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Items: 22

1.

The presence and impact of reference bias on population genomic studies of prehistoric human populations.

Günther T, Nettelblad C.

PLoS Genet. 2019 Jul 26;15(7):e1008302. doi: 10.1371/journal.pgen.1008302. eCollection 2019 Jul.

2.

Erratum: Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses. Corrigendum.

Daurer BJ, Okamoto K, Bielecki J, Maia FRNC, Mühlig K, Seibert MM, Hantke MF, Nettelblad C, Benner WH, Svenda M, Tîmneanu N, Ekeberg T, Loh ND, Pietrini A, Zani A, Rath AD, Westphal D, Kirian RA, Awel S, Wiedorn MO, van der Schot G, Carlsson GH, Hasse D, Sellberg JA, Barty A, Andreasson J, Boutet S, Williams G, Koglin J, Andersson I, Hajdu J, Larsson DSD.

IUCrJ. 2019 Apr 9;6(Pt 3):500. doi: 10.1107/S2052252519004317. eCollection 2019 May 1.

3.

Electrospray sample injection for single-particle imaging with x-ray lasers.

Bielecki J, Hantke MF, Daurer BJ, Reddy HKN, Hasse D, Larsson DSD, Gunn LH, Svenda M, Munke A, Sellberg JA, Flueckiger L, Pietrini A, Nettelblad C, Lundholm I, Carlsson G, Okamoto K, Timneanu N, Westphal D, Kulyk O, Higashiura A, van der Schot G, Loh ND, Wysong TE, Bostedt C, Gorkhover T, Iwan B, Seibert MM, Osipov T, Walter P, Hart P, Bucher M, Ulmer A, Ray D, Carini G, Ferguson KR, Andersson I, Andreasson J, Hajdu J, Maia FRNC.

Sci Adv. 2019 May 3;5(5):eaav8801. doi: 10.1126/sciadv.aav8801. eCollection 2019 May.

4.

Using convex optimization of autocorrelation with constrained support and windowing for improved phase retrieval accuracy.

Pietrini A, Nettelblad C.

Opt Express. 2018 Sep 17;26(19):24422-24443. doi: 10.1364/OE.26.024422.

PMID:
30469561
5.

Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging.

Lundholm IV, Sellberg JA, Ekeberg T, Hantke MF, Okamoto K, van der Schot G, Andreasson J, Barty A, Bielecki J, Bruza P, Bucher M, Carron S, Daurer BJ, Ferguson K, Hasse D, Krzywinski J, Larsson DSD, Morgan A, Mühlig K, Müller M, Nettelblad C, Pietrini A, Reddy HKN, Rupp D, Sauppe M, Seibert M, Svenda M, Swiggers M, Timneanu N, Ulmer A, Westphal D, Williams G, Zani A, Faigel G, Chapman HN, Möller T, Bostedt C, Hajdu J, Gorkhover T, Maia FRNC.

IUCrJ. 2018 Sep 1;5(Pt 5):531-541. doi: 10.1107/S2052252518010047. eCollection 2018 Sep 1.

6.

Assessing uncertainties in x-ray single-particle three-dimensional reconstruction.

Liu J, Engblom S, Nettelblad C.

Phys Rev E. 2018 Jul;98(1-1):013303. doi: 10.1103/PhysRevE.98.013303.

PMID:
30110794
7.

BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data.

Ausmees K, John A, Toor SZ, Hellander A, Nettelblad C.

BMC Bioinformatics. 2018 Jun 26;19(1):240. doi: 10.1186/s12859-018-2241-z.

8.

Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.

Kurta RP, Donatelli JJ, Yoon CH, Berntsen P, Bielecki J, Daurer BJ, DeMirci H, Fromme P, Hantke MF, Maia FRNC, Munke A, Nettelblad C, Pande K, Reddy HKN, Sellberg JA, Sierra RG, Svenda M, van der Schot G, Vartanyants IA, Williams GJ, Xavier PL, Aquila A, Zwart PH, Mancuso AP.

Phys Rev Lett. 2017 Oct 13;119(15):158102. doi: 10.1103/PhysRevLett.119.158102. Epub 2017 Oct 12.

9.

Artifact reduction in the CSPAD detectors used for LCLS experiments.

Pietrini A, Nettelblad C.

J Synchrotron Radiat. 2017 Sep 1;24(Pt 5):1092-1097. doi: 10.1107/S160057751701058X. Epub 2017 Aug 22.

PMID:
28862634
10.

Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source.

Reddy HKN, Yoon CH, Aquila A, Awel S, Ayyer K, Barty A, Berntsen P, Bielecki J, Bobkov S, Bucher M, Carini GA, Carron S, Chapman H, Daurer B, DeMirci H, Ekeberg T, Fromme P, Hajdu J, Hanke MF, Hart P, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Kurta RP, Larsson DSD, Duane Loh N, Maia FRNC, Mancuso AP, Mühlig K, Munke A, Nam D, Nettelblad C, Ourmazd A, Rose M, Schwander P, Seibert M, Sellberg JA, Song C, Spence JCH, Svenda M, Van der Schot G, Vartanyants IA, Williams GJ, Xavier PL.

Sci Data. 2017 Jun 27;4:170079. doi: 10.1038/sdata.2017.79.

11.

Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses.

Daurer BJ, Okamoto K, Bielecki J, Maia FRNC, Mühlig K, Seibert MM, Hantke MF, Nettelblad C, Benner WH, Svenda M, Tîmneanu N, Ekeberg T, Loh ND, Pietrini A, Zani A, Rath AD, Westphal D, Kirian RA, Awel S, Wiedorn MO, van der Schot G, Carlsson GH, Hasse D, Sellberg JA, Barty A, Andreasson J, Boutet S, Williams G, Koglin J, Andersson I, Hajdu J, Larsson DSD.

IUCrJ. 2017 Apr 7;4(Pt 3):251-262. doi: 10.1107/S2052252517003591. eCollection 2017 May 1. Erratum in: IUCrJ. 2019 Apr 09;6(Pt 3):500.

12.

A hybrid method for the imputation of genomic data in livestock populations.

Antolín R, Nettelblad C, Gorjanc G, Money D, Hickey JM.

Genet Sel Evol. 2017 Mar 3;49(1):30. doi: 10.1186/s12711-017-0300-y.

13.

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source.

Munke A, Andreasson J, Aquila A, Awel S, Ayyer K, Barty A, Bean RJ, Berntsen P, Bielecki J, Boutet S, Bucher M, Chapman HN, Daurer BJ, DeMirci H, Elser V, Fromme P, Hajdu J, Hantke MF, Higashiura A, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Reddy HK, Lan TY, Larsson DS, Liu H, Loh ND, Maia FR, Mancuso AP, Mühlig K, Nakagawa A, Nam D, Nelson G, Nettelblad C, Okamoto K, Ourmazd A, Rose M, van der Schot G, Schwander P, Seibert MM, Sellberg JA, Sierra RG, Song C, Svenda M, Timneanu N, Vartanyants IA, Westphal D, Wiedorn MO, Williams GJ, Xavier PL, Yoon CH, Zook J.

Sci Data. 2016 Aug 1;3:160064. doi: 10.1038/sdata.2016.64.

14.

Hummingbird: monitoring and analyzing flash X-ray imaging experiments in real time.

Daurer BJ, Hantke MF, Nettelblad C, Maia FR.

J Appl Crystallogr. 2016 Apr 18;49(Pt 3):1042-1047. eCollection 2016 Jun 1.

15.

A Flexible Computational Framework Using R and Map-Reduce for Permutation Tests of Massive Genetic Analysis of Complex Traits.

Mahjani B, Toor S, Nettelblad C, Holmgren S.

IEEE/ACM Trans Comput Biol Bioinform. 2017 Mar-Apr;14(2):381-392. doi: 10.1109/TCBB.2016.2527639. Epub 2016 Feb 11.

PMID:
26887003
16.

Three-dimensional reconstruction of the giant mimivirus particle with an x-ray free-electron laser.

Ekeberg T, Svenda M, Abergel C, Maia FR, Seltzer V, Claverie JM, Hantke M, Jönsson O, Nettelblad C, van der Schot G, Liang M, DePonte DP, Barty A, Seibert MM, Iwan B, Andersson I, Loh ND, Martin AV, Chapman H, Bostedt C, Bozek JD, Ferguson KR, Krzywinski J, Epp SW, Rolles D, Rudenko A, Hartmann R, Kimmel N, Hajdu J.

Phys Rev Lett. 2015 Mar 6;114(9):098102. Epub 2015 Mar 2.

PMID:
25793853
17.

MAPfastR: quantitative trait loci mapping in outbred line crosses.

Nelson RM, Nettelblad C, Pettersson ME, Shen X, Crooks L, Besnier F, Alvarez-Castro JM, Rönnegård L, Ek W, Sheng Z, Kierczak M, Holmgren S, Carlborg O.

G3 (Bethesda). 2013 Dec 9;3(12):2147-9. doi: 10.1534/g3.113.008623.

18.

Fast and accurate detection of multiple quantitative trait Loci.

Nettelblad C, Mahjani B, Holmgren S.

J Comput Biol. 2013 Sep;20(9):687-702. doi: 10.1089/cmb.2012.0242. Epub 2013 Aug 6.

19.

Breakdown of methods for phasing and imputation in the presence of double genotype sharing.

Nettelblad C.

PLoS One. 2013;8(3):e60354. doi: 10.1371/journal.pone.0060354. Epub 2013 Mar 28.

20.
21.

An Improved Method for Estimating Chromosomal Line Origin in QTL Analysis of Crosses Between Outbred Lines.

Crooks L, Nettelblad C, Carlborg O.

G3 (Bethesda). 2011 Jun;1(1):57-64. doi: 10.1534/g3.111.000109. Epub 2011 Jun 1.

22.

Haplotype inference based on Hidden Markov Models in the QTL-MAS 2010 multi-generational dataset.

Nettelblad C.

BMC Proc. 2011 May 27;5 Suppl 3:S10. doi: 10.1186/1753-6561-5-S3-S10.

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