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Items: 44

1.

Highly structured homolog pairing reflects functional organization of the Drosophila genome.

AlHaj Abed J, Erceg J, Goloborodko A, Nguyen SC, McCole RB, Saylor W, Fudenberg G, Lajoie BR, Dekker J, Mirny LA, Wu CT.

Nat Commun. 2019 Oct 3;10(1):4485. doi: 10.1038/s41467-019-12208-3.

2.

The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos.

Erceg J, AlHaj Abed J, Goloborodko A, Lajoie BR, Fudenberg G, Abdennur N, Imakaev M, McCole RB, Nguyen SC, Saylor W, Joyce EF, Senaratne TN, Hannan MA, Nir G, Dekker J, Mirny LA, Wu CT.

Nat Commun. 2019 Oct 3;10(1):4486. doi: 10.1038/s41467-019-12211-8.

3.

H3K9me2 orchestrates inheritance of spatial positioning of peripheral heterochromatin through mitosis.

Poleshko A, Smith CL, Nguyen SC, Sivaramakrishnan P, Wong KG, Murray JI, Lakadamyali M, Joyce EF, Jain R, Epstein JA.

Elife. 2019 Oct 1;8. pii: e49278. doi: 10.7554/eLife.49278.

4.

Programmable Chromosome Painting with Oligopaints.

Nguyen SC, Joyce EF.

Methods Mol Biol. 2019;2038:167-180. doi: 10.1007/978-1-4939-9674-2_11.

PMID:
31407284
5.

Diversification and collapse of a telomere elongation mechanism.

Saint-Leandre B, Nguyen SC, Levine MT.

Genome Res. 2019 Jun;29(6):920-931. doi: 10.1101/gr.245001.118. Epub 2019 May 28.

PMID:
31138619
6.

A multiplexed DNA FISH strategy for assessing genome architecture in Caenorhabditis elegans.

Fields BD, Nguyen SC, Nir G, Kennedy S.

Elife. 2019 May 14;8. pii: e42823. doi: 10.7554/eLife.42823.

7.

Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques.

Petrovic J, Zhou Y, Fasolino M, Goldman N, Schwartz GW, Mumbach MR, Nguyen SC, Rome KS, Sela Y, Zapataro Z, Blacklow SC, Kruhlak MJ, Shi J, Aster JC, Joyce EF, Little SC, Vahedi G, Pear WS, Faryabi RB.

Mol Cell. 2019 Mar 21;73(6):1174-1190.e12. doi: 10.1016/j.molcel.2019.01.006. Epub 2019 Feb 7.

PMID:
30745086
8.

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.

Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, Sasaki HM, Lee SD, Nguyen SC, McCole RB, Chattoraj S, Erceg J, AlHaj Abed J, Martins NMC, Nguyen HQ, Hannan MA, Russell S, Durand NC, Rao SSP, Kishi JY, Soler-Vila P, Di Pierro M, Onuchic JN, Callahan SP, Schreiner JM, Stuckey JA, Yin P, Aiden EL, Marti-Renom MA, Wu CT.

PLoS Genet. 2018 Dec 26;14(12):e1007872. doi: 10.1371/journal.pgen.1007872. eCollection 2018 Dec.

9.

Targeted demethylation at the CDKN1C/p57 locus induces human β cell replication.

Ou K, Yu M, Moss NG, Wang YJ, Wang AW, Nguyen SC, Jiang C, Feleke E, Kameswaran V, Joyce EF, Naji A, Glaser B, Avrahami D, Kaestner KH.

J Clin Invest. 2019 Jan 2;129(1):209-214. doi: 10.1172/JCI99170. Epub 2018 Nov 26.

10.

Condensin II drives large-scale folding and spatial partitioning of interphase chromosomes in Drosophila nuclei.

Rosin LF, Nguyen SC, Joyce EF.

PLoS Genet. 2018 Jul 12;14(7):e1007393. doi: 10.1371/journal.pgen.1007393. eCollection 2018 Jul.

11.

OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes.

Beliveau BJ, Kishi JY, Nir G, Sasaki HM, Saka SK, Nguyen SC, Wu CT, Yin P.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2183-E2192. doi: 10.1073/pnas.1714530115. Epub 2018 Feb 20.

12.

Comparison of the Lupus Foundation of America-Rapid Evaluation of Activity in Lupus to More Complex Disease Activity Instruments As Evaluated by Clinical Investigators or Real-World Clinicians.

Askanase AD, Nguyen SC, Costenbader K, Lim SS, Kamen D, Aranow C, Grossman J, Kapoor TM, Baker-Frost D, Aberle T, Thanou-Stavraki A, Hanrahan LM, Kim M, Merrill JT.

Arthritis Care Res (Hoboken). 2018 Jul;70(7):1058-1063. doi: 10.1002/acr.23445. Epub 2018 May 21.

13.

Mechanism of ion adsorption to aqueous interfaces: Graphene/water vs. air/water.

McCaffrey DL, Nguyen SC, Cox SJ, Weller H, Alivisatos AP, Geissler PL, Saykally RJ.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13369-13373. doi: 10.1073/pnas.1702760114. Epub 2017 Aug 21.

14.

A Comparison of Photocatalytic Activities of Gold Nanoparticles Following Plasmonic and Interband Excitation and a Strategy for Harnessing Interband Hot Carriers for Solution Phase Photocatalysis.

Zhao J, Nguyen SC, Ye R, Ye B, Weller H, Somorjai GA, Alivisatos AP, Toste FD.

ACS Cent Sci. 2017 May 24;3(5):482-488. doi: 10.1021/acscentsci.7b00122. Epub 2017 May 15.

15.

Ligand Mediated Transformation of Cesium Lead Bromide Perovskite Nanocrystals to Lead Depleted Cs4PbBr6 Nanocrystals.

Liu Z, Bekenstein Y, Ye X, Nguyen SC, Swabeck J, Zhang D, Lee ST, Yang P, Ma W, Alivisatos AP.

J Am Chem Soc. 2017 Apr 19;139(15):5309-5312. doi: 10.1021/jacs.7b01409. Epub 2017 Apr 4.

16.

Characterizing Photon Reabsorption in Quantum Dot-Polymer Composites for Use as Displacement Sensors.

Koc MA, Raja SN, Hanson LA, Nguyen SC, Borys NJ, Powers AS, Wu S, Takano K, Swabeck JK, Olshansky JH, Lin L, Ritchie RO, Alivisatos AP.

ACS Nano. 2017 Feb 28;11(2):2075-2084. doi: 10.1021/acsnano.6b08277. Epub 2017 Jan 26.

17.

The Use of Graphene and Its Derivatives for Liquid-Phase Transmission Electron Microscopy of Radiation-Sensitive Specimens.

Cho H, Jones MR, Nguyen SC, Hauwiller MR, Zettl A, Alivisatos AP.

Nano Lett. 2017 Jan 11;17(1):414-420. doi: 10.1021/acs.nanolett.6b04383. Epub 2016 Dec 28.

18.

An Unexpected Regulatory Cascade Governs a Core Function of the Drosophila PRC1 Chromatin Protein Su(z)2.

Nguyen SC, Yu S, Oberlick E, Wu CT.

Genetics. 2017 Feb;205(2):551-558. doi: 10.1534/genetics.116.187849. Epub 2016 Nov 23.

19.

Association of Muscle Weakness With Post-Fracture Mortality in Older Men and Women: A 25-Year Prospective Study.

Pham HM, Nguyen SC, Ho-Le TP, Center JR, Eisman JA, Nguyen TV.

J Bone Miner Res. 2017 Apr;32(4):698-707. doi: 10.1002/jbmr.3037. Epub 2017 Mar 1.

20.

Single-particle mapping of nonequilibrium nanocrystal transformations.

Ye X, Jones MR, Frechette LB, Chen Q, Powers AS, Ercius P, Dunn G, Rotskoff GM, Nguyen SC, Adiga VP, Zettl A, Rabani E, Geissler PL, Alivisatos AP.

Science. 2016 Nov 18;354(6314):874-877.

21.

Spectroscopic elucidation of energy transfer in hybrid inorganic-biological organisms for solar-to-chemical production.

Kornienko N, Sakimoto KK, Herlihy DM, Nguyen SC, Alivisatos AP, Harris CB, Schwartzberg A, Yang P.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):11750-11755. Epub 2016 Oct 3.

22.

Investigating the Interplay between Sister Chromatid Cohesion and Homolog Pairing in Drosophila Nuclei.

Senaratne TN, Joyce EF, Nguyen SC, Wu CT.

PLoS Genet. 2016 Aug 19;12(8):e1006169. doi: 10.1371/journal.pgen.1006169. eCollection 2016 Aug.

23.

Targeted B cell therapies in the treatment of adult and pediatric systemic lupus erythematosus.

Hui-Yuen JS, Nguyen SC, Askanase AD.

Lupus. 2016 Sep;25(10):1086-96. doi: 10.1177/0961203316652491. Review.

PMID:
27497253
24.

Study of Heat Transfer Dynamics from Gold Nanorods to the Environment via Time-Resolved Infrared Spectroscopy.

Nguyen SC, Zhang Q, Manthiram K, Ye X, Lomont JP, Harris CB, Weller H, Alivisatos AP.

ACS Nano. 2016 Feb 23;10(2):2144-51. doi: 10.1021/acsnano.5b06623. Epub 2016 Feb 8.

25.

Studying the Dynamics of Photochemical Reactions via Ultrafast Time-Resolved Infrared Spectroscopy of the Local Solvent.

Nguyen SC, Lomont JP, Caplins BW, Harris CB.

J Phys Chem Lett. 2014 Sep 4;5(17):2974-8. doi: 10.1021/jz501400t. Epub 2014 Aug 19.

PMID:
26278245
26.

Electron Dynamics and IR Peak Coalescence in Bridged Mixed Valence Dimers Studied by Ultrafast 2D-IR Spectroscopy.

Zoerb MC, Henderson JS, Glover SD, Lomont JP, Nguyen SC, Hill AD, Kubiak CP, Harris CB.

J Phys Chem B. 2015 Aug 20;119(33):10738-49. doi: 10.1021/acs.jpcb.5b06734. Epub 2015 Aug 5.

PMID:
26204239
27.

Silica-Supported Cationic Gold(I) Complexes as Heterogeneous Catalysts for Regio- and Enantioselective Lactonization Reactions.

Shu XZ, Nguyen SC, He Y, Oba F, Zhang Q, Canlas C, Somorjai GA, Alivisatos AP, Toste FD.

J Am Chem Soc. 2015 Jun 10;137(22):7083-6. doi: 10.1021/jacs.5b04294. Epub 2015 May 29.

28.

Contributions of Caucasian-associated bone mass loci to the variation in bone mineral density in Vietnamese population.

Ho-Pham LT, Nguyen SC, Tran B, Nguyen TV.

Bone. 2015 Jul;76:18-22. doi: 10.1016/j.bone.2015.03.003. Epub 2015 Mar 11.

PMID:
25771420
29.

Vibrational cooling dynamics of a [FeFe]-hydrogenase mimic probed by time-resolved infrared spectroscopy.

Caplins BW, Lomont JP, Nguyen SC, Harris CB.

J Phys Chem A. 2014 Dec 11;118(49):11529-40. doi: 10.1021/jp510517z. Epub 2014 Nov 26.

PMID:
25426927
30.

Exploring the potential of fulvalene dimetals as platforms for molecular solar thermal energy storage: computations, syntheses, structures, kinetics, and catalysis.

Börjesson K, Ćoso D, Gray V, Grossman JC, Guan J, Harris CB, Hertkorn N, Hou Z, Kanai Y, Lee D, Lomont JP, Majumdar A, Meier SK, Moth-Poulsen K, Myrabo RL, Nguyen SC, Segalman RA, Srinivasan V, Tolman WB, Vinokurov N, Vollhardt KP, Weidman TW.

Chemistry. 2014 Nov 17;20(47):15587-604. doi: 10.1002/chem.201404170. Epub 2014 Oct 3.

PMID:
25284044
31.

Ultrafast infrared studies of the role of spin states in organometallic reaction dynamics.

Lomont JP, Nguyen SC, Harris CB.

Acc Chem Res. 2014 May 20;47(5):1634-42. doi: 10.1021/ar500032d. Epub 2014 May 12.

PMID:
24819619
32.

Determining equilibrium fluctuations using temperature-dependent 2D-IR.

Hill AD, Zoerb MC, Nguyen SC, Lomont JP, Bowring MA, Harris CB.

J Phys Chem B. 2013 Dec 12;117(49):15346-55. doi: 10.1021/jp403791k. Epub 2013 Aug 1.

PMID:
23844833
33.

Reactivity of TEMPO toward 16- and 17-electron organometallic reaction intermediates: a time-resolved IR study.

Lomont JP, Nguyen SC, Harris CB.

J Am Chem Soc. 2013 Jul 31;135(30):11266-73. doi: 10.1021/ja404476m. Epub 2013 Jul 16.

PMID:
23819559
34.

Insights into the photochemical disproportionation of transition metal dimers on the picosecond time scale.

Lomont JP, Nguyen SC, Harris CB.

J Phys Chem A. 2013 May 9;117(18):3777-85. doi: 10.1021/jp4021036. Epub 2013 Apr 26.

PMID:
23586784
35.

Switching from Ru to Fe: picosecond IR spectroscopic investigation of the potential of the (fulvalene)tetracarbonyldiiron frame for molecular solar-thermal storage.

Hou Z, Nguyen SC, Lomont JP, Harris CB, Vinokurov N, Vollhardt KP.

Phys Chem Chem Phys. 2013 May 28;15(20):7466-9. doi: 10.1039/c3cp51292d. Epub 2013 Apr 12.

PMID:
23584459
36.

Direct observation of a bent carbonyl ligand in a 19-electron transition metal complex.

Lomont JP, Nguyen SC, Harris CB.

J Phys Chem A. 2013 Mar 21;117(11):2317-24. doi: 10.1021/jp311732t. Epub 2013 Mar 12.

PMID:
23448247
37.

X-ray transient absorption and picosecond IR spectroscopy of fulvalene(tetracarbonyl)diruthenium on photoexcitation.

Harpham MR, Nguyen SC, Hou Z, Grossman JC, Harris CB, Mara MW, Stickrath AB, Kanai Y, Kolpak AM, Lee D, Liu DJ, Lomont JP, Moth-Poulsen K, Vinokurov N, Chen LX, Vollhardt KP.

Angew Chem Int Ed Engl. 2012 Jul 27;51(31):7692-6. doi: 10.1002/anie.201202952. Epub 2012 Jun 27.

PMID:
22740313
38.

Ultrafast observation of a solvent dependent spin state equilibrium in CpCo(CO).

Lomont JP, Nguyen SC, Schlegel JP, Zoerb MC, Hill AD, Harris CB.

J Am Chem Soc. 2012 Feb 15;134(6):3120-6. doi: 10.1021/ja2098468. Epub 2012 Jan 30.

PMID:
22239646
39.

A human cell-based reporter detects microhomology-mediated end joining.

Liu Y, Deng L, Nguyen SC, Au CL, Shao C, Tischfield JA, Liang L.

Mutat Res. 2012 Mar 1;731(1-2):140-4. doi: 10.1016/j.mrfmmm.2011.12.003. Epub 2011 Dec 14.

40.

Attention to baseline: does orienting visuospatial attention really facilitate target detection?

Albares M, Criaud M, Wardak C, Nguyen SC, Ben Hamed S, Boulinguez P.

J Neurophysiol. 2011 Aug;106(2):809-16. doi: 10.1152/jn.00206.2011. Epub 2011 May 25.

41.

Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.

Duncan EL, Danoy P, Kemp JP, Leo PJ, McCloskey E, Nicholson GC, Eastell R, Prince RL, Eisman JA, Jones G, Sambrook PN, Reid IR, Dennison EM, Wark J, Richards JB, Uitterlinden AG, Spector TD, Esapa C, Cox RD, Brown SD, Thakker RV, Addison KA, Bradbury LA, Center JR, Cooper C, Cremin C, Estrada K, Felsenberg D, Glüer CC, Hadler J, Henry MJ, Hofman A, Kotowicz MA, Makovey J, Nguyen SC, Nguyen TV, Pasco JA, Pryce K, Reid DM, Rivadeneira F, Roux C, Stefansson K, Styrkarsdottir U, Thorleifsson G, Tichawangana R, Evans DM, Brown MA.

PLoS Genet. 2011 Apr;7(4):e1001372. doi: 10.1371/journal.pgen.1001372. Epub 2011 Apr 21.

42.

A computational study of lithium ketone enolate aggregation in the gas phase and in THF solution.

Pratt LM, Nguyen SC, Bui TT.

J Org Chem. 2008 Aug 15;73(16):6086-91. doi: 10.1021/jo800528y. Epub 2008 Jul 23.

PMID:
18646860
43.

Human DNA ligases I and III, but not ligase IV, are required for microhomology-mediated end joining of DNA double-strand breaks.

Liang L, Deng L, Nguyen SC, Zhao X, Maulion CD, Shao C, Tischfield JA.

Nucleic Acids Res. 2008 Jun;36(10):3297-310. doi: 10.1093/nar/gkn184. Epub 2008 Apr 24.

44.

Reduced apoptosis and increased deletion mutations at Aprt locus in vivo in mice exposed to repeated ionizing radiation.

Liang L, Mendonca MS, Deng L, Nguyen SC, Shao C, Tischfield JA.

Cancer Res. 2007 Mar 1;67(5):1910-7.

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