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Items: 1 to 50 of 630

1.

Vertical transmission of gut microbiome and antimicrobial resistance genes in infants exposed to antibiotics at birth.

Li W, Tapiainen T, Brinkac L, Lorenzi HA, Moncera K, Tejesvi M, Salo J, Nelson KE.

J Infect Dis. 2020 Apr 2. pii: jiaa155. doi: 10.1093/infdis/jiaa155. [Epub ahead of print]

PMID:
32239170
2.

An unsupervised learning approach to identify novel signatures of health and disease from multimodal data.

Shomorony I, Cirulli ET, Huang L, Napier LA, Heister RR, Hicks M, Cohen IV, Yu HC, Swisher CL, Schenker-Ahmed NM, Li W, Nelson KE, Brar P, Kahn AM, Spector TD, Caskey CT, Venter JC, Karow DS, Kirkness EF, Shah N.

Genome Med. 2020 Jan 10;12(1):7. doi: 10.1186/s13073-019-0705-z.

3.

Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling.

O'Rourke A, Beyhan S, Choi Y, Morales P, Chan AP, Espinoza JL, Dupont CL, Meyer KJ, Spoering A, Lewis K, Nierman WC, Nelson KE.

Antimicrob Agents Chemother. 2020 Feb 21;64(3). pii: e01207-19. doi: 10.1128/AAC.01207-19. Print 2020 Feb 21.

4.

A Survey of Music Therapists Working in Pediatric Medical Settings in the United States.

Knott D, Biard M, Nelson KE, Epstein S, Robb SL, Ghetti CM.

J Music Ther. 2020 Feb 25;57(1):34-65. doi: 10.1093/jmt/thz019.

PMID:
31901199
5.

Ethics and the Importance of Good Clinical Practices.

Nelson KE, Janvier A, Nathanson PG, Feudtner C.

Am J Bioeth. 2020 Jan;20(1):67-70. doi: 10.1080/15265161.2019.1688428. No abstract available.

PMID:
31896331
6.

Long-term impact of oral surgery with or without amoxicillin on the oral microbiome-A prospective cohort study.

Menon RK, Gomez A, Brandt BW, Leung YY, Gopinath D, Watt RM, Crielaard W, Nelson KE, Botelho MG.

Sci Rep. 2019 Dec 10;9(1):18761. doi: 10.1038/s41598-019-55056-3.

7.

Host-Microbial Interactions in Systemic Lupus Erythematosus and Periodontitis.

Pessoa L, Aleti G, Choudhury S, Nguyen D, Yaskell T, Zhang Y, Li W, Nelson KE, Neto LLS, Sant'Ana ACP, Freire M.

Front Immunol. 2019 Nov 12;10:2602. doi: 10.3389/fimmu.2019.02602. eCollection 2019.

8.

Persistent Gut Microbial Dysbiosis in Children with Acute Lymphoblastic Leukemia (ALL) During Chemotherapy.

Rajagopala SV, Singh H, Yu Y, Zabokrtsky KB, Torralba MG, Moncera KJ, Frank B, Pieper R, Sender L, Nelson KE.

Microb Ecol. 2019 Nov 21. doi: 10.1007/s00248-019-01448-x. [Epub ahead of print]

PMID:
31754744
9.

A new antibiotic selectively kills Gram-negative pathogens.

Imai Y, Meyer KJ, Iinishi A, Favre-Godal Q, Green R, Manuse S, Caboni M, Mori M, Niles S, Ghiglieri M, Honrao C, Ma X, Guo JJ, Makriyannis A, Linares-Otoya L, Böhringer N, Wuisan ZG, Kaur H, Wu R, Mateus A, Typas A, Savitski MM, Espinoza JL, O'Rourke A, Nelson KE, Hiller S, Noinaj N, Schäberle TF, D'Onofrio A, Lewis K.

Nature. 2019 Dec;576(7787):459-464. doi: 10.1038/s41586-019-1791-1. Epub 2019 Nov 20.

PMID:
31747680
10.

Durable HIV Suppression Among People Who Inject Drugs From a Community-Based Cohort Study in Baltimore, Maryland, 1997-2017.

Genberg BL, Kirk GD, Astemborski J, Lee H, Galai N, Nelson KE, Vlahov D, Celentano DD, Mehta SH.

Am J Epidemiol. 2019 Dec 31;188(12):2086-2096. doi: 10.1093/aje/kwz258.

PMID:
31742591
11.

Optimal Management of Hypotension During Cesarean Delivery Under Spinal Anesthesia.

Fichter JL, Nelson KE.

Adv Anesth. 2019 Dec;37:207-228. doi: 10.1016/j.aan.2019.08.008. Epub 2019 Sep 17. Review. No abstract available.

PMID:
31677657
12.

Gastro-intestinal and oral microbiome signatures associated with healthy aging.

Singh H, Torralba MG, Moncera KJ, DiLello L, Petrini J, Nelson KE, Pieper R.

Geroscience. 2019 Dec;41(6):907-921. doi: 10.1007/s11357-019-00098-8. Epub 2019 Oct 16.

13.

Interplay between the human gut microbiome and host metabolism.

Visconti A, Le Roy CI, Rosa F, Rossi N, Martin TC, Mohney RP, Li W, de Rinaldis E, Bell JT, Venter JC, Nelson KE, Spector TD, Falchi M.

Nat Commun. 2019 Oct 3;10(1):4505. doi: 10.1038/s41467-019-12476-z.

14.

Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease.

Loomba R, Seguritan V, Li W, Long T, Klitgord N, Bhatt A, Dulai PS, Caussy C, Bettencourt R, Highlander SK, Jones MB, Sirlin CB, Schnabl B, Brinkac L, Schork N, Chen CH, Brenner DA, Biggs W, Yooseph S, Venter JC, Nelson KE.

Cell Metab. 2019 Sep 3;30(3):607. doi: 10.1016/j.cmet.2019.08.002. No abstract available.

PMID:
31484056
15.

Erratum: Long-term Antibody Persistence After Hepatitis E Virus Infection and Vaccination in Dongtai, China.

Kmush BL, Yu H, Huang S, Zhang X, Wu T, Nelson KE, Labrique AB.

Open Forum Infect Dis. 2019 Aug 1;6(8). pii: ofz224. doi: 10.1093/ofid/ofz224. No abstract available.

16.

Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints.

Gomez A, Sharma AK, Mallott EK, Petrzelkova KJ, Jost Robinson CA, Yeoman CJ, Carbonero F, Pafco B, Rothman JM, Ulanov A, Vlckova K, Amato KR, Schnorr SL, Dominy NJ, Modry D, Todd A, Torralba M, Nelson KE, Burns MB, Blekhman R, Remis M, Stumpf RM, Wilson BA, Gaskins HR, Garber PA, White BA, Leigh SR.

mSphere. 2019 Jul 31;4(4). pii: e00271-19. doi: 10.1128/mSphere.00271-19.

17.

Collaborative International Research in Clinical and Longitudinal Experience Study in NMOSD.

Cook LJ, Rose JW, Alvey JS, Jolley AM, Kuhn R, Marron B, Pederson M, Enriquez R, Yearley J, McKechnie S, Han MH, Tomczak AJ, Levy M, Mealy MA, Coleman J, Bennett JL, Johnson R, Barnes-Garcia M, Traboulsee AL, Carruthers RL, Lee LE, Schubert JJ, McMullen K, Kister I, Rimler Z, Reid A, Sicotte NL, Planchon SM, Cohen JA, Ivancic D, Sedlak JL, Sand IK, Repovic P, Amezcua L, Pruitt A, Amundson E, Chitnis T, Mullin DS, Klawiter EC, Russo AW, Riley CS, Onomichi KB, Levine L, Nelson KE, Nealon NM, Engel C, Kruse-Hoyer M, Marcille M, Tornes L, Rumpf A, Greer A, Kenneally Behne M, Rodriguez RR, Behne DW, Blackway DW, Coords B, Blaschke TF, Sheard J, Smith TJ, Behne JM, Yeaman MR; Guthy-Jackson Charitable Foundation International Clinical Consortium (GJCF–ICC).

Neurol Neuroimmunol Neuroinflamm. 2019 Jun 28;6(5):e583. doi: 10.1212/NXI.0000000000000583. eCollection 2019 Sep.

18.

Gut microbiome composition of wild western lowland gorillas is associated with individual age and sex factors.

Pafčo B, Sharma AK, Petrželková KJ, Vlčková K, Todd A, Yeoman CJ, Wilson BA, Stumpf R, White BA, Nelson KE, Leigh S, Gomez A.

Am J Phys Anthropol. 2019 Jul;169(3):575-585. doi: 10.1002/ajpa.23842. Epub 2019 Apr 25.

PMID:
31025322
19.

Long-term Antibody Persistence After Hepatitis E Virus Infection and Vaccination in Dongtai, China.

Kmush BL, Yu H, Huang S, Zhang X, Wu T, Nelson KE, Labrique AB.

Open Forum Infect Dis. 2019 Mar 28;6(4):ofz144. doi: 10.1093/ofid/ofz144. eCollection 2019 Apr. Erratum in: Open Forum Infect Dis. 2019 Aug 1;6(8):.

20.

Self-Assembled STrap for Global Proteomics and Salivary Biomarker Discovery.

Lin YH, Eguez RV, Torralba MG, Singh H, Golusinski P, Golusinski W, Masternak M, Nelson KE, Freire M, Yu Y.

J Proteome Res. 2019 Apr 5;18(4):1907-1915. doi: 10.1021/acs.jproteome.9b00037. Epub 2019 Mar 21.

PMID:
30848925
21.

An outbreak of HIV infection among people who inject drugs linked to injection of propofol in Taiwan.

Huang YC, Huang YF, Lin MH, Yang JY, Liao YH, Lo HY, Latkin C, Nelson KE.

PLoS One. 2019 Feb 8;14(2):e0210210. doi: 10.1371/journal.pone.0210210. eCollection 2019.

22.

Probable transmission of hepatitis E virus (HEV) via transfusion in the United States.

Ticehurst JR, Pisanic N, Forman MS, Ordak C, Heaney CD, Ong E, Linnen JM, Ness PM, Guo N, Shan H, Nelson KE.

Transfusion. 2019 Mar;59(3):1024-1034. doi: 10.1111/trf.15140. Epub 2019 Jan 31.

23.

Survival and Health Care Use After Feeding Tube Placement in Children With Neurologic Impairment.

Nelson KE, Rosella LC, Mahant S, Cohen E, Guttmann A.

Pediatrics. 2019 Feb;143(2). pii: e20182863. doi: 10.1542/peds.2018-2863.

24.

OMeta: an ontology-based, data-driven metadata tracking system.

Singh I, Kuscuoglu M, Harkins DM, Sutton G, Fouts DE, Nelson KE.

BMC Bioinformatics. 2019 Jan 7;20(1):8. doi: 10.1186/s12859-018-2580-9.

25.

Xylitol and sorbitol effects on the microbiome of saliva and plaque.

Rafeek R, Carrington CVF, Gomez A, Harkins D, Torralba M, Kuelbs C, Addae J, Moustafa A, Nelson KE.

J Oral Microbiol. 2018 Oct 23;11(1):1536181. doi: 10.1080/20002297.2018.1536181. eCollection 2019.

26.

A novel approach for the identification and phylogenetic delineation of human Mycoplasma species and strains using genomic segment sequence analysis.

Roachford OSE, Nelson KE, Mohapatra BR.

Infect Genet Evol. 2019 Mar;68:68-76. doi: 10.1016/j.meegid.2018.12.002. Epub 2018 Dec 4.

PMID:
30529087
27.

Supragingival Plaque Microbiome Ecology and Functional Potential in the Context of Health and Disease.

Espinoza JL, Harkins DM, Torralba M, Gomez A, Highlander SK, Jones MB, Leong P, Saffery R, Bockmann M, Kuelbs C, Inman JM, Hughes T, Craig JM, Nelson KE, Dupont CL.

mBio. 2018 Nov 27;9(6). pii: e01631-18. doi: 10.1128/mBio.01631-18.

28.

Co-occurrence of Anaerobes in Human Chronic Wounds.

Choi Y, Banerjee A, McNish S, Couch KS, Torralba MG, Lucas S, Tovchigrechko A, Madupu R, Yooseph S, Nelson KE, Shanmugam VK, Chan AP.

Microb Ecol. 2019 Apr;77(3):808-820. doi: 10.1007/s00248-018-1231-z. Epub 2018 Aug 23.

PMID:
30141127
29.

Papio spp. Colon microbiome and its link to obesity in pregnancy.

Li X, Rensing C, Taylor WL, Costelle C, Brejnrod AD, Ferry RJ Jr, Higgins PB, Folli F, Kottapalli KR, Hubbard GB, Dick EJ Jr, Yooseph S, Nelson KE, Schlabritz-Loutsevitch N.

J Med Primatol. 2018 Dec;47(6):393-401. doi: 10.1111/jmp.12366. Epub 2018 Jul 24.

30.

Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas.

Vlčková K, Pafčo B, Petrželková KJ, Modrý D, Todd A, Yeoman CJ, Torralba M, Wilson BA, Stumpf RM, White BA, Nelson KE, Leigh SR, Gomez A.

Front Microbiol. 2018 Jun 15;9:1202. doi: 10.3389/fmicb.2018.01202. eCollection 2018.

31.

Spatial and Environmental Variation of the Human Hair Microbiota.

Brinkac L, Clarke TH, Singh H, Greco C, Gomez A, Torralba MG, Frank B, Nelson KE.

Sci Rep. 2018 Jun 13;8(1):9017. doi: 10.1038/s41598-018-27100-1.

32.

The finding of casual sex partners on the internet, methamphetamine use for sexual pleasure, and incidence of HIV infection among men who have sex with men in Bangkok, Thailand: an observational cohort study.

Piyaraj P, van Griensven F, Holtz TH, Mock PA, Varangrat A, Wimonsate W, Thienkrua W, Tongtoyai J, McNamara A, Chonwattana W, Nelson KE.

Lancet HIV. 2018 Jul;5(7):e379-e389. doi: 10.1016/S2352-3018(18)30065-1. Epub 2018 Jun 1. Erratum in: Lancet HIV. 2018 Jul;5(7):e340.

33.

Decision-making around gastrostomy tube feeding in children with neurologic impairment: Engaging effectively with families.

Mahant S, Cohen E, Nelson KE, Rosenbaum P.

Paediatr Child Health. 2018 May;23(3):209-213. doi: 10.1093/pch/pxx193. Epub 2018 May 11. English, French.

34.

Epidemiology of Genotype 1 and 2 Hepatitis E Virus Infections.

Nelson KE, Labrique AB, Kmush BL.

Cold Spring Harb Perspect Med. 2019 Jun 3;9(6). pii: a031732. doi: 10.1101/cshperspect.a031732. Review.

PMID:
29735579
35.

A Ten Year Immunopersistence Study of Hepatitis E Antibodies in Rural Bangladesh.

Kmush BL, Zaman K, Yunus M, Saha P, Nelson KE, Labrique AB.

Am J Epidemiol. 2018 Mar 23. doi: 10.1093/aje/kwy044. [Epub ahead of print]

PMID:
29584805
36.

Microbial metagenome of urinary tract infection.

Moustafa A, Li W, Singh H, Moncera KJ, Torralba MG, Yu Y, Manuel O, Biggs W, Venter JC, Nelson KE, Pieper R, Telenti A.

Sci Rep. 2018 Mar 12;8(1):4333. doi: 10.1038/s41598-018-22660-8.

37.

Emerging Methodologies in Pediatric Palliative Care Research: Six Case Studies.

Nelson KE, Feinstein JA, Gerhardt CA, Rosenberg AR, Widger K, Faerber JA, Feudtner C.

Children (Basel). 2018 Feb 26;5(3). pii: E32. doi: 10.3390/children5030032. Review.

38.

All Things Death and Dying: Health Professional Students Participating in the Death Café Model.

Nelson KE, Wright R, Abshire M, Davidson PM.

J Palliat Med. 2018 Jun;21(6):850-852. doi: 10.1089/jpm.2017.0440. Epub 2018 Feb 2.

PMID:
29393728
39.

Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease.

Moustafa A, Li W, Anderson EL, Wong EHM, Dulai PS, Sandborn WJ, Biggs W, Yooseph S, Jones MB, Venter JC, Nelson KE, Chang JT, Telenti A, Boland BS.

Clin Transl Gastroenterol. 2018 Jan 18;9(1):e132. doi: 10.1038/ctg.2017.58.

40.

Nasopharyngeal Lactobacillus is associated with a reduced risk of childhood wheezing illnesses following acute respiratory syncytial virus infection in infancy.

Rosas-Salazar C, Shilts MH, Tovchigrechko A, Schobel S, Chappell JD, Larkin EK, Gebretsadik T, Halpin RA, Nelson KE, Moore ML, Anderson LJ, Peebles RS Jr, Das SR, Hartert TV.

J Allergy Clin Immunol. 2018 Nov;142(5):1447-1456.e9. doi: 10.1016/j.jaci.2017.10.049. Epub 2018 Jan 10.

41.

Publisher Correction: Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus.

Llorente C, Jepsen P, Inamine T, Wang L, Bluemel S, Wang HJ, Loomba R, Bajaj JS, Schubert ML, Sikaroodi M, Gillevet PM, Xu J, Kisseleva T, Ho SB, DePew J, Du X, Sørensen HT, Vilstrup H, Nelson KE, Brenner DA, Fouts DE, Schnabl B.

Nat Commun. 2017 Dec 12;8(1):2137. doi: 10.1038/s41467-017-01779-8.

42.

Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality.

Raulo A, Ruokolainen L, Lane A, Amato K, Knight R, Leigh S, Stumpf R, White B, Nelson KE, Baden AL, Tecot SR.

J Anim Ecol. 2018 Mar;87(2):388-399. doi: 10.1111/1365-2656.12781. Epub 2017 Dec 5.

PMID:
29205327
43.

Impact of stress on the gut microbiome of free-ranging western lowland gorillas.

Vlčková K, Shutt-Phillips K, Heistermann M, Pafčo B, Petrželková KJ, Todd A, Modrý D, Nelson KE, Wilson BA, Stumpf RM, White BA, Leigh SR, Gomez A.

Microbiology. 2018 Jan;164(1):40-44. doi: 10.1099/mic.0.000587. Epub 2017 Dec 5.

PMID:
29205130
44.

Knowledge regarding hepatitis B mother-to-child transmission among healthcare workers in South China.

Chen Y, Xie C, Zhang Y, Li Y, Ehrhardt S, Thio CL, Nelson KE, Chen Y, Lin CS.

J Viral Hepat. 2018 May;25(5):561-570. doi: 10.1111/jvh.12839. Epub 2018 Jan 24.

PMID:
29194878
45.

A Microbiomic Analysis in African Americans with Colonic Lesions Reveals Streptococcus sp.VT162 as a Marker of Neoplastic Transformation.

Brim H, Yooseph S, Lee E, Sherif ZA, Abbas M, Laiyemo AO, Varma S, Torralba M, Dowd SE, Nelson KE, Pathmasiri W, Sumner S, de Vos W, Liang Q, Yu J, Zoetendal E, Ashktorab H.

Genes (Basel). 2017 Nov 9;8(11). pii: E314. doi: 10.3390/genes8110314.

46.

Bacterial Species Identified on the Skin of Bottlenose Dolphins Off Southern California via Next Generation Sequencing Techniques.

Russo CD, Weller DW, Nelson KE, Chivers SJ, Torralba M, Grimes DJ.

Microb Ecol. 2018 Feb;75(2):303-309. doi: 10.1007/s00248-017-1071-2. Epub 2017 Oct 28.

PMID:
29080910
47.

Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus.

Llorente C, Jepsen P, Inamine T, Wang L, Bluemel S, Wang HJ, Loomba R, Bajaj JS, Schubert ML, Sikaroodi M, Gillevet PM, Xu J, Kisseleva T, Ho SB, DePew J, Du X, Sørensen HT, Vilstrup H, Nelson KE, Brenner DA, Fouts DE, Schnabl B.

Nat Commun. 2017 Oct 16;8(1):837. doi: 10.1038/s41467-017-00796-x. Erratum in: Nat Commun. 2017 Dec 12;8(1):2137.

48.

Strain Level Streptococcus Colonization Patterns during the First Year of Life.

Wright MS, McCorrison J, Gomez AM, Beck E, Harkins D, Shankar J, Mounaud S, Segubre-Mercado E, Mojica AMR, Bacay B, Nzenze SA, Kimaro SZM, Adrian P, Klugman KP, Lucero MG, Nelson KE, Madhi S, Sutton GG, Nierman WC, Losada L.

Front Microbiol. 2017 Sep 6;8:1661. doi: 10.3389/fmicb.2017.01661. eCollection 2017.

49.

Comparative genomics of four Mycoplasma species of the human urogenital tract: Analysis of their core genomes and virulence genes.

Roachford OSE, Nelson KE, Mohapatra BR.

Int J Med Microbiol. 2017 Dec;307(8):508-520. doi: 10.1016/j.ijmm.2017.09.006. Epub 2017 Sep 5.

PMID:
28927691
50.

Host Genetic Control of the Oral Microbiome in Health and Disease.

Gomez A, Espinoza JL, Harkins DM, Leong P, Saffery R, Bockmann M, Torralba M, Kuelbs C, Kodukula R, Inman J, Hughes T, Craig JM, Highlander SK, Jones MB, Dupont CL, Nelson KE.

Cell Host Microbe. 2017 Sep 13;22(3):269-278.e3. doi: 10.1016/j.chom.2017.08.013.

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