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Items: 1 to 50 of 779

1.

Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Nov 13. doi: 10.1038/s41588-018-0293-7. [Epub ahead of print]

PMID:
30425353
2.

Objectively measured pediatric obesity prevalence using the OneFlorida Clinical Research Consortium.

Lemas DJ, Cardel MI, Filipp SL, Hall J, Essner RZ, Smith SR, Nadglowski J, Donahoo WT, Cooper-DeHoff RM, Nelson DR, Hogan WR, Shenkman EA, Gurka MJ, Janicke DM.

Obes Res Clin Pract. 2018 Oct 31. pii: S1871-403X(18)30269-2. doi: 10.1016/j.orcp.2018.10.002. [Epub ahead of print]

PMID:
30391132
3.

The probiotic bacterium, Phaeobacter inhibens, down-regulates virulence factor transcription in the shellfish pathogen, Vibrio coralliilyticus, by N-acyl homoserine lactone production.

Zhao W, Yuan T, Piva C, Spinard EJ, Schuttert C, Rowley DC, Nelson DR.

Appl Environ Microbiol. 2018 Nov 2. pii: AEM.01545-18. doi: 10.1128/AEM.01545-18. [Epub ahead of print]

PMID:
30389771
4.

Physical interactions reduce the power of natural selection in growing yeast colonies.

Giometto A, Nelson DR, Murray AW.

Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11448-11453. doi: 10.1073/pnas.1809587115. Epub 2018 Oct 23.

5.

Status of Direct-acting Antiviral Therapy for HCV Infection and Remaining Challenges.

Baumert TF, Berg T, Lim JK, Nelson DR.

Gastroenterology. 2018 Oct 17. pii: S0016-5085(18)35155-2. doi: 10.1053/j.gastro.2018.10.024. [Epub ahead of print]

PMID:
30342035
6.

Diversity and evolution of cytochromes P450 in stramenopiles.

Teng L, Fan X, Nelson DR, Han W, Zhang X, Xu D, Renault H, Markov GV, Ye N.

Planta. 2018 Oct 19. doi: 10.1007/s00425-018-3028-1. [Epub ahead of print]

PMID:
30341489
7.

Firefly genomes illuminate parallel origins of bioluminescence in beetles.

Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, Nelson DR, Lewis SM, Shigenobu S, Bybee SM, Larracuente AM, Oba Y, Weng JK.

Elife. 2018 Oct 16;7. pii: e36495. doi: 10.7554/eLife.36495.

8.

Marine tardigrades of the Bahamas with the description of two new species and updated keys to the species of Anisonyches and Archechiniscus.

Bartels PJ, Fontoura P, Nelson DR.

Zootaxa. 2018 May 14;4420(1):43-70. doi: 10.11646/zootaxa.4420.1.3.

PMID:
30313553
9.

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Nov;50(11):1565-1573. doi: 10.1038/s41588-018-0237-2. Epub 2018 Oct 8. Erratum in: Nat Genet. 2018 Nov 13;:.

PMID:
30297971
10.

Impact of all-oral direct-acting antivirals on clinical and economic outcomes in chronic hepatitis C patients in the U.S.

Park H, Wang W, Henry L, Nelson DR.

Hepatology. 2018 Oct 5. doi: 10.1002/hep.30303. [Epub ahead of print]

PMID:
30289989
11.

Hypoglycemia Emergencies: Factors Associated with Prehospital Care, Transportation Status, Emergency Department Disposition, and Cost.

Kaufmann MA, Nelson DR, Kaushik P, Mann NC, Mitchell B.

Prehosp Emerg Care. 2018 Nov 2:1-12. doi: 10.1080/10903127.2018.1528322. [Epub ahead of print]

PMID:
30259772
12.

Characterization of adult obesity in Florida using the OneFlorida clinical research consortium.

Filipp SL, Cardel M, Hall J, Essner RZ, Lemas DJ, Janicke DM, Smith SR, Nadglowski J, Troy Donahoo W, Cooper-DeHoff RM, Nelson DR, Hogan WR, Shenkman EA, Gurka MJ.

Obes Sci Pract. 2018 Jun 15;4(4):308-317. doi: 10.1002/osp4.274. eCollection 2018 Aug.

13.

Trends in Depressed Mood and Suicidal Behaviors Among Female High School Students Who Engaged in Physical Fighting.

Ford JH, Zollinger TW, Zhang J, O'Neil J, Nelson DR, Steele GK.

J Interpers Violence. 2018 Aug 24:886260518790599. doi: 10.1177/0886260518790599. [Epub ahead of print]

PMID:
30141730
14.

Structural and catalytic properties of the peroxygenase P450 enzyme CYP152K6 from Bacillus methanolicus.

Girvan HM, Poddar H, McLean KJ, Nelson DR, Hollywood KA, Levy CW, Leys D, Munro AW.

J Inorg Biochem. 2018 Nov;188:18-28. doi: 10.1016/j.jinorgbio.2018.08.002. Epub 2018 Aug 3.

15.

A comprehensive assessment of patient reported symptom burden, medical comorbidities, and functional well being in patients initiating direct acting antiviral therapy for chronic hepatitis C: Results from a large US multi-center observational study.

Evon DM, Stewart PW, Amador J, Serper M, Lok AS, Sterling RK, Sarkar S, Golin CE, Reeve BB, Nelson DR, Reau N, Lim JK, Reddy KR, Di Bisceglie AM, Fried MW.

PLoS One. 2018 Aug 1;13(8):e0196908. doi: 10.1371/journal.pone.0196908. eCollection 2018.

16.

Comparison of Programmed Death Ligand-1 Immunohistochemical Staining Between Endobronchial Ultrasound Transbronchial Needle Aspiration and Resected Lung Cancer Specimens.

Sakata KK, Midthun DE, Mullon JJ, Kern RM, Nelson DR, Edell ES, Schiavo DN, Jett JR, Aubry MC.

Chest. 2018 Oct;154(4):827-837. doi: 10.1016/j.chest.2018.07.017. Epub 2018 Jul 27.

PMID:
30059678
17.

Expression, Purification, and Biochemical Characterization of the Flavocytochrome P450 CYP505A30 from Myceliophthora thermophila.

Baker GJ, Girvan HM, Matthews S, McLean KJ, Golovanova M, Waltham TN, Rigby SEJ, Nelson DR, Blankley RT, Munro AW.

ACS Omega. 2017 Aug 31;2(8):4705-4724. doi: 10.1021/acsomega.7b00450. Epub 2017 Aug 18.

18.

Paclitaxel-coated balloon dilation for central airway obstruction.

Sakata KK, Nelson DR, Mullon JJ, Midthun DE, Edell ES, Kern RM.

Respir Med Case Rep. 2018 May 16;24:129-132. doi: 10.1016/j.rmcr.2018.05.011. eCollection 2018.

19.

Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome.

Ilc T, Arista G, Tavares R, Navrot N, Duchêne E, Velt A, Choulet F, Paux E, Fischer M, Nelson DR, Hugueney P, Werck-Reichhart D, Rustenholz C.

PLoS One. 2018 Jun 28;13(6):e0199902. doi: 10.1371/journal.pone.0199902. eCollection 2018.

20.

Blooming of Unusual Cytochrome P450s by Tandem Duplication in the Pathogenic Fungus Conidiobolus coronatus.

Ngwenya ML, Chen W, Basson AK, Shandu JS, Yu JH, Nelson DR, Syed K.

Int J Mol Sci. 2018 Jun 9;19(6). pii: E1711. doi: 10.3390/ijms19061711.

21.

Mindfulness Meditation and Interprofessional Cardiopulmonary Resuscitation: A Mixed-Methods Pilot Study.

Kelm DJ, Ridgeway JL, Gas BL, Mohan M, Cook DA, Nelson DR, Benzo RP.

Teach Learn Med. 2018 May 18:1-11. doi: 10.1080/10401334.2018.1462186. [Epub ahead of print]

PMID:
29775080
22.

Draft Genome Sequence of Loktanella maritima Strain YPC211, a Commensal Bacterium of the American Lobster (Homarus americanus).

Ranson HJ, LaPorte J, Spinard E, Gomez-Chiarri M, Nelson DR, Rowley DC.

Genome Announc. 2018 May 3;6(18). pii: e00314-18. doi: 10.1128/genomeA.00314-18.

23.

Comparative analyses and structural insights of the novel cytochrome P450 fusion protein family CYP5619 in Oomycetes.

Bamal HD, Chen W, Mashele SS, Nelson DR, Kappo AP, Mosa RA, Yu JH, Tuszynski JA, Syed K.

Sci Rep. 2018 Apr 26;8(1):6597. doi: 10.1038/s41598-018-25044-0.

24.

Draft Genome Sequence of the Putative Marine Pathogen Aquimarina sp. Strain I32.4.

Ranson HJ, LaPorte J, Spinard E, Chistoserdov AY, Gomez-Chiarri M, Nelson DR, Rowley DC.

Genome Announc. 2018 Apr 26;6(17). pii: e00313-18. doi: 10.1128/genomeA.00313-18.

25.

A clarification for the subgenera of Paramacrobiotus Guidetti, Schill, Bertolani, Dandekar and Wolf, 2009, with respect to the International Code of Zoological Nomenclature.

Marley NJ, Kaczmarek Ł, Gawlak M, Bartels PJ, Nelson DR, Roszkowska M, D S, Degma P.

Zootaxa. 2018 Apr 9;4407(1):130-134. doi: 10.11646/zootaxa.4407.1.9.

PMID:
29690210
26.

Draft Genome Sequence of Bowmanella denitrificans JL63, a Bacterium Isolated from Whiteleg Shrimp (Litopenaeus vannamei) That Can Inhibit the Growth of Vibrio parahaemolyticus.

LaPorte JP, Spinard EJ, Gomez-Chiarri M, Rowley DC, Mekalanos JJ, Nelson DR.

Genome Announc. 2018 Apr 5;6(14). pii: e00215-18. doi: 10.1128/genomeA.00215-18.

27.

Influences of Native American land use on the Colonial Euro-American settlement of the South Carolina Piedmont.

Coughlan MR, Nelson DR.

PLoS One. 2018 Mar 29;13(3):e0195036. doi: 10.1371/journal.pone.0195036. eCollection 2018.

28.

Hepatitis C Virus Screening Trends: Serial Cross-Sectional Analysis of the National Health Interview Survey Population, 2013-2015.

Kasting ML, Giuliano AR, Reich RR, Roetzheim RG, Nelson DR, Shenkman E, Vadaparampil ST.

Cancer Epidemiol Biomarkers Prev. 2018 Apr;27(4):503-513. doi: 10.1158/1055-9965.EPI-17-0855. Epub 2018 Mar 27.

PMID:
29588306
29.

Immunogenicity of the meningococcal polysaccharide conjugate vaccine in pediatric kidney transplant patients.

Nelson DR, Fadrowski J, Neu A.

Pediatr Nephrol. 2018 Jun;33(6):1037-1043. doi: 10.1007/s00467-017-3878-y. Epub 2018 Mar 20.

PMID:
29557497
30.

Evaluating the Efficacy of a Registry linked to a Consent to Re-Contact Program and Communication Strategies for Recruiting and Enrolling Participants into Clinical Trials.

Flood-Grady E, Clark VC, Bauer A, Morelli L, Horne P, Krieger JL, Nelson DR.

Contemp Clin Trials Commun. 2017 Dec;8:62-66. doi: 10.1016/j.conctc.2017.08.005. Epub 2017 Aug 24.

31.

Prevalence and impact of baseline resistance-associated substitutions on the efficacy of ledipasvir/sofosbuvir or simeprevir/sofosbuvir against GT1 HCV infection.

Wang GP, Terrault N, Reeves JD, Liu L, Li E, Zhao L, Lim JK, Morelli G, Kuo A, Levitsky J, Sherman KE, Frazier LM, Ramani A, Peter J, Akuskevich L, Fried MW, Nelson DR.

Sci Rep. 2018 Feb 16;8(1):3199. doi: 10.1038/s41598-018-21303-2.

32.

Safety and Effectiveness of Ledipasvir and Sofosbuvir, With or Without Ribavirin, in Treatment-Experienced Patients With Genotype 1 Hepatitis C Virus Infection and Cirrhosis.

Lim JK, Liapakis AM, Shiffman ML, Lok AS, Zeuzem S, Terrault NA, Park JS, Landis CS, Hassan M, Gallant J, Kuo A, Pockros PJ, Vainorius M, Akushevich L, Michael L, Fried MW, Nelson DR, Ben-Ari Z; HCV-TARGET Study Group.

Clin Gastroenterol Hepatol. 2018 Nov;16(11):1811-1819.e4. doi: 10.1016/j.cgh.2017.12.037. Epub 2018 Jan 3.

PMID:
29306043
33.

Genetic drift and selection in many-allele range expansions.

Weinstein BT, Lavrentovich MO, Möbius W, Murray AW, Nelson DR.

PLoS Comput Biol. 2017 Dec 1;13(12):e1005866. doi: 10.1371/journal.pcbi.1005866. eCollection 2017 Dec.

34.

Isocitrate dehydrogenase mutation in Vibrio anguillarum results in virulence attenuation and immunoprotection in rainbow trout (Oncorhynchus mykiss).

Mou X, Spinard EJ, Hillman SL, Nelson DR.

BMC Microbiol. 2017 Nov 14;17(1):217. doi: 10.1186/s12866-017-1124-1.

35.

Thermal crumpling of perforated two-dimensional sheets.

Yllanes D, Bhabesh SS, Nelson DR, Bowick MJ.

Nat Commun. 2017 Nov 9;8(1):1381. doi: 10.1038/s41467-017-01551-y.

36.

Multisite Investigation of Outcomes With Implementation of CYP2C19 Genotype-Guided Antiplatelet Therapy After Percutaneous Coronary Intervention.

Cavallari LH, Lee CR, Beitelshees AL, Cooper-DeHoff RM, Duarte JD, Voora D, Kimmel SE, McDonough CW, Gong Y, Dave CV, Pratt VM, Alestock TD, Anderson RD, Alsip J, Ardati AK, Brott BC, Brown L, Chumnumwat S, Clare-Salzler MJ, Coons JC, Denny JC, Dillon C, Elsey AR, Hamadeh IS, Harada S, Hillegass WB, Hines L, Horenstein RB, Howell LA, Jeng LJB, Kelemen MD, Lee YM, Magvanjav O, Montasser M, Nelson DR, Nutescu EA, Nwaba DC, Pakyz RE, Palmer K, Peterson JF, Pollin TI, Quinn AH, Robinson SW, Schub J, Skaar TC, Smith DM, Sriramoju VB, Starostik P, Stys TP, Stevenson JM, Varunok N, Vesely MR, Wake DT, Weck KE, Weitzel KW, Wilke RA, Willig J, Zhao RY, Kreutz RP, Stouffer GA, Empey PE, Limdi NA, Shuldiner AR, Winterstein AG, Johnson JA; IGNITE Network.

JACC Cardiovasc Interv. 2018 Jan 22;11(2):181-191. doi: 10.1016/j.jcin.2017.07.022. Epub 2017 Nov 1.

PMID:
29102571
37.

Correction to: CYP79 P450 monooxygenases in gymnosperms: CYP79A118 is associated with the formation of taxiphyllin in Taxus baccata.

Luck K, Jia Q, Huber M, Handrick V, Wong GK, Nelson DR, Chen F, Gershenzon J, Köllner TG.

Plant Mol Biol. 2017 Dec;95(6):647. doi: 10.1007/s11103-017-0674-9.

38.

Factors associated with stroke, myocardial infarction, ischemic heart disease, unstable angina, or mortality in patients from real world clinical practice with newly-diagnosed type 2 diabetes and early glycemic control.

Alatorre CI, Hoogwerf BJ, Deeg MA, Nelson DR, Hunter TM, Ng WT, Rekhter MD.

Curr Med Res Opin. 2018 Feb;34(2):337-343. doi: 10.1080/03007995.2017.1396969. Epub 2017 Nov 24.

PMID:
29065729
39.

Glecaprevir and Pibrentasvir in Patients with HCV and Severe Renal Impairment.

Gane E, Lawitz E, Pugatch D, Papatheodoridis G, Bräu N, Brown A, Pol S, Leroy V, Persico M, Moreno C, Colombo M, Yoshida EM, Nelson DR, Collins C, Lei Y, Kosloski M, Mensa FJ.

N Engl J Med. 2017 Oct 12;377(15):1448-1455. doi: 10.1056/NEJMoa1704053.

40.

Methylene Blue for Bronchopleural Fistula Localization.

Sakata KK, Nasim F, Schiavo DN, Nelson DR, Kern RM, Mullon JJ.

J Bronchology Interv Pulmonol. 2018 Jan;25(1):63-66. doi: 10.1097/LBR.0000000000000423.

PMID:
28937444
41.

Intracellular spectral recompositioning of light enhances algal photosynthetic efficiency.

Fu W, Chaiboonchoe A, Khraiwesh B, Sultana M, Jaiswal A, Jijakli K, Nelson DR, Al-Hrout A, Baig B, Amin A, Salehi-Ashtiani K.

Sci Adv. 2017 Sep 1;3(9):e1603096. doi: 10.1126/sciadv.1603096. eCollection 2017 Sep.

42.

Chronic hepatitis C virus (HCV) increases the risk of chronic kidney disease (CKD) while effective HCV treatment decreases the incidence of CKD.

Park H, Chen C, Wang W, Henry L, Cook RL, Nelson DR.

Hepatology. 2017 Sep 5. doi: 10.1002/hep.29505. [Epub ahead of print]

43.

A Novel Vaccine Targeting Glypican-3 as a Treatment for Hepatocellular Carcinoma.

Wu Q, Pi L, Le Trinh T, Zuo C, Xia M, Jiao Y, Hou Z, Jo S, Puszyk W, Pham K, Nelson DR, Robertson K, Ostrov D, Rameshwar P, Xia CQ, Liu C.

Mol Ther. 2017 Oct 4;25(10):2299-2308. doi: 10.1016/j.ymthe.2017.08.005. Epub 2017 Aug 10.

44.

Glecaprevir plus pibrentasvir for chronic hepatitis C virus genotype 1, 2, 4, 5, or 6 infection in adults with compensated cirrhosis (EXPEDITION-1): a single-arm, open-label, multicentre phase 3 trial.

Forns X, Lee SS, Valdes J, Lens S, Ghalib R, Aguilar H, Felizarta F, Hassanein T, Hinrichsen H, Rincon D, Morillas R, Zeuzem S, Horsmans Y, Nelson DR, Yu Y, Krishnan P, Lin CW, Kort JJ, Mensa FJ.

Lancet Infect Dis. 2017 Oct;17(10):1062-1068. doi: 10.1016/S1473-3099(17)30496-6. Epub 2017 Aug 14.

PMID:
28818546
45.

CYP79 P450 monooxygenases in gymnosperms: CYP79A118 is associated with the formation of taxiphyllin in Taxus baccata.

Luck K, Jia Q, Huber M, Handrick V, Wong GK, Nelson DR, Chen F, Gershenzon J, Köllner TG.

Plant Mol Biol. 2017 Sep;95(1-2):169-180. doi: 10.1007/s11103-017-0646-0. Epub 2017 Aug 9. Erratum in: Plant Mol Biol. 2017 Dec;95(6):647.

46.

Public-Private Partnership: Targeting Real-World Data for Hepatitis C Direct-Acting Antivirals.

Mishra P, Florian J, Peter J, Vainorius M, Fried MW, Nelson DR, Birnkrant D.

Gastroenterology. 2017 Sep;153(3):626-631. doi: 10.1053/j.gastro.2017.07.025. Epub 2017 Jul 27. No abstract available.

PMID:
28757271
47.

Spatial gene drives and pushed genetic waves.

Tanaka H, Stone HA, Nelson DR.

Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):8452-8457. doi: 10.1073/pnas.1705868114. Epub 2017 Jul 25.

48.

Characterization of the cytochrome P450 monooxygenase genes (P450ome) from the carotenogenic yeast Xanthophyllomyces dendrorhous.

Córdova P, Gonzalez AM, Nelson DR, Gutiérrez MS, Baeza M, Cifuentes V, Alcaíno J.

BMC Genomics. 2017 Jul 19;18(1):540. doi: 10.1186/s12864-017-3942-9.

49.

Genome-wide identification of 52 cytochrome P450 (CYP) genes in the copepod Tigriopus japonicus and their B[α]P-induced expression patterns.

Han J, Kim DH, Kim HS, Nelson DR, Lee JS.

Comp Biochem Physiol Part D Genomics Proteomics. 2017 Sep;23:49-57. doi: 10.1016/j.cbd.2017.06.002. Epub 2017 Jul 6.

PMID:
28709111
50.

Pulmonary Hemorrhage Treated With Oxidized Regenerated Cellulose.

Sakata KK, Nelson DR, Midthun DE.

J Bronchology Interv Pulmonol. 2017 Jul;24(3):42-44. doi: 10.1097/LBR.0000000000000390. No abstract available.

PMID:
28696975

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