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Items: 48

1.

Minimal standards for the description of new genera and species of rhizobia and agrobacteria.

de Lajudie PM, Andrews M, Ardley J, Eardly B, Jumas-Bilak E, Kuzmanović N, Lassalle F, Lindström K, Mhamdi R, Martínez-Romero E, Moulin L, Mousavi SA, Nesme X, Peix A, Puławska J, Steenkamp E, Stępkowski T, Tian CF, Vinuesa P, Wei G, Willems A, Zilli J, Young P.

Int J Syst Evol Microbiol. 2019 May 29. doi: 10.1099/ijsem.0.003426. [Epub ahead of print]

PMID:
31140963
2.

Agrobacterium rosae sp. nov., isolated from galls on different agricultural crops.

Kuzmanović N, Puławska J, Smalla K, Nesme X.

Syst Appl Microbiol. 2018 May;41(3):191-197. doi: 10.1016/j.syapm.2018.01.004. Epub 2018 Feb 1.

PMID:
29426637
3.

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium.

Lassalle F, Planel R, Penel S, Chapulliot D, Barbe V, Dubost A, Calteau A, Vallenet D, Mornico D, Bigot T, Guéguen L, Vial L, Muller D, Daubin V, Nesme X.

Genome Biol Evol. 2017 Dec 1;9(12):3413-3431. doi: 10.1093/gbe/evx255.

4.

Tomato root microbiota and Phytophthora parasitica-associated disease.

Larousse M, Rancurel C, Syska C, Palero F, Etienne C, Industri B, Nesme X, Bardin M, Galiana E.

Microbiome. 2017 May 16;5(1):56. doi: 10.1186/s40168-017-0273-7.

5.

Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum.

Baude J, Vial L, Villard C, Campillo T, Lavire C, Nesme X, Hommais F.

Appl Environ Microbiol. 2016 May 31;82(12):3515-3524. doi: 10.1128/AEM.00419-16. Print 2016 Jun 15.

6.

Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis.

Lassalle F, Muller D, Nesme X.

Res Microbiol. 2015 Dec;166(10):729-41. doi: 10.1016/j.resmic.2015.06.008. Epub 2015 Jul 17. Review.

PMID:
26192210
7.

Small RNA Deep-Sequencing Analyses Reveal a New Regulator of Virulence in Agrobacterium fabrum C58.

Dequivre M, Diel B, Villard C, Sismeiro O, Durot M, Coppée JY, Nesme X, Vial L, Hommais F.

Mol Plant Microbe Interact. 2015 May;28(5):580-9. doi: 10.1094/MPMI-12-14-0380-FI.

8.

GC-Content evolution in bacterial genomes: the biased gene conversion hypothesis expands.

Lassalle F, Périan S, Bataillon T, Nesme X, Duret L, Daubin V.

PLoS Genet. 2015 Feb 6;11(2):e1004941. doi: 10.1371/journal.pgen.1004941. eCollection 2015 Feb.

9.

Revised phylogeny of Rhizobiaceae: proposal of the delineation of Pararhizobium gen. nov., and 13 new species combinations.

Mousavi SA, Willems A, Nesme X, de Lajudie P, Lindström K.

Syst Appl Microbiol. 2015 Mar;38(2):84-90. doi: 10.1016/j.syapm.2014.12.003. Epub 2014 Dec 27.

PMID:
25595870
10.

Analysis of hydroxycinnamic acid degradation in Agrobacterium fabrum reveals a coenzyme A-dependent, beta-oxidative deacetylation pathway.

Campillo T, Renoud S, Kerzaon I, Vial L, Baude J, Gaillard V, Bellvert F, Chamignon C, Comte G, Nesme X, Lavire C, Hommais F.

Appl Environ Microbiol. 2014 Jun;80(11):3341-9. doi: 10.1128/AEM.00475-14. Epub 2014 Mar 21.

11.

Phylogeny of the Rhizobium-Allorhizobium-Agrobacterium clade supports the delineation of Neorhizobium gen. nov.

Mousavi SA, Österman J, Wahlberg N, Nesme X, Lavire C, Vial L, Paulin L, de Lajudie P, Lindström K.

Syst Appl Microbiol. 2014 May;37(3):208-15. doi: 10.1016/j.syapm.2013.12.007. Epub 2014 Feb 24.

PMID:
24581678
12.

Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid.

Ramírez-Bahena MH, Vial L, Lassalle F, Diel B, Chapulliot D, Daubin V, Nesme X, Muller D.

Mol Phylogenet Evol. 2014 Apr;73:202-7. doi: 10.1016/j.ympev.2014.01.005. Epub 2014 Jan 17.

PMID:
24440816
13.

Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Andres J, Arsène-Ploetze F, Barbe V, Brochier-Armanet C, Cleiss-Arnold J, Coppée JY, Dillies MA, Geist L, Joublin A, Koechler S, Lassalle F, Marchal M, Médigue C, Muller D, Nesme X, Plewniak F, Proux C, Ramírez-Bahena MH, Schenowitz C, Sismeiro O, Vallenet D, Santini JM, Bertin PN.

Genome Biol Evol. 2013;5(5):934-53. doi: 10.1093/gbe/evt061.

14.

Rapid and accurate species and genomic species identification and exhaustive population diversity assessment of Agrobacterium spp. using recA-based PCR.

Shams M, Vial L, Chapulliot D, Nesme X, Lavire C.

Syst Appl Microbiol. 2013 Jul;36(5):351-8. doi: 10.1016/j.syapm.2013.03.002. Epub 2013 Apr 8.

PMID:
23578959
15.

Rapid and simultaneous detection of linear chromosome and large plasmids in Proteobacteria.

Ramírez-Bahena MH, Nesme X, Muller D.

J Basic Microbiol. 2012 Dec;52(6):736-9. doi: 10.1002/jobm.201100278. Epub 2012 Feb 23.

PMID:
22359239
16.

Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens.

Lassalle F, Campillo T, Vial L, Baude J, Costechareyre D, Chapulliot D, Shams M, Abrouk D, Lavire C, Oger-Desfeux C, Hommais F, Guéguen L, Daubin V, Muller D, Nesme X.

Genome Biol Evol. 2011;3:762-81. doi: 10.1093/gbe/evr070. Epub 2011 Jul 27.

17.

Genomospecies identification and phylogenomic relevance of AFLP analysis of isolated and non-isolated strains of Frankia spp.

Bautista GH, Cruz HA, Nesme X, Valdés M, Mendoza HA, Fernandez MP.

Syst Appl Microbiol. 2011 May;34(3):200-6. doi: 10.1016/j.syapm.2010.10.004. Epub 2011 Feb 9.

PMID:
21310572
18.

Ralstonia solanacearum virulence increased following large interstrain gene transfers by natural transformation.

Coupat-Goutaland B, Bernillon D, Guidot A, Prior P, Nesme X, Bertolla F.

Mol Plant Microbe Interact. 2011 Apr;24(4):497-505. doi: 10.1094/MPMI-09-10-0197.

19.

Rapid and efficient identification of Agrobacterium species by recA allele analysis: Agrobacterium recA diversity.

Costechareyre D, Rhouma A, Lavire C, Portier P, Chapulliot D, Bertolla F, Boubaker A, Dessaux Y, Nesme X.

Microb Ecol. 2010 Nov;60(4):862-72. doi: 10.1007/s00248-010-9685-7. Epub 2010 Jun 3.

PMID:
20521039
20.

Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas.

Ah-You N, Gagnevin L, Grimont PA, Brisse S, Nesme X, Chiroleu F, Bui Thi Ngoc L, Jouen E, Lefeuvre P, Vernière C, Pruvost O.

Int J Syst Evol Microbiol. 2009 Feb;59(Pt 2):306-18. doi: 10.1099/ijs.0.65453-0.

PMID:
19196770
21.

Optimization and biochemical characterization of a bacteriocin from a newly isolated Bacillus subtilis strain 14B for biocontrol of Agrobacterium spp. strains.

Hammami I, Rhouma A, Jaouadi B, Rebai A, Nesme X.

Lett Appl Microbiol. 2009 Feb;48(2):253-60. doi: 10.1111/j.1472-765X.2008.02524.x.

22.

Homologous recombination in Agrobacterium: potential implications for the genomic species concept in bacteria.

Costechareyre D, Bertolla F, Nesme X.

Mol Biol Evol. 2009 Jan;26(1):167-76. doi: 10.1093/molbev/msn236. Epub 2008 Oct 20.

PMID:
18936442
23.

Natural transformation in the Ralstonia solanacearum species complex: number and size of DNA that can be transferred.

Coupat B, Chaumeille-Dole F, Fall S, Prior P, Simonet P, Nesme X, Bertolla F.

FEMS Microbiol Ecol. 2008 Oct;66(1):14-24. doi: 10.1111/j.1574-6941.2008.00552.x. Epub 2008 Jul 25.

24.

Identification of genomic species in Agrobacterium biovar 1 by AFLP genomic markers.

Portier P, Fischer-Le Saux M, Mougel C, Lerondelle C, Chapulliot D, Thioulouse J, Nesme X.

Appl Environ Microbiol. 2006 Nov;72(11):7123-31. Epub 2006 Aug 25.

25.

Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities.

Sanguin H, Remenant B, Dechesne A, Thioulouse J, Vogel TM, Nesme X, Moënne-Loccoz Y, Grundmann GL.

Appl Environ Microbiol. 2006 Jun;72(6):4302-12.

26.

Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria.

Sanguin H, Herrera A, Oger-Desfeux C, Dechesne A, Simonet P, Navarro E, Vogel TM, Moënne-Loccoz Y, Nesme X, Grundmann GL.

Environ Microbiol. 2006 Feb;8(2):289-307.

PMID:
16423016
29.

A highly selectable and highly transferable Ti plasmid to study conjugal host range and Ti plasmid dissemination in complex ecosystems.

Teyssier-Cuvelle S, Oger P, Mougel C, Groud K, Farrand SK, Nesme X.

Microb Ecol. 2004 Jul;48(1):10-8. Epub 2004 May 28.

PMID:
15164241
30.

Relationship between spatial and genetic distance in Agrobacterium spp. in 1 cubic centimeter of soil.

Vogel J, Normand P, Thioulouse J, Nesme X, Grundmann GL.

Appl Environ Microbiol. 2003 Mar;69(3):1482-7.

31.

Seasonal fluctuations and long-term persistence of pathogenic populations of Agrobacterium spp. in soils.

Krimi Z, Petit A, Mougel C, Dessaux Y, Nesme X.

Appl Environ Microbiol. 2002 Jul;68(7):3358-65.

32.

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.

Stackebrandt E, Frederiksen W, Garrity GM, Grimont PA, Kämpfer P, Maiden MC, Nesme X, Rosselló-Mora R, Swings J, Trüper HG, Vauterin L, Ward AC, Whitman WB.

Int J Syst Evol Microbiol. 2002 May;52(Pt 3):1043-7.

PMID:
12054223
33.

A mathematical method for determining genome divergence and species delineation using AFLP.

Mougel C, Thioulouse J, Perrière G, Nesme X.

Int J Syst Evol Microbiol. 2002 Mar;52(Pt 2):573-86.

PMID:
11931171
34.

Relationships between Staphylococcus aureus genetic background, virulence factors, agr groups (alleles), and human disease.

Jarraud S, Mougel C, Thioulouse J, Lina G, Meugnier H, Forey F, Nesme X, Etienne J, Vandenesch F.

Infect Immun. 2002 Feb;70(2):631-41.

35.

Molecular tools for the characterisation of antibiotic-resistant bacteria.

Aarts HJ, Boumedine KS, Nesme X, Cloeckaert A.

Vet Res. 2001 May-Aug;32(3-4):363-80. Review.

36.

Comparison between electrochemical and optoelectrochemical impedance measurements for detection of DNA hybridization.

Souteyrand E, Chen C, Cloarec JP, Nesme X, Simonet P, Navarro I, Martin JR.

Appl Biochem Biotechnol. 2000 Nov-Dec;89(2-3):195-207.

PMID:
11209463
37.

Novel tellurite-amended media and specific chromosomal and Ti plasmid probes for direct analysis of soil populations of Agrobacterium biovars 1 and 2.

Mougel C, Cournoyer B, Nesme X.

Appl Environ Microbiol. 2001 Jan;67(1):65-74. Erratum in: Appl Environ Microbiol 2001 Mar;67(3):1404.

38.

Plant genome complexity may be a factor limiting in situ the transfer of transgenic plant genes to the phytopathogen Ralstonia solanacearum.

Bertolla F, Pepin R, Passelegue-Robe E, Paget E, Simkin A, Nesme X, Simonet P.

Appl Environ Microbiol. 2000 Sep;66(9):4161-7.

39.

Quantification of bias related to the extraction of DNA directly from soils.

Frostegård A, Courtois S, Ramisse V, Clerc S, Bernillon D, Le Gall F, Jeannin P, Nesme X, Simonet P.

Appl Environ Microbiol. 1999 Dec;65(12):5409-20.

40.

Ti plasmids from Agrobacterium characterize rootstock clones that initiated a spread of crown gall disease in Mediterranean countries.

Pionnat S, Keller H, Héricher D, Bettachini A, Dessaux Y, Nesme X, Poncet C.

Appl Environ Microbiol. 1999 Sep;65(9):4197-206.

41.

Direct conjugal transfers of Ti plasmid to soil microflora.

Teyssier-Cuvelle S, Mougel C, Nesme X.

Mol Ecol. 1999 Aug;8(8):1273-84.

PMID:
10447868
42.

Conditions for natural transformation of Ralstonia solanacearum.

Bertolla F, Van Gijsegem F, Nesme X, Simonet P.

Appl Environ Microbiol. 1997 Dec;63(12):4965-8.

43.

IS292: a novel insertion element from Agrobacterium.

Ponsonnet C, Normand P, Pilate G, Nesme X.

Microbiology. 1995 Apr;141 ( Pt 4):853-61.

PMID:
7773388
44.

Novel Ti plasmids in Agrobacterium strains isolated from fig tree and chrysanthemum tumors and their opinelike molecules.

Vaudequin-Dransart V, Petit A, Poncet C, Ponsonnet C, Nesme X, Jones JB, Bouzar H, Chilton WS, Dessaux Y.

Mol Plant Microbe Interact. 1995 Mar-Apr;8(2):311-21.

PMID:
7756696
45.

A new Agrobacterium strain isolated from aerial tumors on Ficus benjamina L.

Bouzar H, Chilton WS, Nesme X, Dessaux Y, Vaudequin V, Petit A, Jones JB, Hodge NC.

Appl Environ Microbiol. 1995 Jan;61(1):65-73.

46.
47.

Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction.

Picard C, Ponsonnet C, Paget E, Nesme X, Simonet P.

Appl Environ Microbiol. 1992 Sep;58(9):2717-22.

48.

Population Heterogeneity of Agrobacterium tumefaciens in Galls of Populus L. from a Single Nursery.

Nesme X, Michel MF, Digat B.

Appl Environ Microbiol. 1987 Apr;53(4):655-9.

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