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Not all saponins have a greater antiprotozoal activity than their related sapogenins.

Ramos-Morales E, Lyons L, de la Fuente G, Braganca R, Newbold CJ.

FEMS Microbiol Lett. 2019 Jul 4. pii: fnz144. doi: 10.1093/femsle/fnz144. [Epub ahead of print]


Differentially expressed mRNAs, proteins and miRNAs associated to energy metabolism in skeletal muscle of beef cattle identified for low and high residual feed intake.

Carvalho EB, Gionbelli MP, Rodrigues RTS, Bonilha SFM, Newbold CJ, Guimarães SEF, Silva W, Verardo LL, Silva FF, Detmann E, Duarte MS.

BMC Genomics. 2019 Jun 17;20(1):501. doi: 10.1186/s12864-019-5890-z.


Progression of the canonical reference malaria parasite genome from 2002-2019.

Böhme U, Otto TD, Sanders M, Newbold CI, Berriman M.

Version 2. Wellcome Open Res. 2019 May 28 [revised 2019 Jan 1];4:58. doi: 10.12688/wellcomeopenres.15194.2. eCollection 2019.


Using Chronopotentiometry to Better Characterize the Charge Injection Mechanisms of Platinum Electrodes Used in Bionic Devices.

Harris AR, Newbold C, Carter P, Cowan R, Wallace GG.

Front Neurosci. 2019 Apr 24;13:380. doi: 10.3389/fnins.2019.00380. eCollection 2019.


Repeated clinical malaria episodes are associated with modification of the immune system in children.

Bediako Y, Adams R, Reid AJ, Valletta JJ, Ndungu FM, Sodenkamp J, Mwacharo J, Ngoi JM, Kimani D, Kai O, Wambua J, Nyangweso G, de Villiers EP, Sanders M, Lotkowska ME, Lin JW, Manni S, Addy JWG, Recker M, Newbold C, Berriman M, Bejon P, Marsh K, Langhorne J.

BMC Med. 2019 Mar 13;17(1):60. doi: 10.1186/s12916-019-1292-y.


A Multi-Kingdom Study Reveals the Plasticity of the Rumen Microbiota in Response to a Shift From Non-grazing to Grazing Diets in Sheep.

Belanche A, Kingston-Smith AH, Griffith GW, Newbold CJ.

Front Microbiol. 2019 Feb 11;10:122. doi: 10.3389/fmicb.2019.00122. eCollection 2019.


Slight changes in the chemical structure of haemanthamine greatly influence the effect of the derivatives on rumen fermentation in vitro.

Ramos-Morales E, Tibble-Howlings J, Lyons L, Ogbu MO, Murphy PJ, Braganca R, Newbold CJ.

Sci Rep. 2019 Feb 21;9(1):2440. doi: 10.1038/s41598-019-38977-x.


Genome-wide association studies pathway-based meta-analysis for residual feed intake in beef cattle.

Duarte DAS, Newbold CJ, Detmann E, Silva FF, Freitas PHF, Veroneze R, Duarte MS.

Anim Genet. 2019 Apr;50(2):150-153. doi: 10.1111/age.12761. Epub 2019 Jan 15.


The Equine Gastrointestinal Microbiome: Impacts of Age and Obesity.

Morrison PK, Newbold CJ, Jones E, Worgan HJ, Grove-White DH, Dugdale AH, Barfoot C, Harris PA, Argo CM.

Front Microbiol. 2018 Dec 7;9:3017. doi: 10.3389/fmicb.2018.03017. eCollection 2018.


Pre-clinical evaluation of a P. berghei-based whole-sporozoite malaria vaccine candidate.

Mendes AM, Reuling IJ, Andrade CM, Otto TD, Machado M, Teixeira F, Pissarra J, Gonçalves-Rosa N, Bonaparte D, Sinfrónio J, Sanders M, Janse CJ, Khan SM, Newbold CI, Berriman M, Lee CK, Wu Y, Ockenhouse CF, Sauerwein RW, Prudêncio M.

NPJ Vaccines. 2018 Nov 27;3:54. doi: 10.1038/s41541-018-0091-3. eCollection 2018.


Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats.

Abecia L, Martínez-Fernandez G, Waddams K, Martín-García AI, Pinloche E, Creevey CJ, Denman SE, Newbold CJ, Yáñez-Ruiz DR.

Front Microbiol. 2018 Oct 9;9:2227. doi: 10.3389/fmicb.2018.02227. eCollection 2018.


Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future.

Huws SA, Creevey CJ, Oyama LB, Mizrahi I, Denman SE, Popova M, Muñoz-Tamayo R, Forano E, Waters SM, Hess M, Tapio I, Smidt H, Krizsan SJ, Yáñez-Ruiz DR, Belanche A, Guan L, Gruninger RJ, McAllister TA, Newbold CJ, Roehe R, Dewhurst RJ, Snelling TJ, Watson M, Suen G, Hart EH, Kingston-Smith AH, Scollan ND, do Prado RM, Pilau EJ, Mantovani HC, Attwood GT, Edwards JE, McEwan NR, Morrisson S, Mayorga OL, Elliott C, Morgavi DP.

Front Microbiol. 2018 Sep 25;9:2161. doi: 10.3389/fmicb.2018.02161. eCollection 2018. Review.


Protecting against electrode insertion trauma using dexamethasone.

Chambers S, Newbold C, Stathopoulos D, Needham K, Miller C, Risi F, Enke YL, Timbol G, Cowan R.

Cochlear Implants Int. 2019 Jan;20(1):1-11. doi: 10.1080/14670100.2018.1509531. Epub 2018 Aug 20.


Short- and long-term effects of conventional and artificial rearing strategies on the health and performance of growing lambs.

Belanche A, Cooke J, Jones E, Worgan HJ, Newbold CJ.

Animal. 2019 Apr;13(4):740-749. doi: 10.1017/S1751731118002100. Epub 2018 Aug 17.


Effect of dietary fat to starch content on fecal microbiota composition and activity in dogs.

Schauf S, de la Fuente G, Newbold CJ, Salas-Mani A, Torre C, Abecia L, Castrillo C.

J Anim Sci. 2018 Jul 27. doi: 10.1093/jas/sky264. [Epub ahead of print]


Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres.

Otto TD, Böhme U, Sanders M, Reid A, Bruske EI, Duffy CW, Bull PC, Pearson RD, Abdi A, Dimonte S, Stewart LB, Campino S, Kekre M, Hamilton WL, Claessens A, Volkman SK, Ndiaye D, Amambua-Ngwa A, Diakite M, Fairhurst RM, Conway DJ, Franck M, Newbold CI, Berriman M.

Wellcome Open Res. 2018 May 3;3:52. doi: 10.12688/wellcomeopenres.14571.1. eCollection 2018.


Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria.

Otto TD, Gilabert A, Crellen T, Böhme U, Arnathau C, Sanders M, Oyola SO, Okouga AP, Boundenga L, Willaume E, Ngoubangoye B, Moukodoum ND, Paupy C, Durand P, Rougeron V, Ollomo B, Renaud F, Newbold C, Berriman M, Prugnolle F.

Nat Microbiol. 2018 Jun;3(6):687-697. doi: 10.1038/s41564-018-0162-2. Epub 2018 May 21.


Characterisation of the ruminal fermentation and microbiome in lambs supplemented with hydrolysable and condensed tannins.

Salami SA, Valenti B, Bella M, O'Grady MN, Luciano G, Kerry JP, Jones E, Priolo A, Newbold CJ.

FEMS Microbiol Ecol. 2018 May 1;94(5). doi: 10.1093/femsec/fiy061.


Measuring the effective area and charge density of platinum electrodes for bionic devices.

Harris AR, Newbold C, Carter P, Cowan R, Wallace GG.

J Neural Eng. 2018 Aug;15(4):046015. doi: 10.1088/1741-2552/aaba8b. Epub 2018 Mar 29.


Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals.

Böhme U, Otto TD, Cotton JA, Steinbiss S, Sanders M, Oyola SO, Nicot A, Gandon S, Patra KP, Herd C, Bushell E, Modrzynska KK, Billker O, Vinetz JM, Rivero A, Newbold CI, Berriman M.

Genome Res. 2018 Apr;28(4):547-560. doi: 10.1101/gr.218123.116. Epub 2018 Mar 2.


In silico guided reconstruction and analysis of ICAM-1-binding var genes from Plasmodium falciparum.

Carrington E, Otto TD, Szestak T, Lennartz F, Higgins MK, Newbold CI, Craig AG.

Sci Rep. 2018 Feb 19;8(1):3282. doi: 10.1038/s41598-018-21591-8.


The effect of an isoflavonid-rich liquorice extract on fermentation, methanogenesis and the microbiome in the rumen simulation technique.

Ramos-Morales E, Rossi G, Cattin M, Jones E, Braganca R, Newbold CJ.

FEMS Microbiol Ecol. 2018 Mar 1;94(3). doi: 10.1093/femsec/fiy009.


Editorial: Engineering Rumen Metabolic Pathways: Where We Are, and Where Are We Heading.

Ungerfeld EM, Newbold CJ.

Front Microbiol. 2018 Jan 4;8:2627. doi: 10.3389/fmicb.2017.02627. eCollection 2017. No abstract available.


Intraoperative force and electrocochleography measurements in an animal model of cochlear implantation.

Lo J, Bester C, Collins A, Newbold C, Hampson A, Chambers S, Eastwood H, O'Leary S.

Hear Res. 2017 Nov 9. pii: S0378-5955(17)30383-0. doi: 10.1016/j.heares.2017.11.001. [Epub ahead of print]


Electrode Impedance Fluctuations as a Biomarker for Inner Ear Pathology After Cochlear Implantation.

Choi J, Payne MR, Campbell LJ, Bester CW, Newbold C, Eastwood H, O'Leary SJ.

Otol Neurotol. 2017 Dec;38(10):1433-1439. doi: 10.1097/MAO.0000000000001589.


Improving the antiprotozoal effect of saponins in the rumen by combination with glycosidase inhibiting iminosugars or by modification of their chemical structure.

Ramos-Morales E, de la Fuente G, Nash RJ, Braganca R, Duval S, Bouillon ME, Lahmann M, Newbold CJ.

PLoS One. 2017 Sep 8;12(9):e0184517. doi: 10.1371/journal.pone.0184517. eCollection 2017.


Changes in the Total Fecal Bacterial Population in Individual Horses Maintained on a Restricted Diet Over 6 Weeks.

Dougal K, Harris PA, Girdwood SE, Creevey CJ, Curtis GC, Barfoot CF, Argo CM, Newbold CJ.

Front Microbiol. 2017 Aug 11;8:1502. doi: 10.3389/fmicb.2017.01502. eCollection 2017.


A Systems Biology Approach Reveals Differences in the Dynamics of Colonization and Degradation of Grass vs. Hay by Rumen Microbes with Minor Effects of Vitamin E Supplementation.

Belanche A, Newbold CJ, Lin W, Rees Stevens P, Kingston-Smith AH.

Front Microbiol. 2017 Aug 3;8:1456. doi: 10.3389/fmicb.2017.01456. eCollection 2017.


Natural and artificial feeding management before weaning promote different rumen microbial colonization but not differences in gene expression levels at the rumen epithelium of newborn goats.

Abecia L, Jiménez E, Martínez-Fernandez G, Martín-García AI, Ramos-Morales E, Pinloche E, Denman SE, Newbold CJ, Yáñez-Ruiz DR.

PLoS One. 2017 Aug 16;12(8):e0182235. doi: 10.1371/journal.pone.0182235. eCollection 2017.


Functional Resilience and Response to a Dietary Additive (Kefir) in Models of Foregut and Hindgut Microbial Fermentation In Vitro.

de la Fuente G, Jones E, Jones S, Newbold CJ.

Front Microbiol. 2017 Jun 28;8:1194. doi: 10.3389/fmicb.2017.01194. eCollection 2017.


Genomic Characterization of Recrudescent Plasmodium malariae after Treatment with Artemether/Lumefantrine.

Rutledge GG, Marr I, Huang GKL, Auburn S, Marfurt J, Sanders M, White NJ, Berriman M, Newbold CI, Anstey NM, Otto TD, Price RN.

Emerg Infect Dis. 2017 Aug;23(8):1300-1307. doi: 10.3201/eid2308.161582. Epub 2017 Aug 15.


Antiprotozoal Effect of Saponins in the Rumen Can Be Enhanced by Chemical Modifications in Their Structure.

Ramos-Morales E, de la Fuente G, Duval S, Wehrli C, Bouillon M, Lahmann M, Preskett D, Braganca R, Newbold CJ.

Front Microbiol. 2017 Mar 16;8:399. doi: 10.3389/fmicb.2017.00399. eCollection 2017.


Antibody-independent mechanisms regulate the establishment of chronic Plasmodium infection.

Brugat T, Reid AJ, Lin J, Cunningham D, Tumwine I, Kushinga G, McLaughlin S, Spence P, Böhme U, Sanders M, Conteh S, Bushell E, Metcalf T, Billker O, Duffy PE, Newbold C, Berriman M, Langhorne J.

Nat Microbiol. 2017 Feb 6;2:16276. doi: 10.1038/nmicrobiol.2016.276.


Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution.

Rutledge GG, Böhme U, Sanders M, Reid AJ, Cotton JA, Maiga-Ascofare O, Djimdé AA, Apinjoh TO, Amenga-Etego L, Manske M, Barnwell JW, Renaud F, Ollomo B, Prugnolle F, Anstey NM, Auburn S, Price RN, McCarthy JS, Kwiatkowski DP, Newbold CI, Berriman M, Otto TD.

Nature. 2017 Feb 2;542(7639):101-104. doi: 10.1038/nature21038. Epub 2017 Jan 25.


A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes.

Auburn S, Böhme U, Steinbiss S, Trimarsanto H, Hostetler J, Sanders M, Gao Q, Nosten F, Newbold CI, Berriman M, Price RN, Otto TD.

Wellcome Open Res. 2016 Nov 15;1:4. doi: 10.12688/wellcomeopenres.9876.1.


Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification.

Oyola SO, Ariani CV, Hamilton WL, Kekre M, Amenga-Etego LN, Ghansah A, Rutledge GG, Redmond S, Manske M, Jyothi D, Jacob CG, Otto TD, Rockett K, Newbold CI, Berriman M, Kwiatkowski DP.

Malar J. 2016 Dec 20;15(1):597. doi: 10.1186/s12936-016-1641-7.


Temporal Metagenomic and Metabolomic Characterization of Fresh Perennial Ryegrass Degradation by Rumen Bacteria.

Mayorga OL, Kingston-Smith AH, Kim EJ, Allison GG, Wilkinson TJ, Hegarty MJ, Theodorou MK, Newbold CJ, Huws SA.

Front Microbiol. 2016 Nov 18;7:1854. eCollection 2016.


MitiGate; an online meta-analysis database for quantification of mitigation strategies for enteric methane emissions.

Veneman JB, Saetnan ER, Clare AJ, Newbold CJ.

Sci Total Environ. 2016 Dec 1;572:1166-1174. doi: 10.1016/j.scitotenv.2016.08.029. Epub 2016 Aug 9.


An Integrated Multi-Omics Approach Reveals the Effects of Supplementing Grass or Grass Hay with Vitamin E on the Rumen Microbiome and Its Function.

Belanche A, Kingston-Smith AH, Newbold CJ.

Front Microbiol. 2016 Jun 10;7:905. doi: 10.3389/fmicb.2016.00905. eCollection 2016.


Terminator Operon Reporter: combining a transcription termination switch with reporter technology for improved gene synthesis and synthetic biology applications.

Zampini M, Mur LA, Rees Stevens P, Pachebat JA, Newbold CJ, Hayes F, Kingston-Smith A.

Sci Rep. 2016 May 25;6:26572. doi: 10.1038/srep26572.


A Metagenomics Approach to Evaluate the Impact of Dietary Supplementation with Ascophyllum nodosum or Laminaria digitata on Rumen Function in Rusitec Fermenters.

Belanche A, Jones E, Parveen I, Newbold CJ.

Front Microbiol. 2016 Mar 10;7:299. doi: 10.3389/fmicb.2016.00299. eCollection 2016.


Effects and mode of action of chitosan and ivy fruit saponins on the microbiome, fermentation and methanogenesis in the rumen simulation technique.

Belanche A, Pinloche E, Preskett D, Newbold CJ.

FEMS Microbiol Ecol. 2016 Jan;92(1). pii: fiv160. doi: 10.1093/femsec/fiv160. Epub 2015 Dec 15.


The Role of Ciliate Protozoa in the Rumen.

Newbold CJ, de la Fuente G, Belanche A, Ramos-Morales E, McEwan NR.

Front Microbiol. 2015 Nov 26;6:1313. doi: 10.3389/fmicb.2015.01313. eCollection 2015. Review.


Manipulating rumen microbiome and fermentation through interventions during early life: a review.

Yáñez-Ruiz DR, Abecia L, Newbold CJ.

Front Microbiol. 2015 Oct 14;6:1133. doi: 10.3389/fmicb.2015.01133. eCollection 2015. Review.


Does Dietary Mitigation of Enteric Methane Production Affect Rumen Function and Animal Productivity in Dairy Cows?

Veneman JB, Muetzel S, Hart KJ, Faulkner CL, Moorby JM, Perdok HB, Newbold CJ.

PLoS One. 2015 Oct 28;10(10):e0140282. doi: 10.1371/journal.pone.0140282. eCollection 2015.


In vitro screening of natural feed additives from crustaceans, diatoms, seaweeds and plant extracts to manipulate rumen fermentation.

Belanche A, Ramos-Morales E, Newbold CJ.

J Sci Food Agric. 2016 Jul;96(9):3069-78. doi: 10.1002/jsfa.7481. Epub 2015 Nov 4.


Response of the rumen archaeal and bacterial populations to anti-methanogenic organosulphur compounds in continuous-culture fermenters.

Martínez-Fernández G, Abecia L, Martín-García AI, Ramos-Morales E, Denman SE, Newbold CJ, Molina-Alcaide E, Yáñez-Ruiz DR.

FEMS Microbiol Ecol. 2015 Aug;91(8):fiv079. doi: 10.1093/femsec/fiv079. Epub 2015 Jul 15.


Population structure and history of the Welsh sheep breeds determined by whole genome genotyping.

Beynon SE, Slavov GT, Farré M, Sunduimijid B, Waddams K, Davies B, Haresign W, Kijas J, MacLeod IM, Newbold CJ, Davies L, Larkin DM.

BMC Genet. 2015 Jun 20;16:65. doi: 10.1186/s12863-015-0216-x.


Long-term electrode impedance changes and failure prevalence in cochlear implants.

Newbold C, Risi F, Hollow R, Yusof Y, Dowell R.

Int J Audiol. 2015 Jul;54(7):453-60. doi: 10.3109/14992027.2014.1001076. Epub 2015 Mar 13.


Effect of progressive inoculation of fauna-free sheep with holotrich protozoa and total-fauna on rumen fermentation, microbial diversity and methane emissions.

Belanche A, de la Fuente G, Newbold CJ.

FEMS Microbiol Ecol. 2015 Mar;91(3). pii: fiu026. doi: 10.1093/femsec/fiu026. Epub 2014 Dec 15.

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