH-π hydrogen bonds in hydrogen-bonded 2,3-benzofuran clusters with water and methanol.

Sasaki H, Daicho S, Yamada Y, Nibu Y.

J Phys Chem A. 2013 Apr 18;117(15):3183-9. doi: 10.1021/jp400676x. Epub 2013 Apr 4.

PMID:
23517236
10.

Solvation effect on the NH stretching vibrations of solvated aminopyrazine, 2-aminopyridine, and 3-aminopyridine clusters.

Yamada Y, Ohba H, Noboru Y, Daicho S, Nibu Y.

J Phys Chem A. 2012 Sep 20;116(37):9271-8. Epub 2012 Sep 11.

PMID:
22937786
11.

Akirin links twist-regulated transcription with the Brahma chromatin remodeling complex during embryogenesis.

Nowak SJ, Aihara H, Gonzalez K, Nibu Y, Baylies MK.

PLoS Genet. 2012;8(3):e1002547. doi: 10.1371/journal.pgen.1002547. Epub 2012 Mar 1.

12.

Conformation of 2,2,2-trifluoroethanol and the solvation structure of its 2-fluoropyridine clusters.

Yamada Y, Noboru Y, Sakaguchi T, Nibu Y.

J Phys Chem A. 2012 Mar 22;116(11):2845-54. doi: 10.1021/jp300721r. Epub 2012 Mar 8.

PMID:
22364619
13.

Radio frequency magnetic field effects on molecular dynamics and iron uptake in cage proteins.

Céspedes O, Inomoto O, Kai S, Nibu Y, Yamaguchi T, Sakamoto N, Akune T, Inoue M, Kiss T, Ueno S.

Bioelectromagnetics. 2010 May;31(4):311-7. doi: 10.1002/bem.20564.

PMID:
20082334
14.

CtBP is required for proper development of peripheral nervous system in Drosophila.

Stern MD, Aihara H, Roccaro GA, Cheung L, Zhang H, Negeri D, Nibu Y.

Mech Dev. 2009 Jan-Feb;126(1-2):68-79. doi: 10.1016/j.mod.2008.10.003. Epub 2008 Oct 17.

15.

Drosophila Ebi mediates Snail-dependent transcriptional repression through HDAC3-induced histone deacetylation.

Qi D, Bergman M, Aihara H, Nibu Y, Mannervik M.

EMBO J. 2008 Mar 19;27(6):898-909. doi: 10.1038/emboj.2008.26. Epub 2008 Feb 28.

16.

Structurally related Arabidopsis ANGUSTIFOLIA is functionally distinct from the transcriptional corepressor CtBP.

Stern MD, Aihara H, Cho KH, Kim GT, Horiguchi G, Roccaro GA, Guevara E, Sun HH, Negeri D, Tsukaya H, Nibu Y.

Dev Genes Evol. 2007 Dec;217(11-12):759-69. Epub 2007 Oct 31.

PMID:
17972097
17.

The acetyltransferase activity of Drosophila CBP is dispensable for regulation of the Dpp pathway in the early embryo.

Lilja T, Aihara H, Stabell M, Nibu Y, Mannervik M.

Dev Biol. 2007 May 15;305(2):650-8. Epub 2007 Feb 7.

18.

IR spectroscopy of hydrogen-bonded 2-fluoropyridine-methanol clusters.

Nibu Y, Marui R, Shimada H.

J Phys Chem A. 2006 Nov 23;110(46):12597-602.

PMID:
17107109
19.

Infrared spectroscopy of hydrogen-bonded 2-fluoropyridine-water clusters in supersonic jets.

Nibu Y, Marui R, Shimada H.

J Phys Chem A. 2006 Aug 10;110(31):9627-32.

PMID:
16884196
20.

Synthesis and reaction of alpha-dithiolactone.

Shigetomi T, Soejima H, Nibu Y, Shioji K, Okuma K, Yokomori Y.

Chemistry. 2006 Oct 10;12(29):7742-8.

PMID:
16819724
21.

Electronic spectra of hydrogen-bonded 2-fluoropyridine clusters with water in a supersonic free jet.

Nibu Y, Okabe C, Ohsaki T, Shimada H.

J Phys Chem A. 2006 May 11;110(18):6047-53.

PMID:
16671674
22.

Synthesis of isolable thiirane-2-thione (alpha-dithiolactone) from thioketene S-oxide.

Okuma K, Shigetomi T, Nibu Y, Shioji K, Yoshida M, Yokomori Y.

J Am Chem Soc. 2004 Aug 11;126(31):9508-9.

PMID:
15291532
23.

Finb, a multiple zinc finger protein, represses transcription of the human angiotensinogen gene.

Date S, Nibu Y, Yanai K, Hirata J, Yagami K, Fukamizu A.

Int J Mol Med. 2004 May;13(5):637-42.

PMID:
15067362
24.

CtBP-independent repression in the Drosophila embryo.

Nibu Y, Senger K, Levine M.

Mol Cell Biol. 2003 Jun;23(11):3990-9.

25.

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.

Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, Levine M, Rubin GM, Eisen MB.

Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):757-62.

26.

CtBP-dependent activities of the short-range Giant repressor in the Drosophila embryo.

Nibu Y, Levine MS.

Proc Natl Acad Sci U S A. 2001 May 22;98(11):6204-8. Epub 2001 May 15.

27.

Local action of long-range repressors in the Drosophila embryo.

Nibu Y, Zhang H, Levine M.

EMBO J. 2001 May 1;20(9):2246-53.

28.

Regulated expression of human angiotensinogen gene by hepatocyte nuclear factor 4 and chicken ovalbumin upstream promoter-transcription factor.

Yanai K, Hirota K, Taniguchi-Yanai K, Shigematsu Y, Shimamoto Y, Saito T, Chowdhury S, Takiguchi M, Arakawa M, Nibu Y, Sugiyama F, Yagami K, Fukamizu A.

J Biol Chem. 1999 Dec 3;274(49):34605-12.

29.

Transcriptional coregulators in development.

Mannervik M, Nibu Y, Zhang H, Levine M.

Science. 1999 Apr 23;284(5414):606-9. Review.

PMID:
10213677
30.
31.

Solid-Liquid Phase Behavior of Binary Mixture of Tetraethylene Glycol Decyl Ether and Water.

Nibu Y, Inoue T.

J Colloid Interface Sci. 1998 Sep 15;205(2):231-240.

PMID:
9735186
32.

dCtBP mediates transcriptional repression by Knirps, Krüppel and Snail in the Drosophila embryo.

Nibu Y, Zhang H, Bajor E, Barolo S, Small S, Levine M.

EMBO J. 1998 Dec 1;17(23):7009-20.

33.

Interaction of short-range repressors with Drosophila CtBP in the embryo.

Nibu Y, Zhang H, Levine M.

Science. 1998 Apr 3;280(5360):101-4.

34.

Phase Behavior of Binary Mixture of Heptaethylene Glycol Decyl Ether and Water: Formation of Phase Compound in Solid Phase

Nibu Y, Suemori T, Inoue T.

J Colloid Interface Sci. 1997 Jul 1;191(1):256-63.

PMID:
9241226
35.

Human activin betaA gene. Identification of novel 5' exon, functional promoter, and enhancers.

Tanimoto K, Yoshida E, Mita S, Nibu Y, Murakami K, Fukamizu A.

J Biol Chem. 1996 Dec 20;271(51):32760-9.

37.
38.

Cloning of the rat angiotensin II type 2 receptor gene and identification of its functional promoter region.

Kobayashi S, Ohnishi J, Nibu Y, Nishimatsu S, Umemura S, Ishii M, Murakami K, Miyazaki H.

Biochim Biophys Acta. 1995 Jun 9;1262(2-3):155-8.

PMID:
7599191
39.

Purification and characterization of extracellular alginate lyase from Enterobacter cloacae M-1.

Nibu Y, Satoh T, Nishi Y, Takeuchi T, Murata K, Kusakabe I.

Biosci Biotechnol Biochem. 1995 Apr;59(4):632-7.

40.

A cell type-dependent enhancer core element is located in exon 5 of the human angiotensinogen gene.

Nibu Y, Tanimoto K, Takahashi S, Ono H, Murakami K, Fukamizu A.

Biochem Biophys Res Commun. 1994 Dec 15;205(2):1102-8.

PMID:
7802638
41.

Identification of cell type-dependent enhancer core element located in the 3'-downstream region of the human angiotensinogen gene.

Nibu Y, Takahashi S, Tanimoto K, Murakami K, Fukamizu A.

J Biol Chem. 1994 Nov 18;269(46):28598-605.

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