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La prise de décision entourant l’alimentation par sonde de gastrostomie chez les enfants ayant une atteinte neurologique : engager un dialogue efficace avec les familles.

Mahant S, Cohen E, Nelson KE, Rosenbaum P.

Paediatr Child Health. 2018 May;23(3):214-219. doi: 10.1093/pch/pxy029. Epub 2018 Apr 17. French. No abstract available.


Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas.

Vlčková K, Pafčo B, Petrželková KJ, Modrý D, Todd A, Yeoman CJ, Torralba M, Wilson BA, Stumpf RM, White BA, Nelson KE, Leigh SR, Gomez A.

Front Microbiol. 2018 Jun 15;9:1202. doi: 10.3389/fmicb.2018.01202. eCollection 2018.


Spatial and Environmental Variation of the Human Hair Microbiota.

Brinkac L, Clarke TH, Singh H, Greco C, Gomez A, Torralba MG, Frank B, Nelson KE.

Sci Rep. 2018 Jun 13;8(1):9017. doi: 10.1038/s41598-018-27100-1.


The finding of casual sex partners on the internet, methamphetamine use for sexual pleasure, and incidence of HIV infection among men who have sex with men in Bangkok, Thailand: an observational cohort study.

Piyaraj P, van Griensven F, Holtz TH, Mock PA, Varangrat A, Wimonsate W, Thienkrua W, Tongtoyai J, McNamara A, Chonwattana W, Nelson KE.

Lancet HIV. 2018 May 31. pii: S2352-3018(18)30065-1. doi: 10.1016/S2352-3018(18)30065-1. [Epub ahead of print]


Decision-making around gastrostomy tube feeding in children with neurologic impairment: Engaging effectively with families.

Mahant S, Cohen E, Nelson KE, Rosenbaum P.

Paediatr Child Health. 2018 May;23(3):209-213. doi: 10.1093/pch/pxx193. Epub 2018 May 11.


Epidemiology of Genotype 1 and 2 Hepatitis E Virus Infections.

Nelson KE, Labrique AB, Kmush BL.

Cold Spring Harb Perspect Med. 2018 May 7. pii: a031732. doi: 10.1101/cshperspect.a031732. [Epub ahead of print]


A Ten Year Immunopersistence Study of Hepatitis E Antibodies in Rural Bangladesh.

Kmush BL, Zaman K, Yunus M, Saha P, Nelson KE, Labrique AB.

Am J Epidemiol. 2018 Mar 23. doi: 10.1093/aje/kwy044. [Epub ahead of print]


Microbial metagenome of urinary tract infection.

Moustafa A, Li W, Singh H, Moncera KJ, Torralba MG, Yu Y, Manuel O, Biggs W, Venter JC, Nelson KE, Pieper R, Telenti A.

Sci Rep. 2018 Mar 12;8(1):4333. doi: 10.1038/s41598-018-22660-8.


Emerging Methodologies in Pediatric Palliative Care Research: Six Case Studies.

Nelson KE, Feinstein JA, Gerhardt CA, Rosenberg AR, Widger K, Faerber JA, Feudtner C.

Children (Basel). 2018 Feb 26;5(3). pii: E32. doi: 10.3390/children5030032. Review.


All Things Death and Dying: Health Professional Students Participating in the Death Café Model.

Nelson KE, Wright R, Abshire M, Davidson PM.

J Palliat Med. 2018 Jun;21(6):850-852. doi: 10.1089/jpm.2017.0440. Epub 2018 Feb 2.


Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease.

Moustafa A, Li W, Anderson EL, Wong EHM, Dulai PS, Sandborn WJ, Biggs W, Yooseph S, Jones MB, Venter JC, Nelson KE, Chang JT, Telenti A, Boland BS.

Clin Transl Gastroenterol. 2018 Jan 18;9(1):e132. doi: 10.1038/ctg.2017.58.


Nasopharyngeal Lactobacillus is associated with a reduced risk of childhood wheezing illnesses following acute respiratory syncytial virus infection in infancy.

Rosas-Salazar C, Shilts MH, Tovchigrechko A, Schobel S, Chappell JD, Larkin EK, Gebretsadik T, Halpin RA, Nelson KE, Moore ML, Anderson LJ, Peebles RS Jr, Das SR, Hartert TV.

J Allergy Clin Immunol. 2018 Jan 10. pii: S0091-6749(18)30031-9. doi: 10.1016/j.jaci.2017.10.049. [Epub ahead of print]


Publisher Correction: Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus.

Llorente C, Jepsen P, Inamine T, Wang L, Bluemel S, Wang HJ, Loomba R, Bajaj JS, Schubert ML, Sikaroodi M, Gillevet PM, Xu J, Kisseleva T, Ho SB, DePew J, Du X, Sørensen HT, Vilstrup H, Nelson KE, Brenner DA, Fouts DE, Schnabl B.

Nat Commun. 2017 Dec 12;8(1):2137. doi: 10.1038/s41467-017-01779-8.


Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality.

Raulo A, Ruokolainen L, Lane A, Amato K, Knight R, Leigh S, Stumpf R, White B, Nelson KE, Baden AL, Tecot SR.

J Anim Ecol. 2018 Mar;87(2):388-399. doi: 10.1111/1365-2656.12781. Epub 2017 Dec 5.


Impact of stress on the gut microbiome of free-ranging western lowland gorillas.

Vlčková K, Shutt-Phillips K, Heistermann M, Pafčo B, Petrželková KJ, Todd A, Modrý D, Nelson KE, Wilson BA, Stumpf RM, White BA, Leigh SR, Gomez A.

Microbiology. 2018 Jan;164(1):40-44. doi: 10.1099/mic.0.000587. Epub 2017 Dec 5.


Knowledge regarding hepatitis B mother-to-child transmission among healthcare workers in South China.

Chen Y, Xie C, Zhang Y, Li Y, Ehrhardt S, Thio CL, Nelson KE, Chen Y, Lin CS.

J Viral Hepat. 2018 May;25(5):561-570. doi: 10.1111/jvh.12839. Epub 2018 Jan 24.


A Microbiomic Analysis in African Americans with Colonic Lesions Reveals Streptococcus sp.VT162 as a Marker of Neoplastic Transformation.

Brim H, Yooseph S, Lee E, Sherif ZA, Abbas M, Laiyemo AO, Varma S, Torralba M, Dowd SE, Nelson KE, Pathmasiri W, Sumner S, de Vos W, Liang Q, Yu J, Zoetendal E, Ashktorab H.

Genes (Basel). 2017 Nov 9;8(11). pii: E314. doi: 10.3390/genes8110314.


Bacterial Species Identified on the Skin of Bottlenose Dolphins Off Southern California via Next Generation Sequencing Techniques.

Russo CD, Weller DW, Nelson KE, Chivers SJ, Torralba M, Grimes DJ.

Microb Ecol. 2018 Feb;75(2):303-309. doi: 10.1007/s00248-017-1071-2. Epub 2017 Oct 28.


Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus.

Llorente C, Jepsen P, Inamine T, Wang L, Bluemel S, Wang HJ, Loomba R, Bajaj JS, Schubert ML, Sikaroodi M, Gillevet PM, Xu J, Kisseleva T, Ho SB, DePew J, Du X, Sørensen HT, Vilstrup H, Nelson KE, Brenner DA, Fouts DE, Schnabl B.

Nat Commun. 2017 Oct 16;8(1):837. doi: 10.1038/s41467-017-00796-x. Erratum in: Nat Commun. 2017 Dec 12;8(1):2137.


Strain Level Streptococcus Colonization Patterns during the First Year of Life.

Wright MS, McCorrison J, Gomez AM, Beck E, Harkins D, Shankar J, Mounaud S, Segubre-Mercado E, Mojica AMR, Bacay B, Nzenze SA, Kimaro SZM, Adrian P, Klugman KP, Lucero MG, Nelson KE, Madhi S, Sutton GG, Nierman WC, Losada L.

Front Microbiol. 2017 Sep 6;8:1661. doi: 10.3389/fmicb.2017.01661. eCollection 2017.


Comparative genomics of four Mycoplasma species of the human urogenital tract: Analysis of their core genomes and virulence genes.

Roachford OSE, Nelson KE, Mohapatra BR.

Int J Med Microbiol. 2017 Dec;307(8):508-520. doi: 10.1016/j.ijmm.2017.09.006. Epub 2017 Sep 5.


Host Genetic Control of the Oral Microbiome in Health and Disease.

Gomez A, Espinoza JL, Harkins DM, Leong P, Saffery R, Bockmann M, Torralba M, Kuelbs C, Kodukula R, Inman J, Hughes T, Craig JM, Highlander SK, Jones MB, Dupont CL, Nelson KE.

Cell Host Microbe. 2017 Sep 13;22(3):269-278.e3. doi: 10.1016/j.chom.2017.08.013.


Type 1 Diabetes: Urinary Proteomics and Protein Network Analysis Support Perturbation of Lysosomal Function.

Singh H, Yu Y, Suh MJ, Torralba MG, Stenzel RD, Tovchigrechko A, Thovarai V, Harkins DM, Rajagopala SV, Osborne W, Cogen FR, Kaplowitz PB, Nelson KE, Madupu R, Pieper R.

Theranostics. 2017 Jul 7;7(10):2704-2717. doi: 10.7150/thno.19679. eCollection 2017.


Integrating the microbiome as a resource in the forensics toolkit.

Clarke TH, Gomez A, Singh H, Nelson KE, Brinkac LM.

Forensic Sci Int Genet. 2017 Sep;30:141-147. doi: 10.1016/j.fsigen.2017.06.008. Epub 2017 Jun 27.


Knowledge of and attitudes towards hepatitis B and its transmission from mother to child among pregnant women in Guangdong Province, China.

Han Z, Yin Y, Zhang Y, Ehrhardt S, Thio CL, Nelson KE, Bai X, Hou H.

PLoS One. 2017 Jun 2;12(6):e0178671. doi: 10.1371/journal.pone.0178671. eCollection 2017.


The Importance of Military Conscripts for Surveillance of Human Immunodeficiency Virus Infection and Risk Behavior in Thailand.

Nelson KE, Rangsin R.

Curr HIV Res. 2017;15(3):161-169. doi: 10.2174/1570162X15666170517122011. Review.


The Threat of Antimicrobial Resistance on the Human Microbiome.

Brinkac L, Voorhies A, Gomez A, Nelson KE.

Microb Ecol. 2017 Nov;74(4):1001-1008. doi: 10.1007/s00248-017-0985-z. Epub 2017 May 11. Review.


Development of an oral fluid immunoassay to assess past and recent hepatitis E virus (HEV) infection.

Pisanic N, Rahman A, Saha SK, Labrique AB, Nelson KE, Granger DA, Granger SW, Detrick B, Heaney CD.

J Immunol Methods. 2017 Sep;448:1-8. doi: 10.1016/j.jim.2017.04.012. Epub 2017 May 3.


Epidural Neostigmine versus Fentanyl to Decrease Bupivacaine Use in Patient-controlled Epidural Analgesia during Labor: A Randomized, Double-blind, Controlled Study.

Booth JL, Ross VH, Nelson KE, Harris L, Eisenach JC, Pan PH.

Anesthesiology. 2017 Jul;127(1):50-57. doi: 10.1097/ALN.0000000000001669.


Regarding Perspective Piece from July 2016 "What Do We Know About Chagas Disease in the United States?"

Nelson KE, Ness PM, Leiby DA.

Am J Trop Med Hyg. 2017 Mar;96(3):762. doi: 10.4269/ajtmh.16-1014. No abstract available.


Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease.

Loomba R, Seguritan V, Li W, Long T, Klitgord N, Bhatt A, Dulai PS, Caussy C, Bettencourt R, Highlander SK, Jones MB, Sirlin CB, Schnabl B, Brinkac L, Schork N, Chen CH, Brenner DA, Biggs W, Yooseph S, Venter JC, Nelson KE.

Cell Metab. 2017 May 2;25(5):1054-1062.e5. doi: 10.1016/j.cmet.2017.04.001.


Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies.

Greenwald WW, Klitgord N, Seguritan V, Yooseph S, Venter JC, Garner C, Nelson KE, Li W.

BMC Genomics. 2017 Apr 13;18(1):296. doi: 10.1186/s12864-017-3679-5.


The blood DNA virome in 8,000 humans.

Moustafa A, Xie C, Kirkness E, Biggs W, Wong E, Turpaz Y, Bloom K, Delwart E, Nelson KE, Venter JC, Telenti A.

PLoS Pathog. 2017 Mar 22;13(3):e1006292. doi: 10.1371/journal.ppat.1006292. eCollection 2017 Mar.


Erratum to: A systematic review of the epidemiology of hepatitis E virus in Africa.

Kim JH, Nelson KE, Panzner U, Kasture Y, Labrique AB, Wierzba TF.

BMC Infect Dis. 2017 Mar 3;17(1):187. doi: 10.1186/s12879-017-2274-3. No abstract available.


Status of HBsAg seroprevalence in 15 million rural couples in China: a cross-sectional study.

Zhang L, Wang YY, Huang YJ, Wang QM, Nelson KE, Wang AQ, Shen HP, Liu XL, Zhang YP, Yan DH, Peng ZQ, Zhang HG, Zhang Y, Zhao J, Wang Y, Yang Y, He Y, Xu JH, Liu DJ, Guo TJ, Xin XN, Zhou H, Ma X.

Sci Rep. 2017 Feb 21;7:42822. doi: 10.1038/srep42822.


The association of elevated alanine aminotransferase levels with hepatitis E virus infections among blood donors in China.

Wang M, He M, Wu B, Ke L, Han T, Wang J, Shan H, Ness P, Guo N, Liu Y, Nelson KE.

Transfusion. 2017 Feb;57(2):273-279. doi: 10.1111/trf.13991.


Characterization of Early-Phase Neutrophil Extracellular Traps in Urinary Tract Infections.

Yu Y, Kwon K, Tsitrin T, Bekele S, Sikorski P, Nelson KE, Pieper R.

PLoS Pathog. 2017 Jan 27;13(1):e1006151. doi: 10.1371/journal.ppat.1006151. eCollection 2017 Jan.


Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate.

Amato KR, Van Belle S, Di Fiore A, Estrada A, Stumpf R, White B, Nelson KE, Knight R, Leigh SR.

Microb Ecol. 2017 Jul;74(1):250-258. doi: 10.1007/s00248-017-0938-6. Epub 2017 Jan 26.


The Human Microbiome and Cancer.

Rajagopala SV, Vashee S, Oldfield LM, Suzuki Y, Venter JC, Telenti A, Nelson KE.

Cancer Prev Res (Phila). 2017 Apr;10(4):226-234. doi: 10.1158/1940-6207.CAPR-16-0249. Epub 2017 Jan 17. Review.


Comprehensive Metaproteomic Analyses of Urine in the Presence and Absence of Neutrophil-Associated Inflammation in the Urinary Tract.

Yu Y, Sikorski P, Smith M, Bowman-Gholston C, Cacciabeve N, Nelson KE, Pieper R.

Theranostics. 2017 Jan 1;7(2):238-252. doi: 10.7150/thno.16086. eCollection 2017.


Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy.

Rosas-Salazar C, Shilts MH, Tovchigrechko A, Schobel S, Chappell JD, Larkin EK, Shankar J, Yooseph S, Nelson KE, Halpin RA, Moore ML, Anderson LJ, Peebles RS Jr, Das SR, Hartert TV.

J Infect Dis. 2016 Dec 15;214(12):1924-1928.


Reducing the Bottleneck in Discovery of Novel Antibiotics.

Jones MB, Nierman WC, Shan Y, Frank BC, Spoering A, Ling L, Peoples A, Zullo A, Lewis K, Nelson KE.

Microb Ecol. 2017 Apr;73(3):658-667. doi: 10.1007/s00248-016-0889-3. Epub 2016 Nov 28.


Effect of Macondo Prospect 252 Oil on Microbiota Associated with Pelagic Sargassum in the Northern Gulf of Mexico.

Torralba MG, Franks JS, Gomez A, Yooseph S, Nelson KE, Grimes DJ.

Microb Ecol. 2017 Jan;73(1):91-100. doi: 10.1007/s00248-016-0857-y. Epub 2016 Nov 4.


Effect of Antibiotic Treatment on the Gastrointestinal Microbiome of Free-Ranging Western Lowland Gorillas (Gorilla g. gorilla).

Vlčková K, Gomez A, Petrželková KJ, Whittier CA, Todd AF, Yeoman CJ, Nelson KE, Wilson BA, Stumpf RM, Modrý D, White BA, Leigh SR.

Microb Ecol. 2016 Nov;72(4):943-954. Epub 2016 Mar 16.


Shared genetic effects between hepatic steatosis and fibrosis: A prospective twin study.

Cui J, Chen CH, Lo MT, Schork N, Bettencourt R, Gonzalez MP, Bhatt A, Hooker J, Shaffer K, Nelson KE, Long MT, Brenner DA, Sirlin CB, Loomba R, For The Genetics Of Nafld In Twins Consortium.

Hepatology. 2016 Nov;64(5):1547-1558. doi: 10.1002/hep.28674. Epub 2016 Jul 25.



Kuniholm MH, Nelson KE.

Hepatology. 2016 Nov;64(5):1812-1813. doi: 10.1002/hep.28581. Epub 2016 Apr 28. No abstract available.


HSV-1 clinical isolates with unique in vivo and in vitro phenotypes and insight into genomic differences.

Danaher RJ, Fouts DE, Chan AP, Choi Y, DePew J, McCorrison JM, Nelson KE, Wang C, Miller CS.

J Neurovirol. 2017 Apr;23(2):171-185. doi: 10.1007/s13365-016-0485-9. Epub 2016 Oct 13.


The Oral Microbiome of Children: Development, Disease, and Implications Beyond Oral Health.

Gomez A, Nelson KE.

Microb Ecol. 2017 Feb;73(2):492-503. doi: 10.1007/s00248-016-0854-1. Epub 2016 Sep 14. Review.


A robust ambient temperature collection and stabilization strategy: Enabling worldwide functional studies of the human microbiome.

Anderson EL, Li W, Klitgord N, Highlander SK, Dayrit M, Seguritan V, Yooseph S, Biggs W, Venter JC, Nelson KE, Jones MB.

Sci Rep. 2016 Aug 25;6:31731. doi: 10.1038/srep31731.


Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis.

Rajagopala SV, Yooseph S, Harkins DM, Moncera KJ, Zabokrtsky KB, Torralba MG, Tovchigrechko A, Highlander SK, Pieper R, Sender L, Nelson KE.

BMC Genomics. 2016 Aug 15;17(1):635. doi: 10.1186/s12864-016-2965-y.

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