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Maternal versus artificial rearing shapes the rumen microbiome having minor long-term physiological implications.

Belanche A, Yáñez-Ruiz DR, Detheridge AP, Griffith GW, Kingston-Smith AH, Newbold CJ.

Environ Microbiol. 2019 Sep 13. doi: 10.1111/1462-2920.14801. [Epub ahead of print]


Rumen bacterial community responses to DPA, EPA and DHA in cattle and sheep: A comparative in vitro study.

Carreño D, Toral PG, Pinloche E, Belenguer A, Yáñez-Ruiz DR, Hervás G, McEwan NR, Newbold CJ, Frutos P.

Sci Rep. 2019 Aug 14;9(1):11857. doi: 10.1038/s41598-019-48294-y.


Not all saponins have a greater antiprotozoal activity than their related sapogenins.

Ramos-Morales E, Lyons L, de la Fuente G, Braganca R, Newbold CJ.

FEMS Microbiol Lett. 2019 Jul 1;366(13). pii: fnz144. doi: 10.1093/femsle/fnz144.


Differentially expressed mRNAs, proteins and miRNAs associated to energy metabolism in skeletal muscle of beef cattle identified for low and high residual feed intake.

Carvalho EB, Gionbelli MP, Rodrigues RTS, Bonilha SFM, Newbold CJ, Guimarães SEF, Silva W, Verardo LL, Silva FF, Detmann E, Duarte MS.

BMC Genomics. 2019 Jun 17;20(1):501. doi: 10.1186/s12864-019-5890-z.


A Multi-Kingdom Study Reveals the Plasticity of the Rumen Microbiota in Response to a Shift From Non-grazing to Grazing Diets in Sheep.

Belanche A, Kingston-Smith AH, Griffith GW, Newbold CJ.

Front Microbiol. 2019 Feb 11;10:122. doi: 10.3389/fmicb.2019.00122. eCollection 2019.


Slight changes in the chemical structure of haemanthamine greatly influence the effect of the derivatives on rumen fermentation in vitro.

Ramos-Morales E, Tibble-Howlings J, Lyons L, Ogbu MO, Murphy PJ, Braganca R, Newbold CJ.

Sci Rep. 2019 Feb 21;9(1):2440. doi: 10.1038/s41598-019-38977-x.


Genome-wide association studies pathway-based meta-analysis for residual feed intake in beef cattle.

Duarte DAS, Newbold CJ, Detmann E, Silva FF, Freitas PHF, Veroneze R, Duarte MS.

Anim Genet. 2019 Apr;50(2):150-153. doi: 10.1111/age.12761. Epub 2019 Jan 15.


The Equine Gastrointestinal Microbiome: Impacts of Age and Obesity.

Morrison PK, Newbold CJ, Jones E, Worgan HJ, Grove-White DH, Dugdale AH, Barfoot C, Harris PA, Argo CM.

Front Microbiol. 2018 Dec 7;9:3017. doi: 10.3389/fmicb.2018.03017. eCollection 2018.


Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats.

Abecia L, Martínez-Fernandez G, Waddams K, Martín-García AI, Pinloche E, Creevey CJ, Denman SE, Newbold CJ, Yáñez-Ruiz DR.

Front Microbiol. 2018 Oct 9;9:2227. doi: 10.3389/fmicb.2018.02227. eCollection 2018.


Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future.

Huws SA, Creevey CJ, Oyama LB, Mizrahi I, Denman SE, Popova M, Muñoz-Tamayo R, Forano E, Waters SM, Hess M, Tapio I, Smidt H, Krizsan SJ, Yáñez-Ruiz DR, Belanche A, Guan L, Gruninger RJ, McAllister TA, Newbold CJ, Roehe R, Dewhurst RJ, Snelling TJ, Watson M, Suen G, Hart EH, Kingston-Smith AH, Scollan ND, do Prado RM, Pilau EJ, Mantovani HC, Attwood GT, Edwards JE, McEwan NR, Morrisson S, Mayorga OL, Elliott C, Morgavi DP.

Front Microbiol. 2018 Sep 25;9:2161. doi: 10.3389/fmicb.2018.02161. eCollection 2018. Review.


Short- and long-term effects of conventional and artificial rearing strategies on the health and performance of growing lambs.

Belanche A, Cooke J, Jones E, Worgan HJ, Newbold CJ.

Animal. 2019 Apr;13(4):740-749. doi: 10.1017/S1751731118002100. Epub 2018 Aug 17.


Effect of dietary fat to starch content on fecal microbiota composition and activity in dogs.

Schauf S, de la Fuente G, Newbold CJ, Salas-Mani A, Torre C, Abecia L, Castrillo C.

J Anim Sci. 2018 Jul 27. doi: 10.1093/jas/sky264. [Epub ahead of print]


Characterisation of the ruminal fermentation and microbiome in lambs supplemented with hydrolysable and condensed tannins.

Salami SA, Valenti B, Bella M, O'Grady MN, Luciano G, Kerry JP, Jones E, Priolo A, Newbold CJ.

FEMS Microbiol Ecol. 2018 May 1;94(5). doi: 10.1093/femsec/fiy061.


The effect of an isoflavonid-rich liquorice extract on fermentation, methanogenesis and the microbiome in the rumen simulation technique.

Ramos-Morales E, Rossi G, Cattin M, Jones E, Braganca R, Newbold CJ.

FEMS Microbiol Ecol. 2018 Mar 1;94(3). doi: 10.1093/femsec/fiy009.


Editorial: Engineering Rumen Metabolic Pathways: Where We Are, and Where Are We Heading.

Ungerfeld EM, Newbold CJ.

Front Microbiol. 2018 Jan 4;8:2627. doi: 10.3389/fmicb.2017.02627. eCollection 2017. No abstract available.


Improving the antiprotozoal effect of saponins in the rumen by combination with glycosidase inhibiting iminosugars or by modification of their chemical structure.

Ramos-Morales E, de la Fuente G, Nash RJ, Braganca R, Duval S, Bouillon ME, Lahmann M, Newbold CJ.

PLoS One. 2017 Sep 8;12(9):e0184517. doi: 10.1371/journal.pone.0184517. eCollection 2017.


Changes in the Total Fecal Bacterial Population in Individual Horses Maintained on a Restricted Diet Over 6 Weeks.

Dougal K, Harris PA, Girdwood SE, Creevey CJ, Curtis GC, Barfoot CF, Argo CM, Newbold CJ.

Front Microbiol. 2017 Aug 11;8:1502. doi: 10.3389/fmicb.2017.01502. eCollection 2017.


A Systems Biology Approach Reveals Differences in the Dynamics of Colonization and Degradation of Grass vs. Hay by Rumen Microbes with Minor Effects of Vitamin E Supplementation.

Belanche A, Newbold CJ, Lin W, Rees Stevens P, Kingston-Smith AH.

Front Microbiol. 2017 Aug 3;8:1456. doi: 10.3389/fmicb.2017.01456. eCollection 2017.


Natural and artificial feeding management before weaning promote different rumen microbial colonization but not differences in gene expression levels at the rumen epithelium of newborn goats.

Abecia L, Jiménez E, Martínez-Fernandez G, Martín-García AI, Ramos-Morales E, Pinloche E, Denman SE, Newbold CJ, Yáñez-Ruiz DR.

PLoS One. 2017 Aug 16;12(8):e0182235. doi: 10.1371/journal.pone.0182235. eCollection 2017.


Functional Resilience and Response to a Dietary Additive (Kefir) in Models of Foregut and Hindgut Microbial Fermentation In Vitro.

de la Fuente G, Jones E, Jones S, Newbold CJ.

Front Microbiol. 2017 Jun 28;8:1194. doi: 10.3389/fmicb.2017.01194. eCollection 2017.


Antiprotozoal Effect of Saponins in the Rumen Can Be Enhanced by Chemical Modifications in Their Structure.

Ramos-Morales E, de la Fuente G, Duval S, Wehrli C, Bouillon M, Lahmann M, Preskett D, Braganca R, Newbold CJ.

Front Microbiol. 2017 Mar 16;8:399. doi: 10.3389/fmicb.2017.00399. eCollection 2017.


Temporal Metagenomic and Metabolomic Characterization of Fresh Perennial Ryegrass Degradation by Rumen Bacteria.

Mayorga OL, Kingston-Smith AH, Kim EJ, Allison GG, Wilkinson TJ, Hegarty MJ, Theodorou MK, Newbold CJ, Huws SA.

Front Microbiol. 2016 Nov 18;7:1854. eCollection 2016.


MitiGate; an online meta-analysis database for quantification of mitigation strategies for enteric methane emissions.

Veneman JB, Saetnan ER, Clare AJ, Newbold CJ.

Sci Total Environ. 2016 Dec 1;572:1166-1174. doi: 10.1016/j.scitotenv.2016.08.029. Epub 2016 Aug 9.


An Integrated Multi-Omics Approach Reveals the Effects of Supplementing Grass or Grass Hay with Vitamin E on the Rumen Microbiome and Its Function.

Belanche A, Kingston-Smith AH, Newbold CJ.

Front Microbiol. 2016 Jun 10;7:905. doi: 10.3389/fmicb.2016.00905. eCollection 2016.


Terminator Operon Reporter: combining a transcription termination switch with reporter technology for improved gene synthesis and synthetic biology applications.

Zampini M, Mur LA, Rees Stevens P, Pachebat JA, Newbold CJ, Hayes F, Kingston-Smith A.

Sci Rep. 2016 May 25;6:26572. doi: 10.1038/srep26572.


A Metagenomics Approach to Evaluate the Impact of Dietary Supplementation with Ascophyllum nodosum or Laminaria digitata on Rumen Function in Rusitec Fermenters.

Belanche A, Jones E, Parveen I, Newbold CJ.

Front Microbiol. 2016 Mar 10;7:299. doi: 10.3389/fmicb.2016.00299. eCollection 2016.


Effects and mode of action of chitosan and ivy fruit saponins on the microbiome, fermentation and methanogenesis in the rumen simulation technique.

Belanche A, Pinloche E, Preskett D, Newbold CJ.

FEMS Microbiol Ecol. 2016 Jan;92(1). pii: fiv160. doi: 10.1093/femsec/fiv160. Epub 2015 Dec 15.


The Role of Ciliate Protozoa in the Rumen.

Newbold CJ, de la Fuente G, Belanche A, Ramos-Morales E, McEwan NR.

Front Microbiol. 2015 Nov 26;6:1313. doi: 10.3389/fmicb.2015.01313. eCollection 2015. Review.


Manipulating rumen microbiome and fermentation through interventions during early life: a review.

Yáñez-Ruiz DR, Abecia L, Newbold CJ.

Front Microbiol. 2015 Oct 14;6:1133. doi: 10.3389/fmicb.2015.01133. eCollection 2015. Review.


Does Dietary Mitigation of Enteric Methane Production Affect Rumen Function and Animal Productivity in Dairy Cows?

Veneman JB, Muetzel S, Hart KJ, Faulkner CL, Moorby JM, Perdok HB, Newbold CJ.

PLoS One. 2015 Oct 28;10(10):e0140282. doi: 10.1371/journal.pone.0140282. eCollection 2015.


In vitro screening of natural feed additives from crustaceans, diatoms, seaweeds and plant extracts to manipulate rumen fermentation.

Belanche A, Ramos-Morales E, Newbold CJ.

J Sci Food Agric. 2016 Jul;96(9):3069-78. doi: 10.1002/jsfa.7481. Epub 2015 Nov 4.


Response of the rumen archaeal and bacterial populations to anti-methanogenic organosulphur compounds in continuous-culture fermenters.

Martínez-Fernández G, Abecia L, Martín-García AI, Ramos-Morales E, Denman SE, Newbold CJ, Molina-Alcaide E, Yáñez-Ruiz DR.

FEMS Microbiol Ecol. 2015 Aug;91(8):fiv079. doi: 10.1093/femsec/fiv079. Epub 2015 Jul 15.


Population structure and history of the Welsh sheep breeds determined by whole genome genotyping.

Beynon SE, Slavov GT, Farré M, Sunduimijid B, Waddams K, Davies B, Haresign W, Kijas J, MacLeod IM, Newbold CJ, Davies L, Larkin DM.

BMC Genet. 2015 Jun 20;16:65. doi: 10.1186/s12863-015-0216-x.


Effect of progressive inoculation of fauna-free sheep with holotrich protozoa and total-fauna on rumen fermentation, microbial diversity and methane emissions.

Belanche A, de la Fuente G, Newbold CJ.

FEMS Microbiol Ecol. 2015 Mar;91(3). pii: fiu026. doi: 10.1093/femsec/fiu026. Epub 2014 Dec 15.


Isolation and characterization of novel lipases/esterases from a bovine rumen metagenome.

Privé F, Newbold CJ, Kaderbhai NN, Girdwood SG, Golyshina OV, Golyshin PN, Scollan ND, Huws SA.

Appl Microbiol Biotechnol. 2015 Jul;99(13):5475-85. doi: 10.1007/s00253-014-6355-6. Epub 2015 Jan 11.


Study of methanogen communities associated with different rumen protozoal populations.

Belanche A, de la Fuente G, Newbold CJ.

FEMS Microbiol Ecol. 2014 Dec;90(3):663-77. doi: 10.1111/1574-6941.12423. Epub 2014 Sep 29.


Pros and cons of ion-torrent next generation sequencing versus terminal restriction fragment length polymorphism T-RFLP for studying the rumen bacterial community.

de la Fuente G, Belanche A, Girwood SE, Pinloche E, Wilkinson T, Newbold CJ.

PLoS One. 2014 Jul 22;9(7):e101435. doi: 10.1371/journal.pone.0101435. eCollection 2014.


An antimethanogenic nutritional intervention in early life of ruminants modifies ruminal colonization by Archaea.

Abecia L, Waddams KE, Martínez-Fernandez G, Martín-García AI, Ramos-Morales E, Newbold CJ, Yáñez-Ruiz DR.

Archaea. 2014 Apr 6;2014:841463. doi: 10.1155/2014/841463. eCollection 2014.


The symbiotic intestinal ciliates and the evolution of their hosts.

Moon-van der Staay SY, van der Staay GW, Michalowski T, Jouany JP, Pristas P, Javorský P, Kišidayová S, Varadyova Z, McEwan NR, Newbold CJ, van Alen T, de Graaf R, Schmid M, Huynen MA, Hackstein JH.

Eur J Protistol. 2014 Apr;50(2):166-73. doi: 10.1016/j.ejop.2014.01.004. Epub 2014 Jan 31.


Measurement of rumen dry matter and neutral detergent fiber degradability of feeds by Fourier-transform infrared spectroscopy.

Belanche A, Weisbjerg MR, Allison GG, Newbold CJ, Moorby JM.

J Dairy Sci. 2014;97(4):2361-75. doi: 10.3168/jds.2013-7491. Epub 2014 Feb 6.


Characterisation of the faecal bacterial community in adult and elderly horses fed a high fibre, high oil or high starch diet using 454 pyrosequencing.

Dougal K, de la Fuente G, Harris PA, Girdwood SE, Pinloche E, Geor RJ, Nielsen BD, Schott HC 2nd, Elzinga S, Newbold CJ.

PLoS One. 2014 Feb 4;9(2):e87424. doi: 10.1371/journal.pone.0087424. eCollection 2014.


Identification of a core bacterial community within the large intestine of the horse.

Dougal K, de la Fuente G, Harris PA, Girdwood SE, Pinloche E, Newbold CJ.

PLoS One. 2013 Oct 24;8(10):e77660. doi: 10.1371/journal.pone.0077660. eCollection 2013.


Estimation of feed crude protein concentration and rumen degradability by Fourier-transform infrared spectroscopy.

Belanche A, Weisbjerg MR, Allison GG, Newbold CJ, Moorby JM.

J Dairy Sci. 2013;96(12):7867-80. doi: 10.3168/jds.2013-7127. Epub 2013 Oct 4.


Strong stability and host specific bacterial community in faeces of ponies.

Blackmore TM, Dugdale A, Argo CM, Curtis G, Pinloche E, Harris PA, Worgan HJ, Girdwood SE, Dougal K, Newbold CJ, McEwan NR.

PLoS One. 2013 Sep 11;8(9):e75079. doi: 10.1371/journal.pone.0075079. eCollection 2013.


Nutritional intervention in early life to manipulate rumen microbial colonization and methane output by kid goats postweaning.

Abecia L, Martín-García AI, Martínez G, Newbold CJ, Yáñez-Ruiz DR.

J Anim Sci. 2013 Oct;91(10):4832-40. doi: 10.2527/jas.2012-6142. Epub 2013 Aug 21. Erratum in: J Anim Sci.2013 Nov;91(11):5544. Dosage error in article text.


Identification and characterization of three novel lipases belonging to families II and V from Anaerovibrio lipolyticus 5ST.

Privé F, Kaderbhai NN, Girdwood S, Worgan HJ, Pinloche E, Scollan ND, Huws SA, Newbold CJ.

PLoS One. 2013 Aug 12;8(8):e69076. doi: 10.1371/journal.pone.0069076. eCollection 2013.


The effects of a probiotic yeast on the bacterial diversity and population structure in the rumen of cattle.

Pinloche E, McEwan N, Marden JP, Bayourthe C, Auclair E, Newbold CJ.

PLoS One. 2013 Jul 2;8(7):e67824. doi: 10.1371/journal.pone.0067824. Print 2013.


Use of a colon simulation technique to assess the effect of live yeast on fermentation parameters and microbiota of the colon of pig.

Pinloche E, Williams M, D'Inca R, Auclair E, Newbold CJ.

J Anim Sci. 2012 Dec;90 Suppl 4:353-5. doi: 10.2527/jas.53800.


Gene sets for utilization of primary and secondary nutrition supplies in the distal gut of endangered Iberian lynx.

Alcaide M, Messina E, Richter M, Bargiela R, Peplies J, Huws SA, Newbold CJ, Golyshin PN, Simón MA, López G, Yakimov MM, Ferrer M.

PLoS One. 2012;7(12):e51521. doi: 10.1371/journal.pone.0051521. Epub 2012 Dec 12.


Potentiation by metal ions of the efficacy of the ionophores, monensin and tetronasin, towards four species of ruminal bacteria.

Newbold CJ, Wallace RJ, Walker-Bax ND.

FEMS Microbiol Lett. 2013 Jan;338(2):161-7. doi: 10.1111/1574-6968.12044. Epub 2012 Dec 4.

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