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Intestinal Macromolecular Transport Supporting Adaptive Immunity.

Kulkarni DH, Newberry RD.

Cell Mol Gastroenterol Hepatol. 2019 Jan 30. pii: S2352-345X(19)30004-9. doi: 10.1016/j.jcmgh.2019.01.003. [Epub ahead of print] Review.


Novel Genetic Risk Variants Can Predict Anti-TNF Agent Response in Patients With Inflammatory Bowel Disease.

Wang MH, Friton JJ, Raffals LE, Leighton JA, Pasha SF, Picco MF, Cushing KC, Monroe K, Nix BD, Newberry RD, Faubion WA.

J Crohns Colitis. 2019 Jan 21. doi: 10.1093/ecco-jcc/jjz017. [Epub ahead of print]


Inherited nongenetic influences on the gut microbiome and immune system.

Knoop KA, Holtz LR, Newberry RD.

Birth Defects Res. 2018 Dec 1;110(20):1494-1503. doi: 10.1002/bdr2.1436. Review.


Predicting Risk of Postoperative Disease Recurrence in Crohn's Disease: Patients With Indolent Crohn's Disease Have Distinct Whole Transcriptome Profiles at the Time of First Surgery.

Cushing KC, Mclean R, McDonald KG, Gustafsson JK, Knoop KA, Kulkarni DH, Sartor RB, Newberry RD.

Inflamm Bowel Dis. 2019 Jan 1;25(1):180-193. doi: 10.1093/ibd/izy228.


Goblet cells: multifaceted players in immunity at mucosal surfaces.

Knoop KA, Newberry RD.

Mucosal Immunol. 2018 Nov;11(6):1551-1557. doi: 10.1038/s41385-018-0039-y. Epub 2018 Jun 4. Review.


The Tumor Necrosis Factor Superfamily Member RANKL Suppresses Effector Cytokine Production in Group 3 Innate Lymphoid Cells.

Bando JK, Gilfillan S, Song C, McDonald KG, Huang SC, Newberry RD, Kobayashi Y, Allan DSJ, Carlyle JR, Cella M, Colonna M.

Immunity. 2018 Jun 19;48(6):1208-1219.e4. doi: 10.1016/j.immuni.2018.04.012. Epub 2018 May 29.


Goblet cell associated antigen passages are inhibited during Salmonella typhimurium infection to prevent pathogen dissemination and limit responses to dietary antigens.

Kulkarni DH, McDonald KG, Knoop KA, Gustafsson JK, Kozlowski KM, Hunstad DA, Miller MJ, Newberry RD.

Mucosal Immunol. 2018 Jul;11(4):1103-1113. doi: 10.1038/s41385-018-0007-6. Epub 2018 Feb 14.


Microbial antigen encounter during a preweaning interval is critical for tolerance to gut bacteria.

Knoop KA, Gustafsson JK, McDonald KG, Kulkarni DH, Coughlin PE, McCrate S, Kim D, Hsieh CS, Hogan SP, Elson CO, Tarr PI, Newberry RD.

Sci Immunol. 2017 Dec 15;2(18). pii: eaao1314. doi: 10.1126/sciimmunol.aao1314.


Genetic risk factors for perception of symptoms in GERD: an observational cohort study.

Patel A, Hasak S, Nix BD, Sayuk GS, Newberry RD, Gyawali CP.

Aliment Pharmacol Ther. 2018 Jan;47(2):289-297. doi: 10.1111/apt.14414. Epub 2017 Nov 17.


CCR6 promotes steady-state mononuclear phagocyte association with the intestinal epithelium, imprinting and immune surveillance.

McDonald KG, Wheeler LW, McDole JR, Joerger S, Gustafsson JK, Kulkarni DH, Knoop KA, Williams IR, Miller MJ, Newberry RD.

Immunology. 2017 Dec;152(4):613-627. doi: 10.1111/imm.12801. Epub 2017 Aug 30.


Helicobacter species are potent drivers of colonic T cell responses in homeostasis and inflammation.

Chai JN, Peng Y, Rengarajan S, Solomon BD, Ai TL, Shen Z, Perry JSA, Knoop KA, Tanoue T, Narushima S, Honda K, Elson CO, Newberry RD, Stappenbeck TS, Kau AL, Peterson DA, Fox JG, Hsieh CS.

Sci Immunol. 2017 Jul 21;2(13). pii: eaal5068. doi: 10.1126/sciimmunol.aal5068.


Antibiotics promote the sampling of luminal antigens and bacteria via colonic goblet cell associated antigen passages.

Knoop KA, Gustafsson JK, McDonald KG, Kulkarni DH, Kassel R, Newberry RD.

Gut Microbes. 2017 Jul 4;8(4):400-411. doi: 10.1080/19490976.2017.1299846. Epub 2017 Mar 7.


Genome-Wide Association Study Identifies African-Specific Susceptibility Loci in African Americans With Inflammatory Bowel Disease.

Brant SR, Okou DT, Simpson CL, Cutler DJ, Haritunians T, Bradfield JP, Chopra P, Prince J, Begum F, Kumar A, Huang C, Venkateswaran S, Datta LW, Wei Z, Thomas K, Herrinton LJ, Klapproth JA, Quiros AJ, Seminerio J, Liu Z, Alexander JS, Baldassano RN, Dudley-Brown S, Cross RK, Dassopoulos T, Denson LA, Dhere TA, Dryden GW, Hanson JS, Hou JK, Hussain SZ, Hyams JS, Isaacs KL, Kader H, Kappelman MD, Katz J, Kellermayer R, Kirschner BS, Kuemmerle JF, Kwon JH, Lazarev M, Li E, Mack D, Mannon P, Moulton DE, Newberry RD, Osuntokun BO, Patel AS, Saeed SA, Targan SR, Valentine JF, Wang MH, Zonca M, Rioux JD, Duerr RH, Silverberg MS, Cho JH, Hakonarson H, Zwick ME, McGovern DP, Kugathasan S.

Gastroenterology. 2017 Jan;152(1):206-217.e2. doi: 10.1053/j.gastro.2016.09.032. Epub 2016 Sep 28.


Characterization of candidate genes in inflammatory bowel disease-associated risk loci.

Peloquin JM, Goel G, Kong L, Huang H, Haritunians T, Sartor RB, Daly MJ, Newberry RD, McGovern DP, Yajnik V, Lira SA, Xavier RJ.

JCI Insight. 2016 Aug 18;1(13):e87899. doi: 10.1172/jci.insight.87899.


Contribution of Mesenteric Lymph Nodes and GALT to the Intestinal Foxp3+ Regulatory T-Cell Compartment.

Geem D, Ngo V, Harusato A, Chassaing B, Gewirtz AT, Newberry RD, Denning TL.

Cell Mol Gastroenterol Hepatol. 2016 May;2(3):274-280.


Unique and redundant functions of NKp46+ ILC3s in models of intestinal inflammation.

Song C, Lee JS, Gilfillan S, Robinette ML, Newberry RD, Stappenbeck TS, Mack M, Cella M, Colonna M.

J Exp Med. 2015 Oct 19;212(11):1869-82. doi: 10.1084/jem.20151403. Epub 2015 Oct 12.


Antibiotics promote inflammation through the translocation of native commensal colonic bacteria.

Knoop KA, McDonald KG, Kulkarni DH, Newberry RD.

Gut. 2016 Jul;65(7):1100-9. doi: 10.1136/gutjnl-2014-309059. Epub 2015 Jun 4.


Microbial sensing by goblet cells controls immune surveillance of luminal antigens in the colon.

Knoop KA, McDonald KG, McCrate S, McDole JR, Newberry RD.

Mucosal Immunol. 2015 Jan;8(1):198-210. doi: 10.1038/mi.2014.58. Epub 2014 Jul 9.


Specific microbiota-induced intestinal Th17 differentiation requires MHC class II but not GALT and mesenteric lymph nodes.

Geem D, Medina-Contreras O, McBride M, Newberry RD, Koni PA, Denning TL.

J Immunol. 2014 Jul 1;193(1):431-8. doi: 10.4049/jimmunol.1303167. Epub 2014 Jun 4.


CRTAM controls residency of gut CD4+CD8+ T cells in the steady state and maintenance of gut CD4+ Th17 during parasitic infection.

Cortez VS, Cervantes-Barragan L, Song C, Gilfillan S, McDonald KG, Tussiwand R, Edelson BT, Murakami Y, Murphy KM, Newberry RD, Sibley LD, Colonna M.

J Exp Med. 2014 Apr 7;211(4):623-33. doi: 10.1084/jem.20130904. Epub 2014 Mar 31.


Mind the GAPs: insights into intestinal epithelial barrier maintenance and luminal antigen delivery.

Miller MJ, Knoop KA, Newberry RD.

Mucosal Immunol. 2014 May;7(3):452-4. doi: 10.1038/mi.2014.4. Epub 2014 Jan 29. No abstract available.


Identification of a functional TPH1 polymorphism associated with irritable bowel syndrome bowel habit subtypes.

Grasberger H, Chang L, Shih W, Presson AP, Sayuk GS, Newberry RD, Karagiannides I, Pothoulakis C, Mayer E, Merchant JL.

Am J Gastroenterol. 2013 Nov;108(11):1766-74. doi: 10.1038/ajg.2013.304. Epub 2013 Sep 24.


Notch2-dependent classical dendritic cells orchestrate intestinal immunity to attaching-and-effacing bacterial pathogens.

Satpathy AT, Briseño CG, Lee JS, Ng D, Manieri NA, Kc W, Wu X, Thomas SR, Lee WL, Turkoz M, McDonald KG, Meredith MM, Song C, Guidos CJ, Newberry RD, Ouyang W, Murphy TL, Stappenbeck TS, Gommerman JL, Nussenzweig MC, Colonna M, Kopan R, Murphy KM.

Nat Immunol. 2013 Sep;14(9):937-48. doi: 10.1038/ni.2679. Epub 2013 Aug 4.


Genetic variation in the beta-2 adrenergic receptor (ADRB2) predicts functional gastrointestinal diagnoses and poorer health-related quality of life.

Kushnir VM, Cassell B, Gyawali CP, Newberry RD, Kibe P, Nix BD, Sabzpoushan A, Kanuri ND, Sayuk GS.

Aliment Pharmacol Ther. 2013 Aug;38(3):313-23. doi: 10.1111/apt.12378. Epub 2013 Jun 20.


IDO1 metabolites activate β-catenin signaling to promote cancer cell proliferation and colon tumorigenesis in mice.

Thaker AI, Rao MS, Bishnupuri KS, Kerr TA, Foster L, Marinshaw JM, Newberry RD, Stenson WF, Ciorba MA.

Gastroenterology. 2013 Aug;145(2):416-25.e1-4. doi: 10.1053/j.gastro.2013.05.002. Epub 2013 May 10.


Intraepithelial type 1 innate lymphoid cells are a unique subset of IL-12- and IL-15-responsive IFN-γ-producing cells.

Fuchs A, Vermi W, Lee JS, Lonardi S, Gilfillan S, Newberry RD, Cella M, Colonna M.

Immunity. 2013 Apr 18;38(4):769-81. doi: 10.1016/j.immuni.2013.02.010. Epub 2013 Feb 28.


Transepithelial antigen delivery in the small intestine: different paths, different outcomes.

Knoop KA, Miller MJ, Newberry RD.

Curr Opin Gastroenterol. 2013 Mar;29(2):112-8. doi: 10.1097/MOG.0b013e32835cf1cd. Review.


Host genes related to paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition.

Zhang T, DeSimone RA, Jiao X, Rohlf FJ, Zhu W, Gong QQ, Hunt SR, Dassopoulos T, Newberry RD, Sodergren E, Weinstock G, Robertson CE, Frank DN, Li E.

PLoS One. 2012;7(6):e30044. doi: 10.1371/journal.pone.0030044. Epub 2012 Jun 13.


An ileal Crohn's disease gene signature based on whole human genome expression profiles of disease unaffected ileal mucosal biopsies.

Zhang T, Song B, Zhu W, Xu X, Gong QQ, Morando C, Dassopoulos T, Newberry RD, Hunt SR, Li E.

PLoS One. 2012;7(5):e37139. doi: 10.1371/journal.pone.0037139. Epub 2012 May 14.


Isolated Lymphoid Follicles are Dynamic Reservoirs for the Induction of Intestinal IgA.

Knoop KA, Newberry RD.

Front Immunol. 2012 May 4;3:84. doi: 10.3389/fimmu.2012.00084. eCollection 2012.


Goblet cells deliver luminal antigen to CD103+ dendritic cells in the small intestine.

McDole JR, Wheeler LW, McDonald KG, Wang B, Konjufca V, Knoop KA, Newberry RD, Miller MJ.

Nature. 2012 Mar 14;483(7389):345-9. doi: 10.1038/nature10863.


Epithelial expression of the cytosolic retinoid chaperone cellular retinol binding protein II is essential for in vivo imprinting of local gut dendritic cells by lumenal retinoids.

McDonald KG, Leach MR, Brooke KW, Wang C, Wheeler LW, Hanly EK, Rowley CW, Levin MS, Wagner M, Li E, Newberry RD.

Am J Pathol. 2012 Mar;180(3):984-97. doi: 10.1016/j.ajpath.2011.11.009. Epub 2012 Jan 2.


AHR drives the development of gut ILC22 cells and postnatal lymphoid tissues via pathways dependent on and independent of Notch.

Lee JS, Cella M, McDonald KG, Garlanda C, Kennedy GD, Nukaya M, Mantovani A, Kopan R, Bradfield CA, Newberry RD, Colonna M.

Nat Immunol. 2011 Nov 20;13(2):144-51. doi: 10.1038/ni.2187.


Distinct developmental requirements for isolated lymphoid follicle formation in the small and large intestine: RANKL is essential only in the small intestine.

Knoop KA, Butler BR, Kumar N, Newberry RD, Williams IR.

Am J Pathol. 2011 Oct;179(4):1861-71. doi: 10.1016/j.ajpath.2011.06.004. Epub 2011 Aug 18.


Aging impacts isolated lymphoid follicle development and function.

McDonald KG, Leach MR, Huang C, Wang C, Newberry RD.

Immun Ageing. 2011 Jan 7;8(1):1. doi: 10.1186/1742-4933-8-1.


Microanatomy of the intestinal lymphatic system.

Miller MJ, McDole JR, Newberry RD.

Ann N Y Acad Sci. 2010 Oct;1207 Suppl 1:E21-8. doi: 10.1111/j.1749-6632.2010.05708.x.


Effect of α4β7 blockade on intestinal lymphocyte subsets and lymphoid tissue development.

Wang C, Hanly EK, Wheeler LW, Kaur M, McDonald KG, Newberry RD.

Inflamm Bowel Dis. 2010 Oct;16(10):1751-62. doi: 10.1002/ibd.21266.


Patients with late-adult-onset ulcerative colitis have better outcomes than those with early onset disease.

Ha CY, Newberry RD, Stone CD, Ciorba MA.

Clin Gastroenterol Hepatol. 2010 Aug;8(8):682-687.e1. doi: 10.1016/j.cgh.2010.03.022. Epub 2010 Apr 2.


Dendritic cells produce CXCL13 and participate in the development of murine small intestine lymphoid tissues.

McDonald KG, McDonough JS, Dieckgraefe BK, Newberry RD.

Am J Pathol. 2010 May;176(5):2367-77. doi: 10.2353/ajpath.2010.090723. Epub 2010 Mar 19.


Induction of IDO-1 by immunostimulatory DNA limits severity of experimental colitis.

Ciorba MA, Bettonville EE, McDonald KG, Metz R, Prendergast GC, Newberry RD, Stenson WF.

J Immunol. 2010 Apr 1;184(7):3907-16. doi: 10.4049/jimmunol.0900291. Epub 2010 Feb 24.


Villous B cells of the small intestine are specialized for invariant NK T cell dependence.

Velázquez P, Wei B, McPherson M, Mendoza LM, Nguyen SL, Turovskaya O, Kronenberg M, Huang TT, Schrage M, Lobato LN, Fujiwara D, Brewer S, Arditi M, Cheng G, Sartor RB, Newberry RD, Braun J.

J Immunol. 2008 Apr 1;180(7):4629-38.


Intestinal lymphoid tissues: is variety an asset or a liability?

Newberry RD.

Curr Opin Gastroenterol. 2008 Mar;24(2):121-8. doi: 10.1097/MOG.0b013e3282f4906d. Review.


Deletion of the AU-rich RNA binding protein Apobec-1 reduces intestinal tumor burden in Apc(min) mice.

Blanc V, Henderson JO, Newberry RD, Xie Y, Cho SJ, Newberry EP, Kennedy S, Rubin DC, Wang HL, Luo J, Davidson NO.

Cancer Res. 2007 Sep 15;67(18):8565-73.


Whole-mount techniques to evaluate subepithelial cellular populations in the adult mouse intestine.

McDonald KG, Newberry RD.

Biotechniques. 2007 Jul;43(1):50, 52, 54 passim. No abstract available.


CC chemokine receptor 6 expression by B lymphocytes is essential for the development of isolated lymphoid follicles.

McDonald KG, McDonough JS, Wang C, Kucharzik T, Williams IR, Newberry RD.

Am J Pathol. 2007 Apr;170(4):1229-40.


Murine isolated lymphoid follicles contain follicular B lymphocytes with a mucosal phenotype.

Wang C, McDonald KG, McDonough JS, Newberry RD.

Am J Physiol Gastrointest Liver Physiol. 2006 Oct;291(4):G595-604. Epub 2006 Jun 15.


PEGylated murine Granulocyte-macrophage colony-stimulating factor: production, purification, and characterization.

Sainathan SK, Tu L, Bishnupuri KS, Han M, Li A, Newberry RD, McDonald KG, Crimmins DL, Houchen C, Anant S, Dieckgraefe BK.

Protein Expr Purif. 2005 Dec;44(2):94-103. Epub 2005 Sep 20.


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