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Comparison of SSOP versus NGS for HLA-A, B, C, DRB1, DRB3/B4/B5, DQA1, DQB1, DPA1, and DPB1 typing: toward single pass high resolution HLA typing in support of solid organ and hematopoietic cell transplant programs.

Smith AG, Pereira S, Jaramillo A, Stoll ST, Khan FM, Berka N, Mostafa AA, Pando MJ, Usenko CY, Bettinotti MP, Pyo CW, Nelson WC, Willis A, Askar M, Geraghty DE.

HLA. 2019 Jun 24. doi: 10.1111/tan.13619. [Epub ahead of print]


Association Between Liver Fibrosis and Serum Prostate Specific Antigen (PSA) Among US Men: National Health and Nutrition Examination Survey (NHANES) 2001-2010.

Wang A, Lazo M, Carter HB, Groopman JD, Nelson WG, Platz EA.

Cancer Epidemiol Biomarkers Prev. 2019 Jun 3. pii: cebp.0145.2019. doi: 10.1158/1055-9965.EPI-19-0145. [Epub ahead of print]


Review of the Effects of Perinatal Exposure to Endocrine-Disrupting Chemicals in Animals and Humans.

Nelson W, Wang YX, Sakwari G, Ding YB.

Rev Environ Contam Toxicol. 2019 May 26. doi: 10.1007/398_2019_30. [Epub ahead of print]


Eleven Amino Acids of HLA-DRB1 and Fifteen Amino Acids of HLA-DRB3, 4 and 5 Include Potentially "Causal Residues" Responsible for the Risk of Childhood Type 1 Diabetes.

Zhao LP, Papadopoulos GK, Kwok B, Xu B, Kong M, Moustakas AK, Bondinas GP, Carlsson A, Elding-Larsson H, Ludvigsson J, Marcus C, Persson M, Samuelsson U, Wang R, Pyo CW, Nelson WC, Geraghty DE, Lernmark Å.

Diabetes. 2019 May 24. pii: db190273. doi: 10.2337/db19-0273. [Epub ahead of print]


To Embed or Not: Network Embedding as a Paradigm in Computational Biology.

Nelson W, Zitnik M, Wang B, Leskovec J, Goldenberg A, Sharan R.

Front Genet. 2019 May 1;10:381. doi: 10.3389/fgene.2019.00381. eCollection 2019. Review.


A high-throughput screen of pharmacologically active compounds for inhibitors of UHRF1 reveals epigenetic activity of anthracycline derivative chemotherapeutic drugs.

Giovinazzo H, Walker D, Wyhs N, Liu J, Esopi DM, Vaghasia AM, Jain Y, Bhamidipati A, Zhou J, Nelson WG, Yegnasubramanian S.

Oncotarget. 2019 Apr 30;10(32):3040-3050. doi: 10.18632/oncotarget.26889. eCollection 2019 Apr 30.


Effects of exercise preconditioning and HSP72 on diaphragm muscle function during mechanical ventilation.

Smuder AJ, Morton AB, Hall SE, Wiggs MP, Ahn B, Wawrzyniak NR, Sollanek KJ, Min K, Kwon OS, Nelson WB, Powers SK.

J Cachexia Sarcopenia Muscle. 2019 Apr 10. doi: 10.1002/jcsm.12427. [Epub ahead of print]


Correction for Christensen et al., "Identification of Novel Protein Lysine Acetyltransferases in Escherichia coli".

Christensen DG, Meyer JG, Baumgartner JT, D'Souza AK, Nelson WC, Payne SH, Kuhn ML, Schilling B, Wolfe AJ.

MBio. 2019 Apr 9;10(2). pii: e00592-19. doi: 10.1128/mBio.00592-19. No abstract available.


Magmatic Response to Subduction Initiation: Part 1. Fore-arc Basalts of the Izu-Bonin Arc From IODP Expedition 352.

Shervais JW, Reagan M, Haugen E, Almeev RR, Pearce JA, Prytulak J, Ryan JG, Whattam SA, Godard M, Chapman T, Li H, Kurz W, Nelson WR, Heaton D, Kirchenbaur M, Shimizu K, Sakuyama T, Li Y, Vetter SK.

Geochem Geophys Geosyst. 2019 Jan;20(1):314-338. doi: 10.1029/2018GC007731. Epub 2019 Jan 16.


Toward a Conceptual Model of Affective Predictions in Palliative Care.

Ellis EM, Barnato AE, Chapman GB, Dionne-Odom JN, Lerner JS, Peters E, Nelson WL, Padgett L, Suls J, Ferrer RA.

J Pain Symptom Manage. 2019 Jun;57(6):1151-1165. doi: 10.1016/j.jpainsymman.2019.02.008. Epub 2019 Feb 19. Review.


Economic Burden of Non-Infectious Inflammatory Eye Disease (NIIED) in a Commercially-Insured Population in the United States.

Albini TA, Rice JB, White AG, Johnson M, Reiff J, Lima AF, Bartels-Peculis L, Ciepielewska G, Nelson WW.

Ocul Immunol Inflamm. 2019 Feb 22:1-11. doi: 10.1080/09273948.2018.1560476. [Epub ahead of print]


Microtextured CoCrMo alloy for use in metal-on-polyethylene prosthetic joint bearings: multi-directional wear and corrosion measurements.

Langhorn J, Borjali A, Hippensteel E, Nelson W, Raeymaekers B.

Tribol Int. 2018 Aug;124:178-183. doi: 10.1016/j.triboint.2018.04.007. Epub 2018 Apr 9.


If this is true, what does it imply? How end-user antibody validation facilitates insights into biology and disease.

Sfanos KS, Yegnasubramanian S, Nelson WG, Lotan TL, Kulac I, Hicks JL, Zheng Q, Bieberich CJ, Haffner MC, De Marzo AM.

Asian J Urol. 2019 Jan;6(1):10-25. doi: 10.1016/j.ajur.2018.11.006. Epub 2018 Dec 12. Review.


Duration of anticoagulant therapy and VTE recurrence in patients with cancer.

Khorana AA, McCrae KR, Milentijevic D, Fortier J, Nelson WW, Laliberté F, Crivera C, Lefebvre P, Schein J.

Support Care Cancer. 2019 Feb 8. doi: 10.1007/s00520-019-4661-3. [Epub ahead of print]


Retrospective Medical Record Review to Describe Use of Repository Corticotropin Injection Among Patients with Uveitis in the United States.

Nelson WW, Lima AF, Kranyak J, Opong-Owusu B, Ciepielewska G, Gallagher JR, Heap K, Carroll S.

J Ocul Pharmacol Ther. 2019 Apr;35(3):182-188. doi: 10.1089/jop.2018.0090. Epub 2019 Jan 24.


A novel cage for actinides: A 6W4Al43 (A  =  U and Pu).

Huang K, Nelson WL, Chemey AT, Albrecht-Schmitt TE, Baumbach RE.

J Phys Condens Matter. 2019 Apr 24;31(16):165601. doi: 10.1088/1361-648X/aafe9e. Epub 2019 Jan 15.


Overcoming the challenges of pen-side molecular diagnosis of African swine fever to support outbreak investigations under field conditions.

Liu L, Atim S, LeBlanc N, Rauh R, Esau M, Chenais E, Mwebe R, Nelson WM, Masembe C, Nantima N, Ayebazibwe C, Ståhl K.

Transbound Emerg Dis. 2019 Mar;66(2):908-914. doi: 10.1111/tbed.13103. Epub 2018 Dec 31.


Selenium and Sex Steroid Hormones in a U.S. Nationally Representative Sample of Men: A Role for the Link between Selenium and Estradiol in Prostate Carcinogenesis?

Van Hemelrijck M, Sollie S, Nelson WG, Yager JD, Kanarek NF, Dobs A, Platz EA, Rohrmann S.

Cancer Epidemiol Biomarkers Prev. 2019 Mar;28(3):578-583. doi: 10.1158/1055-9965.EPI-18-0520. Epub 2018 Nov 27.


Shear-induced damped oscillations in an epithelium depend on actomyosin contraction and E-cadherin cell adhesion.

Sadeghipour E, Garcia MA, Nelson WJ, Pruitt BL.

Elife. 2018 Nov 14;7. pii: e39640. doi: 10.7554/eLife.39640.


Asymmetric interactions and their consequences for vital rates and dynamics: the smaller tea tortrix as a model system.

Nelson WA, Joncour B, Pak D, Bjørnstad ON.

Ecology. 2019 Feb;100(2):e02558. doi: 10.1002/ecy.2558. Epub 2019 Jan 30.


Mitochondrial and Plastid Genomes from Coralline Red Algae Provide Insights into the Incongruent Evolutionary Histories of Organelles.

Lee JM, Song HJ, Park SI, Lee YM, Jeong SY, Cho TO, Kim JH, Choi HG, Choi CG, Nelson WA, Fredericq S, Bhattacharya D, Yoon HS.

Genome Biol Evol. 2018 Nov 1;10(11):2961-2972. doi: 10.1093/gbe/evy222.


Identification of Novel Protein Lysine Acetyltransferases in Escherichia coli.

Christensen DG, Meyer JG, Baumgartner JT, D'Souza AK, Nelson WC, Payne SH, Kuhn ML, Schilling B, Wolfe AJ.

MBio. 2018 Oct 23;9(5). pii: e01905-18. doi: 10.1128/mBio.01905-18. Erratum in: MBio. 2019 Apr 9;10(2):.


Validated HPLC-MS/MS Method To Quantify Low Levels of Domoic Acid in Plasma and Urine after Subacute Exposure.

Shum S, Kirkwood JS, Jing J, Petroff R, Crouthamel B, Grant KS, Burbacher TM, Nelson WL, Isoherranen N.

ACS Omega. 2018 Sep 30;3(9):12079-12088. doi: 10.1021/acsomega.8b02115. Epub 2018 Sep 27.


Impact of carboplatin hypersensitivity and desensitization on patients with recurrent ovarian cancer.

Altwerger G, Florsheim EB, Menderes G, Black J, Schwab C, Gressel GM, Nelson WK, Carusillo N, Passante T, Huang G, Litkouhi B, Azodi M, Silasi DA, Santin A, Schwartz PE, Ratner ES.

J Cancer Res Clin Oncol. 2018 Dec;144(12):2449-2456. doi: 10.1007/s00432-018-2753-y. Epub 2018 Sep 25.


Vigilance Tasks: Unpleasant, Mentally Demanding, and Stressful Even When Time Flies.

Dillard MB, Warm JS, Funke GJ, Nelson WT, Finomore VS, McClernon CK, Eggemeier FT, Tripp LD, Funke ME.

Hum Factors. 2018 Sep 14:18720818796015. doi: 10.1177/0018720818796015. [Epub ahead of print]


Hypomethylation, endogenous retrovirus expression, and interferon signaling in testicular germ cell tumors.

Haffner MC, Taheri D, Luidy-Imada E, Palsgrove DN, Eich ML, Netto GJ, Matoso A, Nirschl TR, Zheng Q, Hicks JL, Nelson WG, De Marzo AM, Marchionni L, Drake CG, Yegnasubramanian S.

Proc Natl Acad Sci U S A. 2018 Sep 11;115(37):E8580-E8582. doi: 10.1073/pnas.1803292115. Epub 2018 Sep 4. No abstract available.


Sustained influence of infections on prostate-specific antigen concentration: An analysis of changes over 10 years of follow-up.

Langston ME, Pakpahan R, Nevin RL, De Marzo AM, Elliott DJ, Gaydos CA, Isaacs WB, Nelson WG, Sokoll LJ, Zenilman JM, Platz EA, Sutcliffe S.

Prostate. 2018 Sep;78(13):1024-1034. doi: 10.1002/pros.23660. Epub 2018 May 30.


The burden of non-infectious intraocular inflammatory eye diseases: a systematic literature review.

Rice JB, White AG, Scarpati LM, Wan GJ, Nelson WW.

Curr Med Res Opin. 2018 Dec;34(12):2095-2103. doi: 10.1080/03007995.2018.1512961. Epub 2018 Sep 5.


Multiprofessional Ward Rounds for Inpatients With Advanced Cancers: Too Big to Succeed?

Nelson WG, Pronovost PJ, Huff CA.

J Oncol Pract. 2018 Sep;14(9):517-520. doi: 10.1200/JOP.18.00100. Epub 2018 Aug 15. No abstract available.


The impact of within-host ecology on the fitness of a drug-resistant parasite.

Huijben S, Chan BHK, Nelson WA, Read AF.

Evol Med Public Health. 2018 Jun 27;2018(1):127-137. doi: 10.1093/emph/eoy016. eCollection 2018.


Molecular Pathology of High-Grade Prostatic Intraepithelial Neoplasia: Challenges and Opportunities.

Trabzonlu L, Kulac I, Zheng Q, Hicks JL, Haffner MC, Nelson WG, Sfanos KS, Ertunc O, Lotan TL, Heaphy CM, Meeker AK, Yegnasubramanian S, De Marzo AM.

Cold Spring Harb Perspect Med. 2019 Apr 1;9(4). pii: a030403. doi: 10.1101/cshperspect.a030403. Review.


Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.


Prostate Cancer Epigenetics: From Basic Mechanisms to Clinical Implications.

Yegnasubramanian S, De Marzo AM, Nelson WG.

Cold Spring Harb Perspect Med. 2019 Apr 1;9(4). pii: a030445. doi: 10.1101/cshperspect.a030445. Review.


Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone.

Graham EB, Crump AR, Kennedy DW, Arntzen E, Fansler S, Purvine SO, Nicora CD, Nelson W, Tfaily MM, Stegen JC.

Sci Total Environ. 2018 Nov 15;642:742-753. doi: 10.1016/j.scitotenv.2018.05.256. Epub 2018 Jun 17.


An answer to "anticoagulant treatment of cancer-associated venous thromboembolism: Interpreting real-world data with caution".

Streiff MB, Milentijevic D, McCrae K, Yannicelli D, Lejeune D, Nelson WW, Laliberté F, Crivera C, Lefebvre P, Schein J, Khorana AA.

Am J Hematol. 2018 Sep;93(9):E225-E227. doi: 10.1002/ajh.25165. Epub 2018 Aug 7. No abstract available.


BAI1 Suppresses Medulloblastoma Formation by Protecting p53 from Mdm2-Mediated Degradation.

Zhu D, Osuka S, Zhang Z, Reichert ZR, Yang L, Kanemura Y, Jiang Y, You S, Zhang H, Devi NS, Bhattacharya D, Takano S, Gillespie GY, Macdonald T, Tan C, Nishikawa R, Nelson WG, Olson JJ, Van Meir EG.

Cancer Cell. 2018 Jun 11;33(6):1004-1016.e5. doi: 10.1016/j.ccell.2018.05.006.


Analysis of a vinculin homolog in a sponge (phylum Porifera) reveals that vertebrate-like cell adhesions emerged early in animal evolution.

Miller PW, Pokutta S, Mitchell JM, Chodaparambil JV, Clarke DN, Nelson WJ, Weis WI, Nichols SA.

J Biol Chem. 2018 Jul 27;293(30):11674-11686. doi: 10.1074/jbc.RA117.001325. Epub 2018 Jun 7.


Corrigendum: Saliniramus fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from Hot Lake, Washington, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae.

Cole JK, Morton BR, Cardamone HC, Lake HRR, Dohnalkova AC, Kim YM, Kyle JE, Maezato Y, Dana KL, Metz TO, Romine MF, Nelson WC, Lindemann SR.

Int J Syst Evol Microbiol. 2018 Jun;68(6):2116-2123. doi: 10.1099/ijsem.0.002807.


Trajectories of Current and Predicted Satisfaction With One's Life Following a Cancer Diagnosis.

Ellis EM, Nelson WL, Ferrer RA.

Ann Behav Med. 2019 Feb 1;53(2):158-168. doi: 10.1093/abm/kay025.


Cost implications of PSA screening differ by age.

Rao K, Liang S, Cardamone M, Joshu CE, Marmen K, Bhavsar N, Nelson WG, Ballentine Carter H, Albert MC, Platz EA, Pollack CE.

BMC Urol. 2018 May 9;18(1):38. doi: 10.1186/s12894-018-0344-5.


Healthcare resource use and cost associated with varying dosages of extended corticosteroid exposure in a US population.

Rice JB, White AG, Johnson M, Wagh A, Qin Y, Bartels-Peculis L, Ciepielewska G, Nelson WW.

J Med Econ. 2018 Sep;21(9):846-852. doi: 10.1080/13696998.2018.1474750. Epub 2018 May 23.


Quantitative characterization of the relationship between levels of extended corticosteroid use and related adverse events in a US population.

Rice JB, White AG, Johnson M, Wagh A, Qin Y, Bartels-Peculis L, Ciepielewska G, Nelson WW.

Curr Med Res Opin. 2018 Aug;34(8):1519-1527. doi: 10.1080/03007995.2018.1474090. Epub 2018 May 23.


The structure of the nucleus in normal and neoplastic prostate cells: untangling the role of type 2 DNA topoisomerases.

Nelson WG, Haffner MC, Yegnasubramanian S.

Am J Clin Exp Urol. 2018 Apr 1;6(2):107-113. eCollection 2018. Review.


Clinical, Serological, and Molecular Observations from a Case Series Study during the Asian Lineage Zika Virus Outbreak in Grenada during 2016.

Brenciaglia M, Noël TP, Fields PJ, Bidaisee S, Myers TE, Nelson WM, Venkateswaran N, Venkateswaran K, Parameswaran N, Bahadoor A, Yearwood K, Mapp-Alexander V, Mitchell G, LaBeaud AD, Macpherson CNL.

Can J Infect Dis Med Microbiol. 2018 Feb 1;2018:4635647. doi: 10.1155/2018/4635647. eCollection 2018.


Salinivirga fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from a photosynthetic mat, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae.

Cole JK, Morton BR, Cardamone HC, Lake HRR, Dohnalkova AC, Kim YM, Kyle JE, Maezato Y, Dana KL, Metz TO, Romine MF, Nelson WC, Lindemann SR.

Int J Syst Evol Microbiol. 2018 May;68(5):1591-1598. doi: 10.1099/ijsem.0.002715. Epub 2018 Mar 26.


Comprehensive Evaluation of Programmed Death-Ligand 1 Expression in Primary and Metastatic Prostate Cancer.

Haffner MC, Guner G, Taheri D, Netto GJ, Palsgrove DN, Zheng Q, Guedes LB, Kim K, Tsai H, Esopi DM, Lotan TL, Sharma R, Meeker AK, Chinnaiyan AM, Nelson WG, Yegnasubramanian S, Luo J, Mehra R, Antonarakis ES, Drake CG, De Marzo AM.

Am J Pathol. 2018 Jun;188(6):1478-1485. doi: 10.1016/j.ajpath.2018.02.014. Epub 2018 Mar 22.


Interventions to Engage Affective Forecasting in Health-Related Decision Making: A Meta-Analysis.

Ellis EM, Elwyn G, Nelson WL, Scalia P, Kobrin SC, Ferrer RA.

Ann Behav Med. 2018 Feb 5;52(2):157-174. doi: 10.1093/abm/kax024.


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