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ascend: R package for analysis of single-cell RNA-seq data.

Senabouth A, Lukowski SW, Hernandez JA, Andersen SB, Mei X, Nguyen QH, Powell JE.

Gigascience. 2019 Aug 1;8(8). pii: giz087. doi: 10.1093/gigascience/giz087.


Predicting the onset of type 2 diabetes using wide and deep learning with electronic health records.

Nguyen BP, Pham HN, Tran H, Nghiem N, Nguyen QH, Do TTT, Tran CT, Simpson CR.

Comput Methods Programs Biomed. 2019 Aug 27;182:105055. doi: 10.1016/j.cmpb.2019.105055. [Epub ahead of print]


Enhanced Cycle Stability of Zinc Sulfide Anode for High-Performance Lithium-Ion Storage: Effect of Conductive Hybrid Matrix on Active ZnS.

Nguyen QH, Park T, Hur J.

Nanomaterials (Basel). 2019 Aug 29;9(9). pii: E1221. doi: 10.3390/nano9091221.


Effectiveness of Combined External Ventricular Drainage with Intraventricular Fibrinolysis for the Treatment of Intraventricular Haemorrhage with Acute Obstructive Hydrocephalus.

Luong CQ, Nguyen AD, Nguyen CV, Mai TD, Nguyen TA, Do SN, Dao PV, Pham HTM, Pham DT, Ngo HM, Nguyen QH, Nguyen DT, Tran TH, Le KV, Do NT, Ngo ND, Nguyen VD, Ngo HD, Hoang HB, Vu HV, Vu LT, Ngo BT, Nguyen BX, Khuong DQ, Nguyen DT, Vuong TX, Be TH, Gaberel T, Nguyen LV.

Cerebrovasc Dis Extra. 2019 Aug 13;9(2):77-89. doi: 10.1159/000501530. [Epub ahead of print]


Endophytic actinomycetes associated with Cinnamomum cassia Presl in Hoa Binh province, Vietnam: Distribution, antimicrobial activity and, genetic features.

Vu THN, Nguyen QH, Dinh TML, Quach NT, Khieu TN, Hoang H, Son CK, Vu TT, Chu HH, Lee J, Kang H, Li WJ, Phi QT.

J Gen Appl Microbiol. 2019 Aug 2. doi: 10.2323/jgam.2019.04.004. [Epub ahead of print]


Results from the United States cohort of the HORIZON trial of a Schlemm canal microstent to reduce intraocular pressure in primary open-angle glaucoma.

Jones J, Koch DD, Vold S, McCabe C, Rhee D, Lewis R, Smith S, Nguyen QH, Samuelson TW; HORIZON U.S. investigators.

J Cataract Refract Surg. 2019 Sep;45(9):1305-1315. doi: 10.1016/j.jcrs.2019.03.024. Epub 2019 Jul 17.


High Lithium Ion Transport Through rGO-Wrapped LiNi0.6Co0.2Mn0.2O2 Cathode Material for High-Rate Capable Lithium Ion Batteries.

Ahn W, Seo MH, Pham TK, Nguyen QH, Luu VT, Cho Y, Lee YW, Cho N, Jeong SK.

Front Chem. 2019 May 28;7:361. doi: 10.3389/fchem.2019.00361. eCollection 2019.


Does conventional freezing affect sperm DNA fragmentation?

Le MT, Nguyen TTT, Nguyen TT, Nguyen TV, Nguyen TAT, Nguyen QHV, Cao TN.

Clin Exp Reprod Med. 2019 Jun;46(2):67-75. doi: 10.5653/cerm.2019.46.2.67. Epub 2019 Jun 1.


Upregulation of endogenous thrombopoietin receptor (MPL) with in vivo passage of calreticulin (CALR) mutant Ba/F3 cells, highlighting MPL as the requisite cytokine receptor for CALR mediated transformation.

Brooks SA, Kim DM, Morse SJ, Nguyen QH, Craver BM, Lai HY, Fleischman AG.

Leuk Res. 2019 Jul;82:11-14. doi: 10.1016/j.leukres.2019.05.003. Epub 2019 May 9. No abstract available.


Synthesis of vicinal dideoxy-difluorinated galactoses.

Malassis J, Vendeville JB, Nguyen QH, Boujon M, Gaignard-Gaillard Q, Light M, Linclau B.

Org Biomol Chem. 2019 May 29;17(21):5331-5340. doi: 10.1039/c9ob00707e.


Functional Nanostructured Oligochitosan⁻Silica/ Carboxymethyl Cellulose Hybrid Materials: Synthesis and Investigation of Their Antifungal Abilities.

Nguyen TN, Huynh TN, Hoang D, Nguyen DH, Nguyen QH, Tran TH.

Polymers (Basel). 2019 Apr 4;11(4). pii: E628. doi: 10.3390/polym11040628.


Depletion of murine fetal hematopoietic stem cells with c-Kit receptor and CD47 blockade improves neonatal engraftment.

Witt RG, Wang B, Nguyen QH, Eikani C, Mattis AN, MacKenzie TC.

Blood Adv. 2018 Dec 26;2(24):3602-3607. doi: 10.1182/bloodadvances.2018022020. No abstract available.


MoS₂-TiC-C Nanocomposites as New Anode Materials for High-Performance Lithium-Ion Batteries.

Nguyen QH, Hur J.

J Nanosci Nanotechnol. 2019 Feb 1;19(2):996-1000. doi: 10.1166/jnn.2019.15953.


Insights into the processes that drive the evolution of drug resistance in Mycobacterium tuberculosis.

Nguyen QH, Contamin L, Nguyen TVA, Bañuls AL.

Evol Appl. 2018 Jun 21;11(9):1498-1511. doi: 10.1111/eva.12654. eCollection 2018 Oct. Review.


Experimental Considerations for Single-Cell RNA Sequencing Approaches.

Nguyen QH, Pervolarakis N, Nee K, Kessenbrock K.

Front Cell Dev Biol. 2018 Sep 4;6:108. doi: 10.3389/fcell.2018.00108. eCollection 2018. Review.


Potential to mitigate ammonia emission from slurry by increasing dietary fermentable fiber through inclusion of tropical byproducts in practical diets for growing pigs.

Nguyen QH, Le PD, Chim C, Le ND, Fievez V.

Asian-Australas J Anim Sci. 2019 Apr;32(4):574-584. doi: 10.5713/ajas.18.0481. Epub 2018 Sep 13.


Molecular epidemiology analysis of enterovirus 71 strains isolated in Dak Lak, Vietnam, 2011-2016.

Le TV, Nguyen VTT, Nguyen QH, Pham DT.

J Med Virol. 2019 Jan;91(1):56-64. doi: 10.1002/jmv.25286. Epub 2018 Sep 24.


Detection of HPV E7 Transcription at Single-Cell Resolution in Epidermis.

Lukowski SW, Tuong ZK, Noske K, Senabouth A, Nguyen QH, Andersen SB, Soyer HP, Frazer IH, Powell JE.

J Invest Dermatol. 2018 Dec;138(12):2558-2567. doi: 10.1016/j.jid.2018.06.169. Epub 2018 Jun 30.


Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity.

Nguyen QH, Pervolarakis N, Blake K, Ma D, Davis RT, James N, Phung AT, Willey E, Kumar R, Jabart E, Driver I, Rock J, Goga A, Khan SA, Lawson DA, Werb Z, Kessenbrock K.

Nat Commun. 2018 May 23;9(1):2028. doi: 10.1038/s41467-018-04334-1.


Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations.

Nguyen QH, Lukowski SW, Chiu HS, Senabouth A, Bruxner TJC, Christ AN, Palpant NJ, Powell JE.

Genome Res. 2018 Jul;28(7):1053-1066. doi: 10.1101/gr.223925.117. Epub 2018 May 11.


Transparent Nanopore Cavity Arrays Enable Highly Parallelized Optical Studies of Single Membrane Proteins on Chip.

Diederichs T, Nguyen QH, Urban M, Tampé R, Tornow M.

Nano Lett. 2018 Jun 13;18(6):3901-3910. doi: 10.1021/acs.nanolett.8b01252. Epub 2018 May 14.


Targeting the Mevalonate Pathway Suppresses VHL-Deficient CC-RCC through an HIF-Dependent Mechanism.

Thompson JM, Alvarez A, Singha MK, Pavesic MW, Nguyen QH, Nelson LJ, Fruman DA, Razorenova OV.

Mol Cancer Ther. 2018 Aug;17(8):1781-1792. doi: 10.1158/1535-7163.MCT-17-1076. Epub 2018 May 2.


Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data.

Nguyen QH, Tellam RL, Naval-Sanchez M, Porto-Neto LR, Barendse W, Reverter A, Hayes B, Kijas J, Dalrymple BP.

Gigascience. 2018 Mar 1;7(3):1-17. doi: 10.1093/gigascience/gix136.


Single cell RNA sequencing of stem cell-derived retinal ganglion cells.

Daniszewski M, Senabouth A, Nguyen QH, Crombie DE, Lukowski SW, Kulkarni T, Sluch VM, Jabbari JS, Chamling X, Zack DJ, Pébay A, Powell JE, Hewitt AW.

Sci Data. 2018 Feb 13;5:180013. doi: 10.1038/sdata.2018.13.


Two new species of Oreocharis (Gesneriaceae) from Fan Si Pan, the highest mountain in Vietnam.

Chen WH, Nguyen QH, Chen RZ, Nguyen TH, Nguyen SK, Nguyen VT, Möller M, Middleton DJ, Shui YM.

PhytoKeys. 2018 Jan 29;(94):95-106. doi: 10.3897/phytokeys.94.21329. eCollection 2018.


Proxy Graph: Visual Quality Metrics of Big Graph Sampling.

Nguyen QH, Hong SH, Eades P, Meidiana A.

IEEE Trans Vis Comput Graph. 2017 Jun;23(6):1600-1611. doi: 10.1109/TVCG.2017.2674999. Epub 2017 Feb 24.


Brønsted Acid Catalyzed Oxygenative Bimolecular Friedel-Crafts-type Coupling of Ynamides.

Patil DV, Kim SW, Nguyen QH, Kim H, Wang S, Hoang T, Shin S.

Angew Chem Int Ed Engl. 2017 Mar 20;56(13):3670-3674. doi: 10.1002/anie.201612471. Epub 2017 Feb 23.


Rho-associated kinase 1 inhibition is synthetically lethal with von Hippel-Lindau deficiency in clear cell renal cell carcinoma.

Thompson JM, Nguyen QH, Singh M, Pavesic MW, Nesterenko I, Nelson LJ, Liao AC, Razorenova OV.

Oncogene. 2017 Feb 23;36(8):1080-1089. doi: 10.1038/onc.2016.272. Epub 2016 Nov 14.


Correlates of HIV Testing Among Transgender Women in Ho Chi Minh, Vietnam.

Bao A, Colby DJ, Trang T, Le BQ, Dinh TD, Nguyen QH, Hoang HT, Friedman MR, Stall R.

AIDS Behav. 2016 Dec;20(Suppl 3):371-378.


Effect of oligochitosan and oligo-β-glucan supplementation on growth, innate immunity, and disease resistance of striped catfish (Pangasianodon hypophthalmus).

Nguyen ND, Van Dang P, Le AQ, Nguyen TKL, Pham DH, Van Nguyen N, Nguyen QH.

Biotechnol Appl Biochem. 2017 Jul;64(4):564-571. doi: 10.1002/bab.1513. Epub 2017 Apr 3.


A Group-Based Sexual Risk Reduction Intervention for Men Who Have Sex With Men in Ho Chi Minh City, Vietnam: Feasibility, Acceptability, and Preliminary Efficacy.

Mimiaga MJ, Closson EF, Biello KB, Nguyen H, Nguyen QH, Oldenburg CE, Lan HT, Safren SA, Mayer KH, Colby DJ.

Arch Sex Behav. 2016 Aug;45(6):1493-500. doi: 10.1007/s10508-015-0663-5. Epub 2015 Dec 31.


Transport properties of track-etched membranes having variable effective pore-lengths.

Nguyen QH, Ali M, Nasir S, Ensinger W.

Nanotechnology. 2015 Dec 4;26(48):485502. doi: 10.1088/0957-4484/26/48/485502. Epub 2015 Nov 10.


Approaches to identifying synthetic lethal interactions in cancer.

Thompson JM, Nguyen QH, Singh M, Razorenova OV.

Yale J Biol Med. 2015 Jun 1;88(2):145-55. eCollection 2015 Jun. Review.


Current rectification by nanoparticle blocking in single cylindrical nanopores.

Ali M, Ramirez P, Nasir S, Nguyen QH, Ensinger W, Mafe S.

Nanoscale. 2014 Sep 21;6(18):10740-5. doi: 10.1039/c4nr02968b. Epub 2014 Aug 6.


Combination of brinzolamide and brimonidine for glaucoma and ocular hypertension: critical appraisal and patient focus.

Nguyen QH.

Patient Prefer Adherence. 2014 Jun 12;8:853-64. doi: 10.2147/PPA.S53162. eCollection 2014. Review.


Effectiveness of intraocular pressure-lowering medication determined by washout.

Jampel HD, Chon BH, Stamper R, Packer M, Han Y, Nguyen QH, Ianchulev T.

JAMA Ophthalmol. 2014 Apr 1;132(4):390-5. doi: 10.1001/jamaophthalmol.2013.7677.


Early postoperative safety and surgical outcomes after implantation of a suprachoroidal micro-stent for the treatment of open-angle glaucoma concomitant with cataract surgery.

Hoeh H, Ahmed II, Grisanti S, Grisanti S, Grabner G, Nguyen QH, Rau M, Yoo S, Ianchulev T.

J Cataract Refract Surg. 2013 Mar;39(3):431-7. doi: 10.1016/j.jcrs.2012.10.040.


Phase 3 randomized 3-month trial with an ongoing 3-month safety extension of fixed-combination brinzolamide 1%/brimonidine 0.2%.

Nguyen QH, McMenemy MG, Realini T, Whitson JT, Goode SM.

J Ocul Pharmacol Ther. 2013 Apr;29(3):290-7. doi: 10.1089/jop.2012.0235. Epub 2013 Feb 20.


Measurement of MMP-9 and -12 degraded elastin (ELM) provides unique information on lung tissue degradation.

Skjøt-Arkil H, Clausen RE, Nguyen QH, Wang Y, Zheng Q, Martinez FJ, Hogaboam CM, Han M, Klickstein LB, Larsen MR, Nawrocki A, Leeming DJ, Karsdal MA.

BMC Pulm Med. 2012 Jul 20;12:34. doi: 10.1186/1471-2466-12-34.


Unnecessary antibiotic use for mild acute respiratory infections during 28-day follow-up of 823 children under five in rural Vietnam.

Nguyen QH, Nguyen TK, Ho D, Larsson M, Eriksson B, Lundborg CS.

Trans R Soc Trop Med Hyg. 2011 Nov;105(11):628-36. doi: 10.1016/j.trstmh.2011.07.015. Epub 2011 Sep 29.


MMP mediated degradation of type VI collagen is highly associated with liver fibrosis--identification and validation of a novel biochemical marker assay.

Veidal SS, Karsdal MA, Vassiliadis E, Nawrocki A, Larsen MR, Nguyen QH, Hägglund P, Luo Y, Zheng Q, Vainer B, Leeming DJ.

PLoS One. 2011;6(9):e24753. doi: 10.1371/journal.pone.0024753. Epub 2011 Sep 14.


Metal ion affinity-based biomolecular recognition and conjugation inside synthetic polymer nanopores modified with iron-terpyridine complexes.

Ali M, Nasir S, Nguyen QH, Sahoo JK, Tahir MN, Tremel W, Ensinger W.

J Am Chem Soc. 2011 Nov 2;133(43):17307-14. doi: 10.1021/ja205042t. Epub 2011 Oct 10.


[Penicilliosis in Vietnam: a series of 94 patients].

Vu Hai V, Ngo AT, Ngo VH, Nguyen QH, Massip P, Delmont J, Strobel M, Buisson Y.

Rev Med Interne. 2010 Dec;31(12):812-8. doi: 10.1016/j.revmed.2010.07.019. French. Erratum in: Rev Med Interne. 2011 Feb;32(2):137.


ATP-modulated ionic transport through synthetic nanochannels.

Ali M, Nguyen QH, Neumann R, Ensinger W.

Chem Commun (Camb). 2010 Sep 28;46(36):6690-2. doi: 10.1039/c0cc01632b. Epub 2010 Aug 25.


Charge-selective transport of organic and protein analytes through synthetic nanochannels.

Nguyen QH, Ali M, Bayer V, Neumann R, Ensinger W.

Nanotechnology. 2010 Sep 10;21(36):365701. doi: 10.1088/0957-4484/21/36/365701. Epub 2010 Aug 11.


Estrogen rapidly attenuates cannabinoid-induced changes in energy homeostasis.

Kellert BA, Nguyen MC, Nguyen C, Nguyen QH, Wagner EJ.

Eur J Pharmacol. 2009 Nov 10;622(1-3):15-24. doi: 10.1016/j.ejphar.2009.09.001. Epub 2009 Sep 14.

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