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Items: 44


Insights into origins and function of the unexplored majority of the reductive dehalogenase gene family as a result of genome assembly and ortholog group classification.

Molenda O, Puentes Jácome LA, Cao X, Nesbø CL, Tang S, Morson N, Patron J, Lomheim L, Wishart DS, Edwards EA.

Environ Sci Process Impacts. 2020 Mar 11. doi: 10.1039/c9em00605b. [Epub ahead of print]


Antibiotic resistome and microbial community structure during anaerobic co-digestion of food waste, paper and cardboard.

Kanger K, Guilford NGH, Lee H, Nesbø CL, Truu J, Edwards EA.

FEMS Microbiol Ecol. 2020 Feb 1;96(2). pii: fiaa006. doi: 10.1093/femsec/fiaa006.


Genomic analysis of the mesophilic Thermotogae genus Mesotoga reveals phylogeographic structure and genomic determinants of its distinct metabolism.

Nesbø CL, Charchuk R, Pollo SMJ, Budwill K, Kublanov IV, Haverkamp THA, Foght J.

Environ Microbiol. 2019 Jan;21(1):456-470. doi: 10.1111/1462-2920.14477. Epub 2018 Dec 19.


Thermosipho spp. Immune System Differences Affect Variation in Genome Size and Geographical Distributions.

Haverkamp THA, Geslin C, Lossouarn J, Podosokorskaya OA, Kublanov I, Nesbø CL.

Genome Biol Evol. 2018 Nov 1;10(11):2853-2866. doi: 10.1093/gbe/evy202.


Two viruses, MCV1 and MCV2, which infect Marinitoga bacteria isolated from deep-sea hydrothermal vents: functional and genomic analysis.

Mercier C, Lossouarn J, Nesbø CL, Haverkamp THA, Baudoux AC, Jebbar M, Bienvenu N, Thiroux S, Dupont S, Geslin C.

Environ Microbiol. 2018 Feb;20(2):577-587. doi: 10.1111/1462-2920.13967. Epub 2017 Dec 4.


Temporal dynamics in microbial soil communities at anthrax carcass sites.

Valseth K, Nesbø CL, Easterday WR, Turner WC, Olsen JS, Stenseth NC, Haverkamp THA.

BMC Microbiol. 2017 Sep 26;17(1):206. doi: 10.1186/s12866-017-1111-6.


Genomic insights into temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20 to 79 °C.

Pollo SMJ, Adebusuyi AA, Straub TJ, Foght JM, Zhaxybayeva O, Nesbø CL.

Extremophiles. 2017 Nov;21(6):963-979. doi: 10.1007/s00792-017-0956-9. Epub 2017 Sep 11.


Draft Genome Sequences of Two Bacillus anthracis Strains from Etosha National Park, Namibia.

Valseth K, Nesbø CL, Easterday WR, Turner WC, Olsen JS, Stenseth NC, Haverkamp TH.

Genome Announc. 2016 Aug 25;4(4). pii: e00861-16. doi: 10.1128/genomeA.00861-16.


Draft Genome Sequences of Kosmotoga sp. Strain DU53 and Kosmotoga arenicorallina S304.

Pollo SM, Charchuk R, Nesbø CL.

Genome Announc. 2016 Jun 16;4(3). pii: e00570-16. doi: 10.1128/genomeA.00570-16.


Insights into thermoadaptation and the evolution of mesophily from the bacterial phylum Thermotogae.

Pollo SM, Zhaxybayeva O, Nesbø CL.

Can J Microbiol. 2015 Sep;61(9):655-70. doi: 10.1139/cjm-2015-0073. Epub 2015 Jun 25.


'Ménage à trois': a selfish genetic element uses a virus to propagate within Thermotogales.

Lossouarn J, Nesbø CL, Mercier C, Zhaxybayeva O, Johnson MS, Charchuck R, Farasin J, Bienvenu N, Baudoux AC, Michoud G, Jebbar M, Geslin C.

Environ Microbiol. 2015 Sep;17(9):3278-88. doi: 10.1111/1462-2920.12783. Epub 2015 Mar 2.


Evidence for extensive gene flow and Thermotoga subpopulations in subsurface and marine environments.

Nesbø CL, S Swithers K, Dahle H, Haverkamp TH, Birkeland NK, Sokolova T, Kublanov I, Zhaxybayeva O.

ISME J. 2015 Jul;9(7):1532-42. doi: 10.1038/ismej.2014.238. Epub 2014 Dec 12.


Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common.

An D, Caffrey SM, Soh J, Agrawal A, Brown D, Budwill K, Dong X, Dunfield PF, Foght J, Gieg LM, Hallam SJ, Hanson NW, He Z, Jack TR, Klassen J, Konwar KM, Kuatsjah E, Li C, Larter S, Leopatra V, Nesbø CL, Oldenburg T, Pagé AP, Ramos-Padron E, Rochman FF, Saidi-Mehrabad A, Sensen CW, Sipahimalani P, Song YC, Wilson S, Wolbring G, Wong ML, Voordouw G.

Environ Sci Technol. 2013 Sep 17;47(18):10708-17. doi: 10.1021/es4020184. Epub 2013 Aug 26.


Vitamin B(12) synthesis and salvage pathways were acquired by horizontal gene transfer to the Thermotogales.

Swithers KS, Petrus AK, Secinaro MA, Nesbø CL, Gogarten JP, Noll KM, Butzin NC.

Genome Biol Evol. 2012;4(8):730-9. doi: 10.1093/gbe/evs057. Epub 2012 Jul 12.


Genome sequence of the mesophilic Thermotogales bacterium Mesotoga prima MesG1.Ag.4.2 reveals the largest Thermotogales genome to date.

Zhaxybayeva O, Swithers KS, Foght J, Green AG, Bruce D, Detter C, Han S, Teshima H, Han J, Woyke T, Pitluck S, Nolan M, Ivanova N, Pati A, Land ML, Dlutek M, Doolittle WF, Noll KM, Nesbø CL.

Genome Biol Evol. 2012;4(8):700-8. doi: 10.1093/gbe/evs059. Epub 2012 Jul 12.


METAGENassist: a comprehensive web server for comparative metagenomics.

Arndt D, Xia J, Liu Y, Zhou Y, Guo AC, Cruz JA, Sinelnikov I, Budwill K, Nesbø CL, Wishart DS.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W88-95. doi: 10.1093/nar/gks497. Epub 2012 May 29.


Mesotoga prima gen. nov., sp. nov., the first described mesophilic species of the Thermotogales.

Nesbø CL, Bradnan DM, Adebusuyi A, Dlutek M, Petrus AK, Foght J, Doolittle WF, Noll KM.

Extremophiles. 2012 May;16(3):387-93. doi: 10.1007/s00792-012-0437-0. Epub 2012 Mar 13.


Genome sequence of Kosmotoga olearia strain TBF 19.5.1, a thermophilic bacterium with a wide growth temperature range, isolated from the Troll B oil platform in the North Sea.

Swithers KS, DiPippo JL, Bruce DC, Detter C, Tapia R, Han S, Goodwin LA, Han J, Woyke T, Pitluck S, Pennacchio L, Nolan M, Mikhailova N, Land ML, Nesbø CL, Gogarten JP, Noll KM.

J Bacteriol. 2011 Oct;193(19):5566-7. doi: 10.1128/JB.05828-11.


Searching for mesophilic Thermotogales bacteria: "mesotogas" in the wild.

Nesbø CL, Kumaraswamy R, Dlutek M, Doolittle WF, Foght J.

Appl Environ Microbiol. 2010 Jul;76(14):4896-900. doi: 10.1128/AEM.02846-09. Epub 2010 May 21.


Kosmotoga olearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid.

Dipippo JL, Nesbø CL, Dahle H, Doolittle WF, Birkland NK, Noll KM.

Int J Syst Evol Microbiol. 2009 Dec;59(Pt 12):2991-3000. doi: 10.1099/ijs.0.008045-0. Epub 2009 Jul 30.


On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales.

Zhaxybayeva O, Swithers KS, Lapierre P, Fournier GP, Bickhart DM, DeBoy RT, Nelson KE, Nesbø CL, Doolittle WF, Gogarten JP, Noll KM.

Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5865-70. doi: 10.1073/pnas.0901260106. Epub 2009 Mar 23.


The genome of Thermosipho africanus TCF52B: lateral genetic connections to the Firmicutes and Archaea.

Nesbø CL, Bapteste E, Curtis B, Dahle H, Lopez P, Macleod D, Dlutek M, Bowman S, Zhaxybayeva O, Birkeland NK, Doolittle WF.

J Bacteriol. 2009 Mar;191(6):1974-8. doi: 10.1128/JB.01448-08. Epub 2009 Jan 5.


Systematic overestimation of gene gain through false diagnosis of gene absence.

Zhaxybayeva O, Nesbø CL, Doolittle WF.

Genome Biol. 2007;8(2):402.


Class 1 integrons potentially predating the association with tn402-like transposition genes are present in a sediment microbial community.

Stokes HW, Nesbø CL, Holley M, Bahl MI, Gillings MR, Boucher Y.

J Bacteriol. 2006 Aug;188(16):5722-30.


Evidence for existence of "mesotogas," members of the order Thermotogales adapted to low-temperature environments.

Nesbø CL, Dlutek M, Zhaxybayeva O, Doolittle WF.

Appl Environ Microbiol. 2006 Jul;72(7):5061-8.


Recovery and evolutionary analysis of complete integron gene cassette arrays from Vibrio.

Boucher Y, Nesbø CL, Joss MJ, Robinson A, Mabbutt BC, Gillings MR, Doolittle WF, Stokes HW.

BMC Evol Biol. 2006 Jan 18;6:3.


The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.

Mongodin EF, Nelson KE, Daugherty S, Deboy RT, Wister J, Khouri H, Weidman J, Walsh DA, Papke RT, Sanchez Perez G, Sharma AK, Nesbø CL, MacLeod D, Bapteste E, Doolittle WF, Charlebois RL, Legault B, Rodriguez-Valera F.

Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):18147-52. Epub 2005 Dec 5.


Recombination in Thermotoga: implications for species concepts and biogeography.

Nesbø CL, Dlutek M, Doolittle WF.

Genetics. 2006 Feb;172(2):759-69. Epub 2005 Dec 1.


Lateral gene transfer and phylogenetic assignment of environmental fosmid clones.

Nesbø CL, Boucher Y, Dlutek M, Doolittle WF.

Environ Microbiol. 2005 Dec;7(12):2011-26.


Targeting clusters of transferred genes in Thermotoga maritima.

Nesbø CL, Doolittle WF.

Environ Microbiol. 2003 Nov;5(11):1144-54.


Lateral gene transfer and the origins of prokaryotic groups.

Boucher Y, Douady CJ, Papke RT, Walsh DA, Boudreau ME, Nesbø CL, Case RJ, Doolittle WF.

Annu Rev Genet. 2003;37:283-328. Review.


Active self-splicing group I introns in 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles.

Nesbø CL, Doolittle WF.

Proc Natl Acad Sci U S A. 2003 Sep 16;100(19):10806-11. Epub 2003 Aug 28. Erratum in: Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14511.


How big is the iceberg of which organellar genes in nuclear genomes are but the tip?

Doolittle WF, Boucher Y, Nesbø CL, Douady CJ, Andersson JO, Roger AJ.

Philos Trans R Soc Lond B Biol Sci. 2003 Jan 29;358(1429):39-57; discussion 57-8. Review.


Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima.

Nesbø CL, Nelson KE, Doolittle WF.

J Bacteriol. 2002 Aug;184(16):4475-88.


Defining the core of nontransferable prokaryotic genes: the euryarchaeal core.

Nesbø CL, Boucher Y, Doolittle WF.

J Mol Evol. 2001 Oct-Nov;53(4-5):340-50.


Microbial genomes: dealing with diversity.

Boucher Y, Nesbø CL, Doolittle WF.

Curr Opin Microbiol. 2001 Jun;4(3):285-9. Review.


Genomics. Are there bugs in our genome?

Andersson JO, Doolittle WF, Nesbø CL.

Science. 2001 Jun 8;292(5523):1848-50. Epub 2001 May 17. No abstract available.


Phylogenetic analyses of two "archaeal" genes in thermotoga maritima reveal multiple transfers between archaea and bacteria.

Nesbo CL, L'Haridon S, Stetter KO, Doolittle WF.

Mol Biol Evol. 2001 Mar;18(3):362-75.


The melanocyte-stimulating hormone receptor (MC1-R) gene as a tool in evolutionary studies of artiodactyles.

Klungland H, Røed KH, Nesbø CL, Jakobsen KS, Våge DI.

Hereditas. 1999;131(1):39-46.


Genetic divergence and phylogeographic relationships among european perch (Perca fluviatilis) populations reflect glacial refugia and postglacial colonization.

Nesbø CL, Fossheim T, Vollestad LA, Jakobsen KS.

Mol Ecol. 1999 Sep;8(9):1387-404. Erratum in: Mol Ecol 2000 May;9(5):645-6.


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