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Items: 1 to 50 of 178

1.

The crystal structure of human forkhead box N1 in complex with DNA reveals the structural basis for forkhead box family specificity.

Newman JA, Aitkenhead H, Gavard AE, Rota IA, Handel AE, Hollander GA, Gileadi O.

J Biol Chem. 2019 Dec 30. pii: jbc.RA119.010365. doi: 10.1074/jbc.RA119.010365. [Epub ahead of print]

2.

Electrochemical Synthesis of Hindered Primary and Secondary Amines via Proton-Coupled Electron Transfer.

Lehnherr D, Lam YH, Nicastri MC, Liu J, Newman JA, Regalado EL, DiRocco DA, Rovis T.

J Am Chem Soc. 2020 Jan 8;142(1):468-478. doi: 10.1021/jacs.9b10870. Epub 2019 Dec 18.

PMID:
31849221
3.

A Ubiquitin-Binding Domain that Binds a Structural Fold Distinct from that of Ubiquitin.

Lim M, Newman JA, Williams HL, Masino L, Aitkenhead H, Gravard AE, Gileadi O, Svejstrup JQ.

Structure. 2019 Aug 6;27(8):1316-1325.e6. doi: 10.1016/j.str.2019.05.003. Epub 2019 Jun 13.

4.

RECQL5: Another DNA helicase potentially involved in hereditary breast cancer susceptibility.

Tavera-Tapia A, de la Hoya M, Calvete O, Martin-Gimeno P, Fernández V, Macías JA, Alonso B, Pombo L, de Diego C, Alonso R, Pita G, Barroso A, Urioste M, Caldés T, Newman JA, Benítez J, Osorio A.

Hum Mutat. 2019 May;40(5):566-577. doi: 10.1002/humu.23732. Epub 2019 Mar 13.

PMID:
30817846
5.

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains.

Lambert JP, Picaud S, Fujisawa T, Hou H, Savitsky P, Uusküla-Reimand L, Gupta GD, Abdouni H, Lin ZY, Tucholska M, Knight JDR, Gonzalez-Badillo B, St-Denis N, Newman JA, Stucki M, Pelletier L, Bandeira N, Wilson MD, Filippakopoulos P, Gingras AC.

Mol Cell. 2019 Feb 7;73(3):621-638.e17. doi: 10.1016/j.molcel.2018.11.006. Epub 2018 Dec 13.

6.

Structural insight into the human mitochondrial tRNA purine N1-methyltransferase and ribonuclease P complexes.

Oerum S, Roovers M, Rambo RP, Kopec J, Bailey HJ, Fitzpatrick F, Newman JA, Newman WG, Amberger A, Zschocke J, Droogmans L, Oppermann U, Yue WW.

J Biol Chem. 2018 Aug 17;293(33):12862-12876. doi: 10.1074/jbc.RA117.001286. Epub 2018 Jun 7.

7.

Current and potential future distribution of the American dog tick (Dermacentor variabilis, Say) in North America.

Minigan JN, Hager HA, Peregrine AS, Newman JA.

Ticks Tick Borne Dis. 2018 Feb;9(2):354-362. doi: 10.1016/j.ttbdis.2017.11.012. Epub 2017 Dec 8.

PMID:
29275873
8.

The plant hormone salicylic acid interacts with the mechanism of anti-herbivory conferred by fungal endophytes in grasses.

Bastías DA, Alejandra Martínez-Ghersa M, Newman JA, Card SD, Mace WJ, Gundel PE.

Plant Cell Environ. 2018 Feb;41(2):395-405. doi: 10.1111/pce.13102. Epub 2018 Jan 9.

PMID:
29194664
9.

Image Gallery: A case of chronic eosinophilic leukaemia.

Rider TG, George SMC, Batool A, Tidbury HL, Grace RJ, Newman JA, Ali Z, Felton JR.

Br J Dermatol. 2017 Oct;177(4):e156. doi: 10.1111/bjd.15820. No abstract available.

PMID:
29052898
10.

Influence of rapidly successive head impacts on brain strain in the vicinity of bridging veins.

Knowles BM, MacGillivray SR, Newman JA, Dennison CR.

J Biomech. 2017 Jul 5;59:59-70. doi: 10.1016/j.jbiomech.2017.05.016. Epub 2017 May 23.

PMID:
28577905
11.
12.

Insights into the RecQ helicase mechanism revealed by the structure of the helicase domain of human RECQL5.

Newman JA, Aitkenhead H, Savitsky P, Gileadi O.

Nucleic Acids Res. 2017 Apr 20;45(7):4231-4243. doi: 10.1093/nar/gkw1362.

13.

Integrating Fiber Optic Strain Sensors into Metal Using Ultrasonic Additive Manufacturing.

Hehr A, Norfolk M, Wenning J, Sheridan J, Leser P, Leser P, Newman JA.

JOM (1989). 2017;70(3):315-320. doi: 10.1007/s11837-017-2709-8. Epub 2017 Dec 21.

14.

Synchrotron X-Ray Diffraction Dynamic Sampling for Protein Crystal Centering.

Scarborough NM, Godaliyadda GMDP, Ye DH, Kissick DJ, Zhang S, Newman JA, Sheedlo MJ, Chowdhury A, Fischetti RF, Das C, Buzzard GT, Bouman CA, Simpson GJ.

IS&T Int Symp Electron Imaging. 2017;2017:6-9. doi: 10.2352/ISSN.2470-1173.2017.17.COIMG-415. Epub 2017 Jan 29.

15.

Dynamic X-ray diffraction sampling for protein crystal positioning.

Scarborough NM, Godaliyadda GM, Ye DH, Kissick DJ, Zhang S, Newman JA, Sheedlo MJ, Chowdhury AU, Fischetti RF, Das C, Buzzard GT, Bouman CA, Simpson GJ.

J Synchrotron Radiat. 2017 Jan 1;24(Pt 1):188-195. doi: 10.1107/S160057751601612X. Epub 2017 Jan 1.

16.

Metalloprotease SPRTN/DVC1 Orchestrates Replication-Coupled DNA-Protein Crosslink Repair.

Vaz B, Popovic M, Newman JA, Fielden J, Aitkenhead H, Halder S, Singh AN, Vendrell I, Fischer R, Torrecilla I, Drobnitzky N, Freire R, Amor DJ, Lockhart PJ, Kessler BM, McKenna GW, Gileadi O, Ramadan K.

Mol Cell. 2016 Nov 17;64(4):704-719. doi: 10.1016/j.molcel.2016.09.032. Epub 2016 Oct 27.

17.

Unified Theory for Polarization Analysis in Second Harmonic and Sum Frequency Microscopy.

Dow XY, DeWalt EL, Newman JA, Dettmar CM, Simpson GJ.

Biophys J. 2016 Oct 4;111(7):1553-1568. doi: 10.1016/j.bpj.2016.04.019.

18.

Nonlinear Optical Characterization of Membrane Protein Microcrystals and Nanocrystals.

Newman JA, Simpson GJ.

Adv Exp Med Biol. 2016;922:91-103. doi: 10.1007/978-3-319-35072-1_7.

PMID:
27553237
19.

Spatial Competition: Roughening of an Experimental Interface.

Allstadt AJ, Newman JA, Walter JA, Korniss G, Caraco T.

Sci Rep. 2016 Jul 28;6:29908. doi: 10.1038/srep29908.

20.

Second harmonic generation correlation spectroscopy for characterizing translationally diffusing protein nanocrystals.

Dow XY, Dettmar CM, DeWalt EL, Newman JA, Dow AR, Roy-Chowdhury S, Coe JD, Kupitz C, Fromme P, Simpson GJ.

Acta Crystallogr D Struct Biol. 2016 Jul;72(Pt 7):849-59. doi: 10.1107/S205979831600841X. Epub 2016 Jun 23.

21.

Guiding synchrotron X-ray diffraction by multimodal video-rate protein crystal imaging.

Newman JA, Zhang S, Sullivan SZ, Dow XY, Becker M, Sheedlo MJ, Stepanov S, Carlsen MS, Everly RM, Das C, Fischetti RF, Simpson GJ.

J Synchrotron Radiat. 2016 Jul;23(Pt 4):959-65. doi: 10.1107/S1600577516005919. Epub 2016 May 16.

22.

Effects of elevated CO2 on photosynthetic traits of native and invasive C3 and C4 grasses.

Hager HA, Ryan GD, Kovacs HM, Newman JA.

BMC Ecol. 2016 May 31;16:28. doi: 10.1186/s12898-016-0082-z.

23.

Multi-channel beam-scanning imaging at kHz frame rates by Lissajous trajectory microscopy.

Newman JA, Sullivan SZ, Muir RD, Sreehari S, Bouman CA, Simpson GJ.

Proc SPIE Int Soc Opt Eng. 2015 Mar 9;9330:933009.

24.

Imaging Hidden Objects with Spatial Speckle Intensity Correlations over Object Position.

Newman JA, Luo Q, Webb KJ.

Phys Rev Lett. 2016 Feb 19;116(7):073902. doi: 10.1103/PhysRevLett.116.073902. Epub 2016 Feb 18.

PMID:
26943537
25.

Structures of Two Melanoma-Associated Antigens Suggest Allosteric Regulation of Effector Binding.

Newman JA, Cooper CD, Roos AK, Aitkenhead H, Oppermann UC, Cho HJ, Osman R, Gileadi O.

PLoS One. 2016 Feb 24;11(2):e0148762. doi: 10.1371/journal.pone.0148762. eCollection 2016.

26.

Thermal Tolerances of the Spotted-Wing Drosophila Drosophila suzukii (Diptera: Drosophilidae).

Ryan GD, Emiljanowicz L, Wilkinson F, Kornya M, Newman JA.

J Econ Entomol. 2016 Apr;109(2):746-52.

PMID:
26880397
27.

Mixed-strain housing for female C57BL/6, DBA/2, and BALB/c mice: validating a split-plot design that promotes refinement and reduction.

Walker M, Fureix C, Palme R, Newman JA, Ahloy Dallaire J, Mason G.

BMC Med Res Methodol. 2016 Jan 27;16:11. doi: 10.1186/s12874-016-0113-7.

28.

Structure of the Helicase Domain of DNA Polymerase Theta Reveals a Possible Role in the Microhomology-Mediated End-Joining Pathway.

Newman JA, Cooper CDO, Aitkenhead H, Gileadi O.

Structure. 2015 Dec 1;23(12):2319-2330. doi: 10.1016/j.str.2015.10.014.

29.

The structures of the SNM1A and SNM1B/Apollo nuclease domains reveal a potential basis for their distinct DNA processing activities.

Allerston CK, Lee SY, Newman JA, Schofield CJ, McHugh PJ, Gileadi O.

Nucleic Acids Res. 2015 Dec 15;43(22):11047-60. doi: 10.1093/nar/gkv1256. Epub 2015 Nov 17.

30.

Effects of external helmet accessories on biomechanical measures of head injury risk: An ATD study using the HYBRIDIII headform.

Butz RC, Knowles BM, Newman JA, Dennison CR.

J Biomech. 2015 Nov 5;48(14):3816-24. doi: 10.1016/j.jbiomech.2015.09.032. Epub 2015 Oct 8.

PMID:
26477409
31.

Parts per Million Powder X-ray Diffraction.

Newman JA, Schmitt PD, Toth SJ, Deng F, Zhang S, Simpson GJ.

Anal Chem. 2015 Nov 3;87(21):10950-5. doi: 10.1021/acs.analchem.5b02758. Epub 2015 Oct 22.

32.

Effects of the Epichloë fungal endophyte symbiosis with Schedonorus pratensis on host grass invasiveness.

Shukla K, Hager HA, Yurkonis KA, Newman JA.

Ecol Evol. 2015 Jul;5(13):2596-607. doi: 10.1002/ece3.1536. Epub 2015 Jun 4.

33.

Autoimmune haemolytic anaemia occurring during ibrutinib therapy for chronic lymphocytic leukaemia.

Rider TG, Grace RJ, Newman JA.

Br J Haematol. 2016 Apr;173(2):326-7. doi: 10.1111/bjh.13602. Epub 2015 Jul 20. No abstract available.

PMID:
26195269
34.

Intercalating dyes for enhanced contrast in second-harmonic generation imaging of protein crystals.

Newman JA, Scarborough NM, Pogranichniy NR, Shrestha RK, Closser RG, Das C, Simpson GJ.

Acta Crystallogr D Biol Crystallogr. 2015 Jul;71(Pt 7):1471-7. doi: 10.1107/S1399004715008287. Epub 2015 Jun 30.

35.

Crystal structure of the Bloom's syndrome helicase indicates a role for the HRDC domain in conformational changes.

Newman JA, Savitsky P, Allerston CK, Bizard AH, Özer Ö, Sarlós K, Liu Y, Pardon E, Steyaert J, Hickson ID, Gileadi O.

Nucleic Acids Res. 2015 May 26;43(10):5221-35. doi: 10.1093/nar/gkv373. Epub 2015 Apr 21.

36.

Structures of the Ets Protein DNA-binding Domains of Transcription Factors Etv1, Etv4, Etv5, and Fev: DETERMINANTS OF DNA BINDING AND REDOX REGULATION BY DISULFIDE BOND FORMATION.

Cooper CD, Newman JA, Aitkenhead H, Allerston CK, Gileadi O.

J Biol Chem. 2015 May 29;290(22):13692-709. doi: 10.1074/jbc.M115.646737. Epub 2015 Apr 12.

37.

Structural insights into the autoregulation and cooperativity of the human transcription factor Ets-2.

Newman JA, Cooper CD, Aitkenhead H, Gileadi O.

J Biol Chem. 2015 Mar 27;290(13):8539-49. doi: 10.1074/jbc.M114.619270. Epub 2015 Feb 10.

38.

Imaging optical fields through heavily scattering media.

Newman JA, Webb KJ.

Phys Rev Lett. 2014 Dec 31;113(26):263903. Epub 2014 Dec 30.

PMID:
25615337
39.

Circular Bessel statistics: derivation and application to wave propagation in random media.

Chen Y, Newman JA, Webb KJ.

J Opt Soc Am A Opt Image Sci Vis. 2014 Dec 1;31(12):2744-52. doi: 10.1364/JOSAA.31.002744.

PMID:
25606764
40.

Imaging local electric fields produced upon synchrotron X-ray exposure.

Dettmar CM, Newman JA, Toth SJ, Becker M, Fischetti RF, Simpson GJ.

Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):696-701. doi: 10.1073/pnas.1407771112. Epub 2014 Dec 31.

41.

High frame-rate multichannel beam-scanning microscopy based on Lissajous trajectories.

Sullivan SZ, Muir RD, Newman JA, Carlsen MS, Sreehari S, Doerge C, Begue NJ, Everly RM, Bouman CA, Simpson GJ.

Opt Express. 2014 Oct 6;22(20):24224-34. doi: 10.1364/OE.22.024224.

42.

Zero-mean circular Bessel statistics and Anderson localization.

Newman JA, Chen Y, Webb KJ.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Aug;90(2):022119. Epub 2014 Aug 18.

PMID:
25215701
43.

Predicting potential global distributions of two Miscanthus grasses: implications for horticulture, biofuel production, and biological invasions.

Hager HA, Sinasac SE, Gedalof Z, Newman JA.

PLoS One. 2014 Jun 19;9(6):e100032. doi: 10.1371/journal.pone.0100032. eCollection 2014.

44.

Transcript profiling of fructan biosynthetic pathway genes reveals association of a specific fructosyltransferase isoform with the high sugar trait in Lolium perenne.

Rasmussen S, Parsons AJ, Xue H, Liu Q, Jones CS, Ryan GD, Newman JA.

J Plant Physiol. 2014 Apr 15;171(7):475-85. doi: 10.1016/j.jplph.2013.12.008. Epub 2014 Mar 6.

PMID:
24655383
45.

Climate and host plant availability impact the future distribution of the bean leaf beetle (Cerotoma trifurcata).

Berzitis EA, Minigan JN, Hallett RH, Newman JA.

Glob Chang Biol. 2014 Sep;20(9):2778-92. doi: 10.1111/gcb.12557. Epub 2014 May 27.

PMID:
24616016
46.

Exploring the role of SlrR and SlrA in the SinR epigenetic switch.

Newman JA, Lewis RJ.

Commun Integr Biol. 2013 Nov 1;6(6):e25658. doi: 10.4161/cib.25658. Epub 2013 Jul 9.

47.

Recent advances in the structural molecular biology of Ets transcription factors: interactions, interfaces and inhibition.

Cooper CD, Newman JA, Gileadi O.

Biochem Soc Trans. 2014 Feb;42(1):130-8. doi: 10.1042/BST20130227. Review.

48.

The effect of endophyte presence on Schedonorus arundinaceus (tall fescue) establishment varies with grassland community structure.

Yurkonis KA, Drystek E, Maherali H, Newman JA.

Oecologia. 2014 Apr;174(4):1377-86. doi: 10.1007/s00442-013-2862-x. Epub 2014 Jan 3.

PMID:
24385086
49.

Characterization of salt interferences in second-harmonic generation detection of protein crystals.

Closser RG, Gualtieri EJ, Newman JA, Simpson GJ.

J Appl Crystallogr. 2013 Dec 1;46(Pt 6):1903-1906. Epub 2013 Nov 15.

50.

The YmdB phosphodiesterase is a global regulator of late adaptive responses in Bacillus subtilis.

Diethmaier C, Newman JA, Kovács AT, Kaever V, Herzberg C, Rodrigues C, Boonstra M, Kuipers OP, Lewis RJ, Stülke J.

J Bacteriol. 2014 Jan;196(2):265-75. doi: 10.1128/JB.00826-13. Epub 2013 Oct 25.

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