Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 82

1.

Nascent RNA and the Coordination of Splicing with Transcription.

Neugebauer KM.

Cold Spring Harb Perspect Biol. 2019 Aug 1;11(8). pii: a032227. doi: 10.1101/cshperspect.a032227. Review.

PMID:
31371351
2.

Uncoupling of nucleo-cytoplasmic RNA export and localization during stress.

Hochberg-Laufer H, Schwed-Gross A, Neugebauer KM, Shav-Tal Y.

Nucleic Acids Res. 2019 May 21;47(9):4778-4797. doi: 10.1093/nar/gkz168.

3.

Heat Oscillations Driven by the Embryonic Cell Cycle Reveal the Energetic Costs of Signaling.

Rodenfels J, Neugebauer KM, Howard J.

Dev Cell. 2019 Mar 11;48(5):646-658.e6. doi: 10.1016/j.devcel.2018.12.024. Epub 2019 Jan 31.

PMID:
30713074
4.

Blood Relatives: Splicing Mechanisms underlying Erythropoiesis in Health and Disease.

Reimer KA, Neugebauer KM.

F1000Res. 2018 Aug 30;7. pii: F1000 Faculty Rev-1364. doi: 10.12688/f1000research.15442.1. eCollection 2018. Review.

5.

Long-read sequencing of nascent RNA reveals coupling among RNA processing events.

Herzel L, Straube K, Neugebauer KM.

Genome Res. 2018 Jul;28(7):1008-1019. doi: 10.1101/gr.232025.117. Epub 2018 Jun 14.

6.

Dynamics and Function of Nuclear Bodies during Embryogenesis.

Arias Escayola D, Neugebauer KM.

Biochemistry. 2018 May 1;57(17):2462-2469. doi: 10.1021/acs.biochem.7b01262. Epub 2018 Mar 7. Review.

PMID:
29473743
7.

RNA tales - how embryos read and discard messages from mom.

Despic V, Neugebauer KM.

J Cell Sci. 2018 Mar 1;131(5). pii: jcs201996. doi: 10.1242/jcs.201996. Review.

8.

Fractionation iCLIP detects persistent SR protein binding to conserved, retained introns in chromatin, nucleoplasm and cytoplasm.

Brugiolo M, Botti V, Liu N, Müller-McNicoll M, Neugebauer KM.

Nucleic Acids Res. 2017 Oct 13;45(18):10452-10465. doi: 10.1093/nar/gkx671.

9.

Splicing and transcription touch base: co-transcriptional spliceosome assembly and function.

Herzel L, Ottoz DSM, Alpert T, Neugebauer KM.

Nat Rev Mol Cell Biol. 2017 Oct;18(10):637-650. doi: 10.1038/nrm.2017.63. Epub 2017 Aug 9. Review.

10.

Analysis of RNA-protein interactions in vertebrate embryos using UV crosslinking approaches.

Despic V, Dejung M, Butter F, Neugebauer KM.

Methods. 2017 Aug 15;126:44-53. doi: 10.1016/j.ymeth.2017.07.013. Epub 2017 Jul 19.

PMID:
28734934
11.

Cellular differentiation state modulates the mRNA export activity of SR proteins.

Botti V, McNicoll F, Steiner MC, Richter FM, Solovyeva A, Wegener M, Schwich OD, Poser I, Zarnack K, Wittig I, Neugebauer KM, Müller-McNicoll M.

J Cell Biol. 2017 Jul 3;216(7):1993-2009. doi: 10.1083/jcb.201610051. Epub 2017 Jun 7.

12.

Special focus on the Cajal Body.

Neugebauer KM.

RNA Biol. 2017 Jun 3;14(6):669-670. doi: 10.1080/15476286.2017.1316928. No abstract available.

13.

Purification of Zygotically Transcribed RNA through Metabolic Labeling of Early Zebrafish Embryos.

Heyn P, Neugebauer KM.

Methods Mol Biol. 2017;1605:121-131. doi: 10.1007/978-1-4939-6988-3_8.

PMID:
28456961
14.

Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition.

Despic V, Dejung M, Gu M, Krishnan J, Zhang J, Herzel L, Straube K, Gerstein MB, Butter F, Neugebauer KM.

Genome Res. 2017 Jul;27(7):1184-1194. doi: 10.1101/gr.215954.116. Epub 2017 Apr 5.

15.

Perfect timing: splicing and transcription rates in living cells.

Alpert T, Herzel L, Neugebauer KM.

Wiley Interdiscip Rev RNA. 2017 Mar;8(2). doi: 10.1002/wrna.1401. Epub 2016 Nov 21. Review.

16.

Activation of transcription enforces the formation of distinct nuclear bodies in zebrafish embryos.

Heyn P, Salmonowicz H, Rodenfels J, Neugebauer KM.

RNA Biol. 2017 Jun 3;14(6):752-760. doi: 10.1080/15476286.2016.1255397. Epub 2016 Nov 18. Review.

17.

Droplet organelles?

Courchaine EM, Lu A, Neugebauer KM.

EMBO J. 2016 Aug 1;35(15):1603-12. doi: 10.15252/embj.201593517. Epub 2016 Jun 29. Review.

18.

Splicing of Nascent RNA Coincides with Intron Exit from RNA Polymerase II.

Oesterreich FC, Herzel L, Straube K, Hujer K, Howard J, Neugebauer KM.

Cell. 2016 Apr 7;165(2):372-381. doi: 10.1016/j.cell.2016.02.045. Epub 2016 Mar 24.

19.

SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export.

Müller-McNicoll M, Botti V, de Jesus Domingues AM, Brandl H, Schwich OD, Steiner MC, Curk T, Poser I, Zarnack K, Neugebauer KM.

Genes Dev. 2016 Mar 1;30(5):553-66. doi: 10.1101/gad.276477.115.

20.

Paraspeckles: paragons of functional aggregation.

Courchaine E, Neugebauer KM.

J Cell Biol. 2015 Aug 17;210(4):527-8. doi: 10.1083/jcb.201507052.

21.

Coilin: The first 25 years.

Machyna M, Neugebauer KM, Staněk D.

RNA Biol. 2015;12(6):590-6. doi: 10.1080/15476286.2015.1034923. Review.

22.

Quantification of co-transcriptional splicing from RNA-Seq data.

Herzel L, Neugebauer KM.

Methods. 2015 Sep 1;85:36-43. doi: 10.1016/j.ymeth.2015.04.024. Epub 2015 Apr 27.

PMID:
25929182
23.

RNA: master or servant?

Neugebauer KM.

RNA. 2015 Apr;21(4):701-2. doi: 10.1261/rna.051250.115. No abstract available.

24.

The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies.

Machyna M, Kehr S, Straube K, Kappei D, Buchholz F, Butter F, Ule J, Hertel J, Stadler PF, Neugebauer KM.

Mol Cell. 2014 Nov 6;56(3):389-99. doi: 10.1016/j.molcel.2014.10.004. Epub 2014 Nov 6.

25.

Introns and gene expression: cellular constraints, transcriptional regulation, and evolutionary consequences.

Heyn P, Kalinka AT, Tomancak P, Neugebauer KM.

Bioessays. 2015 Feb;37(2):148-54. doi: 10.1002/bies.201400138. Epub 2014 Nov 14.

26.

Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing.

Bieberstein NI, Straube K, Neugebauer KM.

Methods Mol Biol. 2014;1126:315-23. doi: 10.1007/978-1-62703-980-2_23.

PMID:
24549674
27.

The earliest transcribed zygotic genes are short, newly evolved, and different across species.

Heyn P, Kircher M, Dahl A, Kelso J, Tomancak P, Kalinka AT, Neugebauer KM.

Cell Rep. 2014 Jan 30;6(2):285-92. doi: 10.1016/j.celrep.2013.12.030. Epub 2014 Jan 16.

28.

Good cap/bad cap: how the cap-binding complex determines RNA fate.

Müller-McNicoll M, Neugebauer KM.

Nat Struct Mol Biol. 2014 Jan;21(1):9-12. doi: 10.1038/nsmb.2751. No abstract available.

PMID:
24389545
29.

The nuclear cap-binding complex interacts with the U4/U6·U5 tri-snRNP and promotes spliceosome assembly in mammalian cells.

Pabis M, Neufeld N, Steiner MC, Bojic T, Shav-Tal Y, Neugebauer KM.

RNA. 2013 Aug;19(8):1054-63. doi: 10.1261/rna.037069.112. Epub 2013 Jun 21.

30.

Counting on co-transcriptional splicing.

Brugiolo M, Herzel L, Neugebauer KM.

F1000Prime Rep. 2013 Apr 2;5:9. doi: 10.12703/P5-9. Print 2013.

31.

How cells get the message: dynamic assembly and function of mRNA-protein complexes.

Müller-McNicoll M, Neugebauer KM.

Nat Rev Genet. 2013 Apr;14(4):275-87. doi: 10.1038/nrg3434. Epub 2013 Mar 12. Review.

PMID:
23478349
32.

Cajal bodies: where form meets function.

Machyna M, Heyn P, Neugebauer KM.

Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):17-34. doi: 10.1002/wrna.1139. Epub 2012 Oct 5. Review.

PMID:
23042601
33.

First exon length controls active chromatin signatures and transcription.

Bieberstein NI, Carrillo Oesterreich F, Straube K, Neugebauer KM.

Cell Rep. 2012 Jul 26;2(1):62-8. doi: 10.1016/j.celrep.2012.05.019. Epub 2012 Jul 20.

34.

The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes.

Änkö ML, Müller-McNicoll M, Brandl H, Curk T, Gorup C, Henry I, Ule J, Neugebauer KM.

Genome Biol. 2012;13(3):R17. doi: 10.1186/gb-2012-13-3-r17.

35.

RNA-protein interactions in vivo: global gets specific.

Ankö ML, Neugebauer KM.

Trends Biochem Sci. 2012 Jul;37(7):255-62. doi: 10.1016/j.tibs.2012.02.005. Epub 2012 Mar 15. Review.

PMID:
22425269
36.

Structural basis for dimethylarginine recognition by the Tudor domains of human SMN and SPF30 proteins.

Tripsianes K, Madl T, Machyna M, Fessas D, Englbrecht C, Fischer U, Neugebauer KM, Sattler M.

Nat Struct Mol Biol. 2011 Nov 20;18(12):1414-20. doi: 10.1038/nsmb.2185.

PMID:
22101937
37.

Cotranscriptional spliceosome assembly and splicing are independent of the Prp40p WW domain.

Görnemann J, Barrandon C, Hujer K, Rutz B, Rigaut G, Kotovic KM, Faux C, Neugebauer KM, Séraphin B.

RNA. 2011 Dec;17(12):2119-29. doi: 10.1261/rna.02646811. Epub 2011 Oct 21.

38.

A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly.

Krastev DB, Slabicki M, Paszkowski-Rogacz M, Hubner NC, Junqueira M, Shevchenko A, Mann M, Neugebauer KM, Buchholz F.

Nat Cell Biol. 2011 Jun 5;13(7):809-18. doi: 10.1038/ncb2264.

PMID:
21642980
39.

Pause locally, splice globally.

Carrillo Oesterreich F, Bieberstein N, Neugebauer KM.

Trends Cell Biol. 2011 Jun;21(6):328-35. doi: 10.1016/j.tcb.2011.03.002. Epub 2011 Apr 27. Review.

PMID:
21530266
40.

Dynamic control of Cajal body number during zebrafish embryogenesis.

Strzelecka M, Oates AC, Neugebauer KM.

Nucleus. 2010 Jan-Feb;1(1):96-108. doi: 10.4161/nucl.1.1.10680.

41.

Binding properties and dynamic localization of an alternative isoform of the cap-binding complex subunit CBP20.

Pabis M, Neufeld N, Shav-Tal Y, Neugebauer KM.

Nucleus. 2010 Sep-Oct;1(5):412-21. doi: 10.4161/nucl.1.5.12839.

42.

Identification of four functional NR3B isoforms in developing white matter reveals unexpected diversity among glutamate receptors.

Domingues AM, Neugebauer KM, Fern R.

J Neurochem. 2011 May;117(3):449-60. doi: 10.1111/j.1471-4159.2011.07212.x. Epub 2011 Mar 14.

43.

The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing.

Brody Y, Neufeld N, Bieberstein N, Causse SZ, Böhnlein EM, Neugebauer KM, Darzacq X, Shav-Tal Y.

PLoS Biol. 2011 Jan 11;9(1):e1000573. doi: 10.1371/journal.pbio.1000573.

44.

Global analysis of nascent RNA reveals transcriptional pausing in terminal exons.

Carrillo Oesterreich F, Preibisch S, Neugebauer KM.

Mol Cell. 2010 Nov 24;40(4):571-81. doi: 10.1016/j.molcel.2010.11.004.

45.

The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells.

Huranová M, Ivani I, Benda A, Poser I, Brody Y, Hof M, Shav-Tal Y, Neugebauer KM, Stanek D.

J Cell Biol. 2010 Oct 4;191(1):75-86. doi: 10.1083/jcb.201004030.

46.

Long noncoding RNAs add another layer to pre-mRNA splicing regulation.

Ankö ML, Neugebauer KM.

Mol Cell. 2010 Sep 24;39(6):833-4. doi: 10.1016/j.molcel.2010.09.003.

47.

Global analysis reveals SRp20- and SRp75-specific mRNPs in cycling and neural cells.

Ankö ML, Morales L, Henry I, Beyer A, Neugebauer KM.

Nat Struct Mol Biol. 2010 Aug;17(8):962-70. doi: 10.1038/nsmb.1862. Epub 2010 Jul 18.

PMID:
20639886
48.

mRNA: a complex(ed) life.

Müller M, Neugebauer KM, Eckmann C.

Genome Biol. 2010;11(5):304. doi: 10.1186/gb-2010-11-5-304. Epub 2010 May 25.

49.

Coilin-dependent snRNP assembly is essential for zebrafish embryogenesis.

Strzelecka M, Trowitzsch S, Weber G, Lührmann R, Oates AC, Neugebauer KM.

Nat Struct Mol Biol. 2010 Apr;17(4):403-9. doi: 10.1038/nsmb.1783. Epub 2010 Mar 28.

PMID:
20357773
50.

SR protein family members display diverse activities in the formation of nascent and mature mRNPs in vivo.

Sapra AK, Ankö ML, Grishina I, Lorenz M, Pabis M, Poser I, Rollins J, Weiland EM, Neugebauer KM.

Mol Cell. 2009 Apr 24;34(2):179-90. doi: 10.1016/j.molcel.2009.02.031.

Supplemental Content

Loading ...
Support Center