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Items: 1 to 50 of 61

1.

SVM-SulfoSite: A support vector machine based predictor for sulfenylation sites.

Al-Barakati HJ, McConnell EW, Hicks LM, Poole LB, Newman RH, Kc DB.

Sci Rep. 2018 Jul 26;8(1):11288. doi: 10.1038/s41598-018-29126-x.

2.

Undiagnosed Kidney Injury in Uninsured and Underinsured Diabetic African American Men and Putative Role of Meprin Metalloproteases in Diabetic Nephropathy.

Cao L, Sedighi R, Boston A, Premadasa L, Pinder J, Crawford GE, Jegede OE, Harrison SH, Newman RH, Ongeri EM.

Int J Nephrol. 2018 Apr 29;2018:6753489. doi: 10.1155/2018/6753489. eCollection 2018.

3.

Integrated Strategies to Gain a Systems-Level View of Dynamic Signaling Networks.

Newman RH, Zhang J.

Methods Enzymol. 2017;589:133-170. doi: 10.1016/bs.mie.2017.01.016. Epub 2017 Mar 7.

4.

A mild thermomechanical process for the enzymatic conversion of radiata pine into fermentable sugars and lignin.

Suckling ID, Jack MW, Lloyd JA, Murton KD, Newman RH, Stuthridge TR, Torr KM, Vaidya AA.

Biotechnol Biofuels. 2017 Mar 9;10:61. doi: 10.1186/s13068-017-0748-6. eCollection 2017.

5.

RF-Hydroxysite: a random forest based predictor for hydroxylation sites.

Ismail HD, Newman RH, Kc DB.

Mol Biosyst. 2016 Jul 19;12(8):2427-35. doi: 10.1039/c6mb00179c.

6.

Micromorphological changes and mechanism associated with wet ball milling of Pinus radiata substrate and consequences for saccharification at low enzyme loading.

Vaidya AA, Donaldson LA, Newman RH, Suckling ID, Campion SH, Lloyd JA, Murton KD.

Bioresour Technol. 2016 Aug;214:132-137. doi: 10.1016/j.biortech.2016.04.084. Epub 2016 Apr 20.

PMID:
27131293
7.

RF-Phos: A Novel General Phosphorylation Site Prediction Tool Based on Random Forest.

Ismail HD, Jones A, Kim JH, Newman RH, Kc DB.

Biomed Res Int. 2016;2016:3281590. doi: 10.1155/2016/3281590. Epub 2016 Mar 15.

8.

Isoform-specific interactions between meprin metalloproteases and the catalytic subunit of protein kinase A: significance in acute and chronic kidney injury.

Niyitegeka JM, Bastidas AC, Newman RH, Taylor SS, Ongeri EM.

Am J Physiol Renal Physiol. 2015 Jan 1;308(1):F56-68. doi: 10.1152/ajprenal.00167.2014. Epub 2014 Oct 29.

9.

Toward a systems-level view of dynamic phosphorylation networks.

Newman RH, Zhang J, Zhu H.

Front Genet. 2014 Aug 15;5:263. doi: 10.3389/fgene.2014.00263. eCollection 2014. Review.

10.

Nanoscale interactions of polyethylene glycol with thermo-mechanically pre-treated Pinus radiata biofuel substrate.

Donaldson LA, Newman RH, Vaidya A.

Biotechnol Bioeng. 2014 Apr;111(4):719-25. doi: 10.1002/bit.25138. Epub 2013 Nov 18.

PMID:
24249156
11.

PhosphoNetworks: a database for human phosphorylation networks.

Hu J, Rho HS, Newman RH, Zhang J, Zhu H, Qian J.

Bioinformatics. 2014 Jan 1;30(1):141-2. doi: 10.1093/bioinformatics/btt627. Epub 2013 Nov 13.

12.

Wide-angle x-ray scattering and solid-state nuclear magnetic resonance data combined to test models for cellulose microfibrils in mung bean cell walls.

Newman RH, Hill SJ, Harris PJ.

Plant Physiol. 2013 Dec;163(4):1558-67. doi: 10.1104/pp.113.228262. Epub 2013 Oct 23.

13.

The design and application of genetically encodable biosensors based on fluorescent proteins.

Newman RH, Zhang J.

Methods Mol Biol. 2014;1071:1-16. doi: 10.1007/978-1-62703-622-1_1.

14.

Construction of human activity-based phosphorylation networks.

Newman RH, Hu J, Rho HS, Xie Z, Woodard C, Neiswinger J, Cooper C, Shirley M, Clark HM, Hu S, Hwang W, Jeong JS, Wu G, Lin J, Gao X, Ni Q, Goel R, Xia S, Ji H, Dalby KN, Birnbaum MJ, Cole PA, Knapp S, Ryazanov AG, Zack DJ, Blackshaw S, Pawson T, Gingras AC, Desiderio S, Pandey A, Turk BE, Zhang J, Zhu H, Qian J.

Mol Syst Biol. 2013;9:655. doi: 10.1038/msb.2013.12.

15.

Global analysis of phosphorylation networks in humans.

Hu J, Rho HS, Newman RH, Hwang W, Neiswinger J, Zhu H, Zhang J, Qian J.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt B):224-31. doi: 10.1016/j.bbapap.2013.03.009. Epub 2013 Mar 21.

16.

A mathematical model for the inhibitory effects of lignin in enzymatic hydrolysis of lignocellulosics.

Newman RH, Vaidya AA, Campion SH.

Bioresour Technol. 2013 Feb;130:757-62. doi: 10.1016/j.biortech.2012.12.122. Epub 2012 Dec 23.

PMID:
23340076
17.

Optimizing the enzyme loading and incubation time in enzymatic hydrolysis of lignocellulosic substrates.

Newman RH, Vaidya AA, Sohel MI, Jack MW.

Bioresour Technol. 2013 Feb;129:33-8. doi: 10.1016/j.biortech.2012.11.028. Epub 2012 Nov 15.

PMID:
23232221
18.

Effects of cooking on the cell walls (dietary fiber) of 'Scarlet Warren' winter squash ( Cucurbita maxima ) studied by polysaccharide linkage analysis and solid-state (13)C NMR.

Ratnayake RM, Sims IM, Newman RH, Melton LD.

J Agric Food Chem. 2011 Jul 13;59(13):7186-93. doi: 10.1021/jf104784g. Epub 2011 Jun 20.

PMID:
21604813
19.

Genetically encodable fluorescent biosensors for tracking signaling dynamics in living cells.

Newman RH, Fosbrink MD, Zhang J.

Chem Rev. 2011 May 11;111(5):3614-66. doi: 10.1021/cr100002u. Epub 2011 Apr 1. Review. No abstract available.

20.

Using solid-state ¹³C NMR spectroscopy to study the molecular organisation of primary plant cell walls.

Bootten TJ, Harris PJ, Melton LD, Newman RH.

Methods Mol Biol. 2011;715:179-96. doi: 10.1007/978-1-61779-008-9_13.

PMID:
21222085
21.

EMDataBank.org: unified data resource for CryoEM.

Lawson CL, Baker ML, Best C, Bi C, Dougherty M, Feng P, van Ginkel G, Devkota B, Lagerstedt I, Ludtke SJ, Newman RH, Oldfield TJ, Rees I, Sahni G, Sala R, Velankar S, Warren J, Westbrook JD, Henrick K, Kleywegt GJ, Berman HM, Chiu W.

Nucleic Acids Res. 2011 Jan;39(Database issue):D456-64. doi: 10.1093/nar/gkq880. Epub 2010 Oct 8.

22.

Solid-state 13C NMR study of a composite of tobacco xyloglucan and Gluconacetobacter xylinus cellulose: molecular interactions between the component polysaccharides.

Bootten TJ, Harris PJ, Melton LD, Newman RH.

Biomacromolecules. 2009 Nov 9;10(11):2961-7. doi: 10.1021/bm900762m.

PMID:
19817435
23.

The structure and function of fluorescent proteins.

Sample V, Newman RH, Zhang J.

Chem Soc Rev. 2009 Oct;38(10):2852-64. doi: 10.1039/b913033k. Epub 2009 Aug 21. Review.

PMID:
19771332
24.

Physico-chemical properties of polyhydroxyalkanoate produced by mixed-culture nitrogen-fixing bacteria.

Patel M, Gapes DJ, Newman RH, Dare PH.

Appl Microbiol Biotechnol. 2009 Mar;82(3):545-55. doi: 10.1007/s00253-008-1836-0. Epub 2009 Jan 6.

PMID:
19125246
25.

Dynamic visualization of signaling activities in living cells.

Allen MD, DiPilato LM, Ananthanarayanan B, Newman RH, Ni Q, Zhang J.

Sci Signal. 2008 Sep 16;1(37):pt6. doi: 10.1126/scisignal.137pt6.

PMID:
18799423
26.

Small molecules and chemical tools at the interface.

Newman RH, Zhang J.

Nat Chem Biol. 2008 Jul;4(7):382-6. doi: 10.1038/nchembio0708-382.

PMID:
18560425
27.

Visualization of phosphatase activity in living cells with a FRET-based calcineurin activity sensor.

Newman RH, Zhang J.

Mol Biosyst. 2008 Jun;4(6):496-501. doi: 10.1039/b720034j. Epub 2008 Feb 14.

PMID:
18493642
28.

Fucci: street lights on the road to mitosis.

Newman RH, Zhang J.

Chem Biol. 2008 Feb;15(2):97-8. doi: 10.1016/j.chembiol.2008.02.003.

29.

WAXS and 13C NMR study of Gluconoacetobacter xylinus cellulose in composites with tamarind xyloglucan.

Bootten TJ, Harris PJ, Melton LD, Newman RH.

Carbohydr Res. 2008 Feb 4;343(2):221-9. Epub 2007 Nov 17.

PMID:
18048015
30.

Variations in the fibre repeat between samples of cellulose I from different sources.

Davidson TC, Newman RH, Ryan MJ.

Carbohydr Res. 2004 Dec 27;339(18):2889-93.

PMID:
15582616
32.

Celery (Apium graveolens) parenchyma cell walls: cell walls with minimal xyloglucan.

Thimm JC, Burritt DJ, Sims IM, Newman RH, Ducker WA, Melton LD.

Physiol Plant. 2002 Oct;116(2):164-171.

PMID:
12354192
33.

Conformational features of crystal-surface cellulose from higher plants.

Viëtor RJ, Newman RH, Ha MA, Apperley DC, Jarvis MC.

Plant J. 2002 Jun;30(6):721-31.

35.

Structure of the AAA ATPase p97.

Zhang X, Shaw A, Bates PA, Newman RH, Gowen B, Orlova E, Gorman MA, Kondo H, Dokurno P, Lally J, Leonard G, Meyer H, van Heel M, Freemont PS.

Mol Cell. 2000 Dec;6(6):1473-84.

36.

Estimation of the lateral dimensions of cellulose crystallites using 13C NMR signal strengths.

Newman RH.

Solid State Nucl Magn Reson. 1999 Oct;15(1):21-9.

PMID:
10903081
37.

Oligomeric ring structure of the Bloom's syndrome helicase.

Karow JK, Newman RH, Freemont PS, Hickson ID.

Curr Biol. 1999 Jun 3;9(11):597-600.

38.

Crystallization of an intact GST-estrogen receptor hormone binding domain fusion protein.

Lally JM, Newman RH, Knowles PP, Islam S, Coffer AI, Parker M, Freemont PS.

Acta Crystallogr D Biol Crystallogr. 1998 May 1;54(Pt 3):423-6.

PMID:
9761916
39.
40.

20S human proteasomes bind with a specific orientation to lipid monolayers in vitro.

Newman RH, Whitehead P, Lally J, Coffer A, Freemont P.

Biochim Biophys Acta. 1996 May 22;1281(1):111-6.

41.
42.
43.

Microcrystals of the beta 1 isoenzyme of protein kinase C: an electron microscopic study.

Newman RH, Carpenter E, Freemont PS, Blundell TL, Parker PJ.

Biochem J. 1994 Mar 1;298 ( Pt 2):391-3.

44.

A model of the structure of human annexin VI bound to lipid monolayers.

Driessen HP, Newman RH, Freemont PS, Crumpton MJ.

FEBS Lett. 1992 Jul 13;306(1):75-9.

45.

Amino acid sequence analysis of the annexin super-gene family of proteins.

Barton GJ, Newman RH, Freemont PS, Crumpton MJ.

Eur J Biochem. 1991 Jun 15;198(3):749-60.

46.

The virulence of British isolates of bovid herpesvirus 1 in relationship to viral genotype.

Edwards S, Newman RH, White H.

Br Vet J. 1991 May-Jun;147(3):216-31.

PMID:
1652347
47.

2D crystal forms of annexin IV on lipid monolayers.

Newman RH, Leonard K, Crumpton MJ.

FEBS Lett. 1991 Feb 11;279(1):21-4.

48.

Two-dimensional crystallization of proteins on lipid monolayers.

Newman RH.

Electron Microsc Rev. 1991;4(2):197-203. Review.

PMID:
1932580
49.

Interaction of synthetic peptides from annexin I and uteroglobin with lipid monolayers and their effect on phospholipase A2 activity.

Newman RH, Freemont PS, Barton GJ, Crumpton MJ.

Biochem Soc Trans. 1990 Dec;18(6):1233-4. No abstract available.

PMID:
2150950
50.

Bedside blood sugar determinations in the critically ill.

Newman RH.

Heart Lung. 1988 Nov;17(6 Pt 1):667-9.

PMID:
3142821

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