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Items: 7

1.

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience.

Griss J, Jones AR, Sachsenberg T, Walzer M, Gatto L, Hartler J, Thallinger GG, Salek RM, Steinbeck C, Neuhauser N, Cox J, Neumann S, Fan J, Reisinger F, Xu QW, Del Toro N, Pérez-Riverol Y, Ghali F, Bandeira N, Xenarios I, Kohlbacher O, Vizcaíno JA, Hermjakob H.

Mol Cell Proteomics. 2014 Oct;13(10):2765-75. doi: 10.1074/mcp.O113.036681. Epub 2014 Jun 30.

2.

High performance computational analysis of large-scale proteome data sets to assess incremental contribution to coverage of the human genome.

Neuhauser N, Nagaraj N, McHardy P, Zanivan S, Scheltema R, Cox J, Mann M.

J Proteome Res. 2013 Jun 7;12(6):2858-68. doi: 10.1021/pr400181q. Epub 2013 May 6.

3.

A systematic investigation into the nature of tryptic HCD spectra.

Michalski A, Neuhauser N, Cox J, Mann M.

J Proteome Res. 2012 Nov 2;11(11):5479-91. doi: 10.1021/pr3007045. Epub 2012 Oct 10.

PMID:
22998608
4.

Expert system for computer-assisted annotation of MS/MS spectra.

Neuhauser N, Michalski A, Cox J, Mann M.

Mol Cell Proteomics. 2012 Nov;11(11):1500-9. doi: 10.1074/mcp.M112.020271. Epub 2012 Aug 10.

5.

System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap.

Nagaraj N, Kulak NA, Cox J, Neuhauser N, Mayr K, Hoerning O, Vorm O, Mann M.

Mol Cell Proteomics. 2012 Mar;11(3):M111.013722. doi: 10.1074/mcp.M111.013722. Epub 2011 Oct 20.

6.

Andromeda: a peptide search engine integrated into the MaxQuant environment.

Cox J, Neuhauser N, Michalski A, Scheltema RA, Olsen JV, Mann M.

J Proteome Res. 2011 Apr 1;10(4):1794-805. doi: 10.1021/pr101065j. Epub 2011 Feb 22.

PMID:
21254760
7.

High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast.

Gnad F, de Godoy LM, Cox J, Neuhauser N, Ren S, Olsen JV, Mann M.

Proteomics. 2009 Oct;9(20):4642-52. doi: 10.1002/pmic.200900144.

PMID:
19795423

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