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Items: 1 to 50 of 93

1.

Fecal source identification using random forest.

Roguet A, Eren AM, Newton RJ, McLellan SL.

Microbiome. 2018 Oct 18;6(1):185. doi: 10.1186/s40168-018-0568-3.

2.

TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.

Rohwer RR, Hamilton JJ, Newton RJ, McMahon KD.

mSphere. 2018 Sep 5;3(5). pii: e00327-18. doi: 10.1128/mSphere.00327-18.

3.

Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Strain MS-FC-4.

Bartelme RP, Barbier P, Lipscomb RS, LaPatra SE, Newton RJ, Evenhuis JP, McBride MJ.

Genome Announc. 2018 May 17;6(20). pii: e00429-18. doi: 10.1128/genomeA.00429-18.

4.

Stripping Away the Soil: Plant Growth Promoting Microbiology Opportunities in Aquaponics.

Bartelme RP, Oyserman BO, Blom JE, Sepulveda-Villet OJ, Newton RJ.

Front Microbiol. 2018 Jan 22;9:8. doi: 10.3389/fmicb.2018.00008. eCollection 2018.

5.

Photophobia in Lilioid monocots: photoinhibition of seed germination explained by seed traits, habitat adaptation and phylogenetic inertia.

Vandelook F, Newton RJ, Carta A.

Ann Bot. 2018 Mar 5;121(3):405-413. doi: 10.1093/aob/mcx147.

PMID:
29293885
6.

Using quality improvement methods to reduce clear fluid fasting times in children on a preoperative ward.

Newton RJG, Stuart GM, Willdridge DJ, Thomas M.

Paediatr Anaesth. 2017 Aug;27(8):793-800. doi: 10.1111/pan.13174. Epub 2017 Jul 4.

PMID:
28675597
7.
8.

Onset of the aerobic nitrogen cycle during the Great Oxidation Event.

Zerkle AL, Poulton SW, Newton RJ, Mettam C, Claire MW, Bekker A, Junium CK.

Nature. 2017 Feb 23;542(7642):465-467. doi: 10.1038/nature20826. Epub 2017 Feb 6.

9.

Dynamic anoxic ferruginous conditions during the end-Permian mass extinction and recovery.

Clarkson MO, Wood RA, Poulton SW, Richoz S, Newton RJ, Kasemann SA, Bowyer F, Krystyn L.

Nat Commun. 2016 Jul 19;7:12236. doi: 10.1038/ncomms12236.

10.

Complete Genome Sequence of the Fish Pathogen Flavobacterium columnare Strain C#2.

Bartelme RP, Newton RJ, Zhu Y, Li N, LaFrentz BR, McBride MJ.

Genome Announc. 2016 Jun 23;4(3). pii: e00624-16. doi: 10.1128/genomeA.00624-16.

11.

The biogeography of red snow microbiomes and their role in melting arctic glaciers.

Lutz S, Anesio AM, Raiswell R, Edwards A, Newton RJ, Gill F, Benning LG.

Nat Commun. 2016 Jun 22;7:11968. doi: 10.1038/ncomms11968.

12.

Influential factors inducing suboptimal humoral response to vector-based influenza immunisation in Thoroughbred foals.

Fougerolle S, Legrand L, Garrett D, Birand I, Foursin M, D'Ablon X, Bayssat P, Newton RJ, Pronost S, Paillot R.

Vaccine. 2016 Jul 19;34(33):3787-95. doi: 10.1016/j.vaccine.2016.05.068. Epub 2016 Jun 10.

PMID:
27269055
13.

Macrofossil evidence for a rapid and severe Cretaceous-Paleogene mass extinction in Antarctica.

Witts JD, Whittle RJ, Wignall PB, Crame JA, Francis JE, Newton RJ, Bowman VC.

Nat Commun. 2016 May 26;7:11738. doi: 10.1038/ncomms11738.

14.

The microbiome of urban waters.

McLellan SL, Fisher JC, Newton RJ.

Int Microbiol. 2015 Sep;18(3):141-9. doi: 10.2436/20.1501.01.244. Review.

15.

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

Graham EB, Knelman JE, Schindlbacher A, Siciliano S, Breulmann M, Yannarell A, Beman JM, Abell G, Philippot L, Prosser J, Foulquier A, Yuste JC, Glanville HC, Jones DL, Angel R, Salminen J, Newton RJ, Bürgmann H, Ingram LJ, Hamer U, Siljanen HM, Peltoniemi K, Potthast K, Bañeras L, Hartmann M, Banerjee S, Yu RQ, Nogaro G, Richter A, Koranda M, Castle SC, Goberna M, Song B, Chatterjee A, Nunes OC, Lopes AR, Cao Y, Kaisermann A, Hallin S, Strickland MS, Garcia-Pausas J, Barba J, Kang H, Isobe K, Papaspyrou S, Pastorelli R, Lagomarsino A, Lindström ES, Basiliko N, Nemergut DR.

Front Microbiol. 2016 Feb 24;7:214. doi: 10.3389/fmicb.2016.00214. eCollection 2016.

16.

Urban microbial ecology of a freshwater estuary of Lake Michigan.

Fisher JC, Newton RJ, Dila DK, McLellan SL.

Elementa (Wash D C). 2015;3. pii: 000064. Epub 2015 Jul 29.

17.

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.

Bendall ML, Stevens SL, Chan LK, Malfatti S, Schwientek P, Tremblay J, Schackwitz W, Martin J, Pati A, Bushnell B, Froula J, Kang D, Tringe SG, Bertilsson S, Moran MA, Shade A, Newton RJ, McMahon KD, Malmstrom RR.

ISME J. 2016 Jul;10(7):1589-601. doi: 10.1038/ismej.2015.241. Epub 2016 Jan 8.

18.

A unique assemblage of cosmopolitan freshwater bacteria and higher community diversity differentiate an urbanized estuary from oligotrophic Lake Michigan.

Newton RJ, McLellan SL.

Front Microbiol. 2015 Sep 29;6:1028. doi: 10.3389/fmicb.2015.01028. eCollection 2015.

19.

Risk factors for epistaxis in jump racing in Great Britain (2001-2009).

Reardon RJ, Boden LA, Mellor DJ, Love S, Newton RJ, Stirk AJ, Parkin TD.

Vet J. 2015 Jul;205(1):44-9. doi: 10.1016/j.tvjl.2015.04.003. Epub 2015 Apr 9.

PMID:
26045356
20.

Detection of multi-drug resistant Escherichia coli in the urban waterways of Milwaukee, WI.

Kappell AD, DeNies MS, Ahuja NH, Ledeboer NA, Newton RJ, Hristova KR.

Front Microbiol. 2015 Apr 29;6:336. doi: 10.3389/fmicb.2015.00336. eCollection 2015.

21.

Cutaneous and renal glomerular vasculopathy as a cause of acute kidney injury in dogs in the UK.

Holm LP, Hawkins I, Robin C, Newton RJ, Jepson R, Stanzani G, McMahon LA, Pesavento P, Carr T, Cogan T, Couto CG, Cianciolo R, Walker DJ.

Vet Rec. 2015 Apr 11;176(15):384. doi: 10.1136/vr.102892. Epub 2015 Mar 23.

22.

Sewage reflects the microbiomes of human populations.

Newton RJ, McLellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML.

MBio. 2015 Feb 24;6(2):e02574. doi: 10.1128/mBio.02574-14.

23.

A single genus in the gut microbiome reflects host preference and specificity.

Eren AM, Sogin ML, Morrison HG, Vineis JH, Fisher JC, Newton RJ, McLellan SL.

ISME J. 2015 Jan;9(1):90-100. doi: 10.1038/ismej.2014.97. Epub 2014 Jun 17.

24.

The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill.

Kappell AD, Wei Y, Newton RJ, Van Nostrand JD, Zhou J, McLellan SL, Hristova KR.

Front Microbiol. 2014 May 9;5:205. doi: 10.3389/fmicb.2014.00205. eCollection 2014.

25.

Analysis of the gull fecal microbial community reveals the dominance of Catellicoccus marimammalium in relation to culturable Enterococci.

Koskey AM, Fisher JC, Traudt MF, Newton RJ, McLellan SL.

Appl Environ Microbiol. 2014 Jan;80(2):757-65. doi: 10.1128/AEM.02414-13. Epub 2013 Nov 15.

26.

Shifts in the microbial community composition of Gulf Coast beaches following beach oiling.

Newton RJ, Huse SM, Morrison HG, Peake CS, Sogin ML, McLellan SL.

PLoS One. 2013 Sep 10;8(9):e74265. doi: 10.1371/journal.pone.0074265. eCollection 2013. Erratum in: PLoS One. 2014;9(4):e94671.

27.

Trophic flexibility and the persistence of understory birds in intensively logged rainforest.

Edwards DP, Woodcock P, Newton RJ, Edwards FA, Andrews DJ, Docherty TD, Mitchell SL, Ota T, Benedick S, Bottrell SH, Hamer KC.

Conserv Biol. 2013 Oct;27(5):1079-86. doi: 10.1111/cobi.12059. Epub 2013 May 6.

PMID:
23647024
28.

Impacts of intensive logging on the trophic organisation of ant communities in a biodiversity hotspot.

Woodcock P, Edwards DP, Newton RJ, Vun Khen C, Bottrell SH, Hamer KC.

PLoS One. 2013 Apr 10;8(4):e60756. doi: 10.1371/journal.pone.0060756. Print 2013.

29.
30.

A microbial signature approach to identify fecal pollution in the waters off an urbanized coast of Lake Michigan.

Newton RJ, Bootsma MJ, Morrison HG, Sogin ML, McLellan SL.

Microb Ecol. 2013 May;65(4):1011-23. doi: 10.1007/s00248-013-0200-9. Epub 2013 Mar 9.

31.

Sewage reflects the distribution of human faecal Lachnospiraceae.

McLellan SL, Newton RJ, Vandewalle JL, Shanks OC, Huse SM, Eren AM, Sogin ML.

Environ Microbiol. 2013 Aug;15(8):2213-27. doi: 10.1111/1462-2920.12092. Epub 2013 Feb 25.

32.

Comparison of the microbial community structures of untreated wastewaters from different geographic locales.

Shanks OC, Newton RJ, Kelty CA, Huse SM, Sogin ML, McLellan SL.

Appl Environ Microbiol. 2013 May;79(9):2906-13. doi: 10.1128/AEM.03448-12. Epub 2013 Feb 22.

33.

Spatial and temporal scales of aquatic bacterial beta diversity.

Jones SE, Cadkin TA, Newton RJ, McMahon KD.

Front Microbiol. 2012 Aug 31;3:318. doi: 10.3389/fmicb.2012.00318. eCollection 2012.

34.

Transcriptional changes underlying elemental stoichiometry shifts in a marine heterotrophic bacterium.

Chan LK, Newton RJ, Sharma S, Smith CB, Rayapati P, Limardo AJ, Meile C, Moran MA.

Front Microbiol. 2012 May 16;3:159. doi: 10.3389/fmicb.2012.00159. eCollection 2012.

35.

Assessing trophic position from nitrogen isotope ratios: effective calibration against spatially varying baselines.

Woodcock P, Edwards DP, Newton RJ, Edwards FA, Khen CV, Bottrell SH, Hamer KC.

Naturwissenschaften. 2012 Apr;99(4):275-83. doi: 10.1007/s00114-012-0896-2. Epub 2012 Feb 24.

PMID:
22361903
36.

Intracorneal hemorrhage in 19 dogs (22 eyes) from 2000 to 2010: a retrospective study.

Matas M, Donaldson D, Newton RJ.

Vet Ophthalmol. 2012 Mar;15(2):86-91. doi: 10.1111/j.1463-5224.2011.00944.x. Epub 2011 Nov 29.

PMID:
22129068
37.

The conservation value of South East Asia's highly degraded forests: evidence from leaf-litter ants.

Woodcock P, Edwards DP, Fayle TM, Newton RJ, Khen CV, Bottrell SH, Hamer KC.

Philos Trans R Soc Lond B Biol Sci. 2011 Nov 27;366(1582):3256-64. doi: 10.1098/rstb.2011.0031.

38.

Lachnospiraceae and Bacteroidales alternative fecal indicators reveal chronic human sewage contamination in an urban harbor.

Newton RJ, Vandewalle JL, Borchardt MA, Gorelick MH, McLellan SL.

Appl Environ Microbiol. 2011 Oct;77(19):6972-81. doi: 10.1128/AEM.05480-11. Epub 2011 Jul 29.

39.

Community structures of fecal bacteria in cattle from different animal feeding operations.

Shanks OC, Kelty CA, Archibeque S, Jenkins M, Newton RJ, McLellan SL, Huse SM, Sogin ML.

Appl Environ Microbiol. 2011 May;77(9):2992-3001. doi: 10.1128/AEM.02988-10. Epub 2011 Mar 4.

40.

A guide to the natural history of freshwater lake bacteria.

Newton RJ, Jones SE, Eiler A, McMahon KD, Bertilsson S.

Microbiol Mol Biol Rev. 2011 Mar;75(1):14-49. doi: 10.1128/MMBR.00028-10. Review.

41.

Seasonal differences in bacterial community composition following nutrient additions in a eutrophic lake.

Newton RJ, McMahon KD.

Environ Microbiol. 2011 Apr;13(4):887-99. doi: 10.1111/j.1462-2920.2010.02387.x. Epub 2010 Dec 7.

PMID:
21138514
42.

The importance of the relationship between scale and process in understanding long-term DOC dynamics.

Clark JM, Bottrell SH, Evans CD, Monteith DT, Bartlett R, Rose R, Newton RJ, Chapman PJ.

Sci Total Environ. 2010 Jun 1;408(13):2768-75. doi: 10.1016/j.scitotenv.2010.02.046. Epub 2010 Apr 15.

PMID:
20398915
43.

Nitrification-denitrification in waste stabilisation ponds: a mechanism for permanent nitrogen removal in maturation ponds.

Camargo Valero MA, Read LF, Mara DD, Newton RJ, Curtis TP, Davenport RJ.

Water Sci Technol. 2010;61(5):1137-46. doi: 10.2166/wst.2010.963.

44.

Occurrence of tetracycline resistance genes in aquaculture facilities with varying use of oxytetracycline.

Seyfried EE, Newton RJ, Rubert KF 4th, Pedersen JA, McMahon KD.

Microb Ecol. 2010 May;59(4):799-807. doi: 10.1007/s00248-009-9624-7. Epub 2010 Mar 9.

45.

Nitrogen removal in maturation waste stabilisation ponds via biological uptake and sedimentation of dead biomass.

Camargo Valero MA, Mara DD, Newton RJ.

Water Sci Technol. 2010;61(4):1027-34. doi: 10.2166/wst.2010.952.

46.

Genome characteristics of a generalist marine bacterial lineage.

Newton RJ, Griffin LE, Bowles KM, Meile C, Gifford S, Givens CE, Howard EC, King E, Oakley CA, Reisch CR, Rinta-Kanto JM, Sharma S, Sun S, Varaljay V, Vila-Costa M, Westrich JR, Moran MA.

ISME J. 2010 Jun;4(6):784-98. doi: 10.1038/ismej.2009.150. Epub 2010 Jan 14.

PMID:
20072162
47.

Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes.

Jones SE, Newton RJ, McMahon KD.

Environ Microbiol. 2009 Sep;11(9):2463-72. doi: 10.1111/j.1462-2920.2009.01977.x. Epub 2009 Jun 22.

PMID:
19558514
48.

Volcanism, mass extinction, and carbon isotope fluctuations in the Middle Permian of China.

Wignall PB, Sun Y, Bond DP, Izon G, Newton RJ, Védrine S, Widdowson M, Ali JR, Lai X, Jiang H, Cope H, Bottrell SH.

Science. 2009 May 29;324(5931):1179-82. doi: 10.1126/science.1171956.

49.

Potential for atmospheric deposition of bacteria to influence bacterioplankton communities.

Jones SE, Newton RJ, McMahon KD.

FEMS Microbiol Ecol. 2008 Jun;64(3):388-94. doi: 10.1111/j.1574-6941.2008.00476.x. Epub 2008 Apr 2.

50.

Phylogenetic ecology of the freshwater Actinobacteria acI lineage.

Newton RJ, Jones SE, Helmus MR, McMahon KD.

Appl Environ Microbiol. 2007 Nov;73(22):7169-76. Epub 2007 Sep 7.

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