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Items: 35


Recombination rate variation and infrequent sex influence genetic diversity in Chlamydomonas reinhardtii.

Hasan AR, Ness RW.

Genome Biol Evol. 2020 Mar 17. pii: evaa057. doi: 10.1093/gbe/evaa057. [Epub ahead of print]


Patterns of population structure and complex haplotype sharing among field isolates of the green alga Chlamydomonas reinhardtii.

Craig RJ, Böndel KB, Arakawa K, Nakada T, Ito T, Bell G, Colegrave N, Keightley PD, Ness RW.

Mol Ecol. 2019 Sep;28(17):3977-3993. doi: 10.1111/mec.15193. Epub 2019 Sep 11.


Inferring the distribution of fitness effects of spontaneous mutations in Chlamydomonas reinhardtii.

Böndel KB, Kraemer SA, Samuels T, McClean D, Lachapelle J, Ness RW, Colegrave N, Keightley PD.

PLoS Biol. 2019 Jun 26;17(6):e3000192. doi: 10.1371/journal.pbio.3000192. eCollection 2019 Jun.


Consequences of recombination for the evolution of the mating type locus in Chlamydomonas reinhardtii.

Hasan AR, Duggal JK, Ness RW.

New Phytol. 2019 Nov;224(3):1339-1348. doi: 10.1111/nph.16003. Epub 2019 Jul 20.


RNA-sequencing data highlighting the time-of-day-dependent transcriptome of the central circadian pacemaker in Sox2-deficient mice.

Cheng AH, Bouchard-Cannon P, Ness RW, Cheng HM.

Data Brief. 2019 Apr 8;24:103909. doi: 10.1016/j.dib.2019.103909. eCollection 2019 Jun.


SOX2-Dependent Transcription in Clock Neurons Promotes the Robustness of the Central Circadian Pacemaker.

Cheng AH, Bouchard-Cannon P, Hegazi S, Lowden C, Fung SW, Chiang CK, Ness RW, Cheng HM.

Cell Rep. 2019 Mar 19;26(12):3191-3202.e8. doi: 10.1016/j.celrep.2019.02.068.


A roadmap for urban evolutionary ecology.

Rivkin LR, Santangelo JS, Alberti M, Aronson MFJ, de Keyzer CW, Diamond SE, Fortin MJ, Frazee LJ, Gorton AJ, Hendry AP, Liu Y, Losos JB, MacIvor JS, Martin RA, McDonnell MJ, Miles LS, Munshi-South J, Ness RW, Newman AEM, Stothart MR, Theodorou P, Thompson KA, Verrelli BC, Whitehead A, Winchell KM, Johnson MTJ.

Evol Appl. 2018 Dec 14;12(3):384-398. doi: 10.1111/eva.12734. eCollection 2019 Mar.


Modern spandrels: the roles of genetic drift, gene flow and natural selection in the evolution of parallel clines.

Santangelo JS, Johnson MTJ, Ness RW.

Proc Biol Sci. 2018 May 16;285(1878). pii: 20180230. doi: 10.1098/rspb.2018.0230.


The rate and potential relevance of new mutations in a colonizing plant lineage.

Exposito-Alonso M, Becker C, Schuenemann VJ, Reiter E, Setzer C, Slovak R, Brachi B, Hagmann J, Grimm DG, Chen J, Busch W, Bergelson J, Ness RW, Krause J, Burbano HA, Weigel D.

PLoS Genet. 2018 Feb 12;14(2):e1007155. doi: 10.1371/journal.pgen.1007155. eCollection 2018 Feb.


Fitness change in relation to mutation number in spontaneous mutation accumulation lines of Chlamydomonas reinhardtii.

Kraemer SA, Böndel KB, Ness RW, Keightley PD, Colegrave N.

Evolution. 2017 Dec;71(12):2918-2929. doi: 10.1111/evo.13360. Epub 2017 Oct 26.


The Recombination Landscape in Wild House Mice Inferred Using Population Genomic Data.

Booker TR, Ness RW, Keightley PD.

Genetics. 2017 Sep;207(1):297-309. doi: 10.1534/genetics.117.300063. Epub 2017 Jul 27.


Fungus Causing White-Nose Syndrome in Bats Accumulates Genetic Variability in North America with No Sign of Recombination.

Trivedi J, Lachapelle J, Vanderwolf KJ, Misra V, Willis CKR, Ratcliffe JM, Ness RW, Anderson JB, Kohn LM.

mSphere. 2017 Jul 12;2(4). pii: e00271-17. doi: 10.1128/mSphereDirect.00271-17. eCollection 2017 Jul-Aug.


Are sex ratio distorting endosymbionts responsible for mating system variation among dance flies (Diptera: Empidinae)?

Murray RL, Herridge EJ, Ness RW, Bussière LF.

PLoS One. 2017 Jun 13;12(6):e0178364. doi: 10.1371/journal.pone.0178364. eCollection 2017.


Strategies for complete plastid genome sequencing.

Twyford AD, Ness RW.

Mol Ecol Resour. 2017 Sep;17(5):858-868. doi: 10.1111/1755-0998.12626. Epub 2016 Nov 28. Review.


Fitness effects of new mutations in Chlamydomonas reinhardtii across two stress gradients.

Kraemer SA, Morgan AD, Ness RW, Keightley PD, Colegrave N.

J Evol Biol. 2016 Mar;29(3):583-93. doi: 10.1111/jeb.12807. Epub 2016 Jan 5.


Direct Estimate of the Spontaneous Mutation Rate Uncovers the Effects of Drift and Recombination in the Chlamydomonas reinhardtii Plastid Genome.

Ness RW, Kraemer SA, Colegrave N, Keightley PD.

Mol Biol Evol. 2016 Mar;33(3):800-8. doi: 10.1093/molbev/msv272. Epub 2015 Nov 28.


Assessing Recent Selection and Functionality at Long Noncoding RNA Loci in the Mouse Genome.

Wiberg RA, Halligan DL, Ness RW, Necsulea A, Kaessmann H, Keightley PD.

Genome Biol Evol. 2015 Aug 12;7(8):2432-44. doi: 10.1093/gbe/evv155.


Extensive de novo mutation rate variation between individuals and across the genome of Chlamydomonas reinhardtii.

Ness RW, Morgan AD, Vasanthakrishnan RB, Colegrave N, Keightley PD.

Genome Res. 2015 Nov;25(11):1739-49. doi: 10.1101/gr.191494.115. Epub 2015 Aug 10.


Molecular evolution: breakthroughs and mysteries in Batesian mimicry.

Booker T, Ness RW, Charlesworth D.

Curr Biol. 2015 Jun 15;25(12):R506-8. doi: 10.1016/j.cub.2015.04.024.


Recent Evolution in Rattus norvegicus Is Shaped by Declining Effective Population Size.

Deinum EE, Halligan DL, Ness RW, Zhang YH, Cong L, Zhang JX, Keightley PD.

Mol Biol Evol. 2015 Oct;32(10):2547-58. doi: 10.1093/molbev/msv126. Epub 2015 Jun 1.


The evolution of selfing is accompanied by reduced efficacy of selection and purging of deleterious mutations.

Arunkumar R, Ness RW, Wright SI, Barrett SC.

Genetics. 2015 Mar;199(3):817-29. doi: 10.1534/genetics.114.172809. Epub 2014 Dec 30.


Estimation of the spontaneous mutation rate in Heliconius melpomene.

Keightley PD, Pinharanda A, Ness RW, Simpson F, Dasmahapatra KK, Mallet J, Davey JW, Jiggins CD.

Mol Biol Evol. 2015 Jan;32(1):239-43. doi: 10.1093/molbev/msu302. Epub 2014 Nov 3.


Spontaneous mutation accumulation in multiple strains of the green alga, Chlamydomonas reinhardtii.

Morgan AD, Ness RW, Keightley PD, Colegrave N.

Evolution. 2014 Sep;68(9):2589-602. doi: 10.1111/evo.12448. Epub 2014 Jul 9.


Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents.

Halligan DL, Kousathanas A, Ness RW, Harr B, Eöry L, Keane TM, Adams DJ, Keightley PD.

PLoS Genet. 2013;9(12):e1003995. doi: 10.1371/journal.pgen.1003995. Epub 2013 Dec 5.


Processing genome scale tabular data with wormtable.

Kelleher J, Ness RW, Halligan DL.

BMC Bioinformatics. 2013 Dec 5;14:356. doi: 10.1186/1471-2105-14-356.


Estimation of the spontaneous mutation rate per nucleotide site in a Drosophila melanogaster full-sib family.

Keightley PD, Ness RW, Halligan DL, Haddrill PR.

Genetics. 2014 Jan;196(1):313-20. doi: 10.1534/genetics.113.158758. Epub 2013 Nov 8.


Comparative population genomics in Collinsia sister species reveals evidence for reduced effective population size, relaxed selection, and evolution of biased gene conversion with an ongoing mating system shift.

Hazzouri KM, Escobar JS, Ness RW, Killian Newman L, Randle AM, Kalisz S, Wright SI.

Evolution. 2013 May;67(5):1263-78. doi: 10.1111/evo.12027. Epub 2013 Jan 11.


Nuclear gene variation in wild brown rats.

Ness RW, Zhang YH, Cong L, Wang Y, Zhang JX, Keightley PD.

G3 (Bethesda). 2012 Dec;2(12):1661-4. doi: 10.1534/g3.112.004713. Epub 2012 Dec 1.


Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii.

Ness RW, Morgan AD, Colegrave N, Keightley PD.

Genetics. 2012 Dec;192(4):1447-54. doi: 10.1534/genetics.112.145078. Epub 2012 Oct 10.


De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants.

Ness RW, Siol M, Barrett SC.

BMC Genomics. 2011 Jun 7;12:298. doi: 10.1186/1471-2164-12-298.


Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae.

Ness RW, Graham SW, Barrett SC.

Mol Biol Evol. 2011 Nov;28(11):3009-18. doi: 10.1093/molbev/msr119. Epub 2011 Jun 1.


Mating-system variation, demographic history and patterns of nucleotide diversity in the Tristylous plant Eichhornia paniculata.

Ness RW, Wright SI, Barrett SC.

Genetics. 2010 Feb;184(2):381-92. doi: 10.1534/genetics.109.110130. Epub 2009 Nov 16.


Evolutionary pathways to self-fertilization in a tristylous plant species.

Barrett SC, Ness RW, Vallejo-Marín M.

New Phytol. 2009 Aug;183(3):546-56. doi: 10.1111/j.1469-8137.2009.02937.x. Epub 2009 Jul 8. Review.


Impact of an orally administered insect growth regulator (lufenuron) on flea infestations of dogs in a controlled simulated home environment.

Smith RD, Paul AJ, Kitron UD, Philip JR, Barnett S, Piel MJ, Ness RW, Evilsizer M.

Am J Vet Res. 1996 Apr;57(4):502-4.


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