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Items: 32

1.

NetPyNE, a tool for data-driven multiscale modeling of brain circuits.

Dura-Bernal S, Suter BA, Gleeson P, Cantarelli M, Quintana A, Rodriguez F, Kedziora DJ, Chadderdon GL, Kerr CC, Neymotin SA, McDougal RA, Hines M, Shepherd GM, Lytton WW.

Elife. 2019 Apr 26;8. pii: e44494. doi: 10.7554/eLife.44494.

2.

Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.

Dura-Bernal S, Neymotin SA, Kerr CC, Sivagnanam S, Majumdar A, Francis JT, Lytton WW.

IBM J Res Dev. 2017 Mar-May;61(2-3):6.1-6.14. doi: 10.1147/JRD.2017.2656758. Epub 2017 May 23.

3.

Tau and amyloid-related pathologies in the entorhinal cortex have divergent effects in the hippocampal circuit.

Angulo SL, Orman R, Neymotin SA, Liu L, Buitrago L, Cepeda-Prado E, Stefanov D, Lytton WW, Stewart M, Small SA, Duff KE, Moreno H.

Neurobiol Dis. 2017 Dec;108:261-276. doi: 10.1016/j.nbd.2017.08.015. Epub 2017 Aug 30.

PMID:
28860088
4.

Global dynamics of selective attention and its lapses in primary auditory cortex.

Lakatos P, Barczak A, Neymotin SA, McGinnis T, Ross D, Javitt DC, O'Connell MN.

Nat Neurosci. 2016 Dec;19(12):1707-1717. doi: 10.1038/nn.4386. Epub 2016 Sep 12.

5.

Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.

Neymotin SA, Suter BA, Dura-Bernal S, Shepherd GM, Migliore M, Lytton WW.

J Neurophysiol. 2017 Jan 1;117(1):148-162. doi: 10.1152/jn.00570.2016. Epub 2016 Oct 19.

6.

Tracking recurrence of correlation structure in neuronal recordings.

Neymotin SA, Talbot ZN, Jung JQ, Fenton AA, Lytton WW.

J Neurosci Methods. 2017 Jan 1;275:1-9. doi: 10.1016/j.jneumeth.2016.10.009. Epub 2016 Oct 13.

7.

Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex.

Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW.

Front Pharmacol. 2016 Jun 14;7:157. doi: 10.3389/fphar.2016.00157. eCollection 2016.

8.

Computer modeling for pharmacological treatments for dystonia.

Neymotin SA, Dura-Bernal S, Moreno H, Lytton WW.

Drug Discov Today Dis Models. 2016 Spring;19:51-57. doi: 10.1016/j.ddmod.2017.02.003. Epub 2017 Mar 31.

9.

Restoring Behavior via Inverse Neurocontroller in a Lesioned Cortical Spiking Model Driving a Virtual Arm.

Dura-Bernal S, Li K, Neymotin SA, Francis JT, Principe JC, Lytton WW.

Front Neurosci. 2016 Feb 9;10:28. doi: 10.3389/fnins.2016.00028. eCollection 2016.

10.

Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex.

Neymotin SA, McDougal RA, Bulanova AS, Zeki M, Lakatos P, Terman D, Hines ML, Lytton WW.

Neuroscience. 2016 Mar 1;316:344-66. doi: 10.1016/j.neuroscience.2015.12.043. Epub 2015 Dec 31.

11.

Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm.

Dura-Bernal S, Zhou X, Neymotin SA, Przekwas A, Francis JT, Lytton WW.

Front Neurorobot. 2015 Nov 25;9:13. doi: 10.3389/fnbot.2015.00013. eCollection 2015.

12.

Impaired dendritic inhibition leads to epileptic activity in a computer model of CA3.

Sanjay M, Neymotin SA, Krothapalli SB.

Hippocampus. 2015 Nov;25(11):1336-50. doi: 10.1002/hipo.22440. Epub 2015 Apr 22.

PMID:
25864919
13.

Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.

Neymotin SA, McDougal RA, Sherif MA, Fall CP, Hines ML, Lytton WW.

Neural Comput. 2015 Apr;27(4):898-924. doi: 10.1162/NECO_a_00712. Epub 2015 Mar 3.

14.

Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease.

Rowan MS, Neymotin SA, Lytton WW.

Front Comput Neurosci. 2014 Apr 3;8:39. doi: 10.3389/fncom.2014.00039. eCollection 2014.

15.

Motor cortex microcircuit simulation based on brain activity mapping.

Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GM, Lytton WW.

Neural Comput. 2014 Jul;26(7):1239-62. doi: 10.1162/NECO_a_00602. Epub 2014 Apr 7.

16.

Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity.

Eguchi A, Neymotin SA, Stringer SM.

Front Neural Circuits. 2014 Mar 12;8:16. doi: 10.3389/fncir.2014.00016. eCollection 2014.

17.

Modeling molecular pathways of neuronal ischemia.

Taxin ZH, Neymotin SA, Mohan A, Lipton P, Lytton WW.

Prog Mol Biol Transl Sci. 2014;123:249-75. doi: 10.1016/B978-0-12-397897-4.00014-0. Review.

18.

Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm.

Dura-Bernal S, Chadderdon GL, Neymotin SA, Francis JT, Lytton WW.

Pattern Recognit Lett. 2014 Jan 15;36:204-212.

19.

Multiscale modeling for clinical translation in neuropsychiatric disease.

Lytton WW, Neymotin SA, Kerr CC.

J Comput Surg. 2014;1. pii: 7. Epub 2014 Mar 3.

20.

Ih tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model.

Neymotin SA, Hilscher MM, Moulin TC, Skolnick Y, Lazarewicz MT, Lytton WW.

PLoS One. 2013 Oct 18;8(10):e76285. doi: 10.1371/journal.pone.0076285. eCollection 2013. Erratum in: PLoS One. 2013;8(12). doi:10.1371/annotation/00ea7ef3-aafd-4675-a3cc-c5087816b4d6.

21.

Reinforcement learning of two-joint virtual arm reaching in a computer model of sensorimotor cortex.

Neymotin SA, Chadderdon GL, Kerr CC, Francis JT, Lytton WW.

Neural Comput. 2013 Dec;25(12):3263-93. doi: 10.1162/NECO_a_00521. Epub 2013 Sep 18.

22.

Cortical information flow in Parkinson's disease: a composite network/field model.

Kerr CC, Van Albada SJ, Neymotin SA, Chadderdon GL, Robinson PA, Lytton WW.

Front Comput Neurosci. 2013 Apr 25;7:39. doi: 10.3389/fncom.2013.00039. eCollection 2013.

23.

Reinforcement learning of targeted movement in a spiking neuronal model of motor cortex.

Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW.

PLoS One. 2012;7(10):e47251. doi: 10.1371/journal.pone.0047251. Epub 2012 Oct 19. Erratum in: PLoS One. 2013;8(4). doi: 10.1371/annotation/f6185650-eb8d-430b-9410-d079c56cef7f.

24.

Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex.

Kerr CC, Neymotin SA, Chadderdon GL, Fietkiewicz CT, Francis JT, Lytton WW.

IEEE Trans Neural Syst Rehabil Eng. 2012 Mar;20(2):153-60. doi: 10.1109/TNSRE.2011.2178614. Epub 2011 Dec 13.

PMID:
22180517
25.

Measuring the quality of neuronal identification in ensemble recordings.

Neymotin SA, Lytton WW, Olypher AV, Fenton AA.

J Neurosci. 2011 Nov 9;31(45):16398-409. doi: 10.1523/JNEUROSCI.4053-11.2011.

26.

Ketamine disrupts θ modulation of γ in a computer model of hippocampus.

Neymotin SA, Lazarewicz MT, Sherif M, Contreras D, Finkel LH, Lytton WW.

J Neurosci. 2011 Aug 10;31(32):11733-43. doi: 10.1523/JNEUROSCI.0501-11.2011.

27.

Emergence of physiological oscillation frequencies in a computer model of neocortex.

Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW.

Front Comput Neurosci. 2011 Apr 19;5:19. doi: 10.3389/fncom.2011.00019. eCollection 2011.

28.

Interictal EEG discoordination in a rat seizure model.

Neymotin SA, Lee H, Fenton AA, Lytton WW.

J Clin Neurophysiol. 2010 Dec;27(6):438-44. doi: 10.1097/WNP.0b013e3181fe059e.

PMID:
21076325
29.

Synaptic information transfer in computer models of neocortical columns.

Neymotin SA, Jacobs KM, Fenton AA, Lytton WW.

J Comput Neurosci. 2011 Feb;30(1):69-84. doi: 10.1007/s10827-010-0253-4. Epub 2010 Jun 17.

30.

Unmasking the CA1 ensemble place code by exposures to small and large environments: more place cells and multiple, irregularly arranged, and expanded place fields in the larger space.

Fenton AA, Kao HY, Neymotin SA, Olypher A, Vayntrub Y, Lytton WW, Ludvig N.

J Neurosci. 2008 Oct 29;28(44):11250-62. doi: 10.1523/JNEUROSCI.2862-08.2008.

31.

Just-in-time connectivity for large spiking networks.

Lytton WW, Omurtag A, Neymotin SA, Hines ML.

Neural Comput. 2008 Nov;20(11):2745-56. doi: 10.1162/neco.2008.10-07-622.

32.

The virtual slice setup.

Lytton WW, Neymotin SA, Hines ML.

J Neurosci Methods. 2008 Jun 30;171(2):309-15. doi: 10.1016/j.jneumeth.2008.03.005. Epub 2008 Mar 27.

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