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Items: 1 to 50 of 824

1.

Comprehensive Analyses of Cytochrome P450 Monooxygenases and Secondary Metabolite Biosynthetic Gene Clusters in Cyanobacteria.

Khumalo MJ, Nzuza N, Padayachee T, Chen W, Yu JH, Nelson DR, Syed K.

Int J Mol Sci. 2020 Jan 19;21(2). pii: E656. doi: 10.3390/ijms21020656.

2.

Audience segmentation as a strategy for enhancing the use of research registries for recruiting patients into clinical trials.

Flood-Grady E, Liu J, Paige SR, Lee D, Nelson DR, Shenkman E, Hough D, Krieger JL.

Contemp Clin Trials Commun. 2019 Dec 24;17:100510. doi: 10.1016/j.conctc.2019.100510. eCollection 2020 Mar.

3.

Reply to: "Patient-reported symptoms during direct-acting antiviral treatment: A real-life study in HIV-HCV coinfected patients (ANRS CO13 HEPAVIH)".

Evon DM, Sarkar S, Amador J, Lok AS, Sterling RK, Stewart PW, Reeve BB, Serper M, Reau N, Reddy KR, Di Bisceglie AM, Nelson DR, Golin CE, Lim JK, Fried MW.

J Hepatol. 2019 Dec 27. pii: S0168-8278(19)30702-0. doi: 10.1016/j.jhep.2019.11.015. [Epub ahead of print] No abstract available.

PMID:
31889556
4.

Eigenvalue repulsion and eigenvector localization in sparse non-Hermitian random matrices.

Zhang GH, Nelson DR.

Phys Rev E. 2019 Nov;100(5-1):052315. doi: 10.1103/PhysRevE.100.052315.

PMID:
31870007
5.

Combined artificial high-silicate medium and LED illumination promote carotenoid accumulation in the marine diatom Phaeodactylum tricornutum.

Yi Z, Su Y, Cherek P, Nelson DR, Lin J, Rolfsson O, Wu H, Salehi-Ashtiani K, Brynjolfsson S, Fu W.

Microb Cell Fact. 2019 Dec 2;18(1):209. doi: 10.1186/s12934-019-1263-1.

6.

Genome-wide survey of cytochrome P450 genes in the salmon louse Lepeophtheirus salmonis (Krøyer, 1837).

Humble JL, Carmona-Antoñanzas G, McNair CM, Nelson DR, Bassett DI, Egholm I, Bron JE, Bekaert M, Sturm A.

Parasit Vectors. 2019 Nov 27;12(1):563. doi: 10.1186/s13071-019-3808-x.

7.

Folding pathways to crumpling in thermalized elastic frames.

Yllanes D, Nelson DR, Bowick MJ.

Phys Rev E. 2019 Oct;100(4-1):042112. doi: 10.1103/PhysRevE.100.042112.

PMID:
31770969
8.

Nucleation of antagonistic organisms and cellular competitions on curved, inflating substrates.

Lavrentovich MO, Nelson DR.

Phys Rev E. 2019 Oct;100(4-1):042406. doi: 10.1103/PhysRevE.100.042406.

PMID:
31770966
9.

Remote Activation of a Latent Epitope in an Autoantigen Decoded With Simulated B-Factors.

Pang YP, Casal Moura M, Thompson GE, Nelson DR, Hummel AM, Jenne DE, Emerling D, Volkmuth W, Robinson WH, Specks U.

Front Immunol. 2019 Oct 25;10:2467. doi: 10.3389/fimmu.2019.02467. eCollection 2019.

10.

Medication Non-adherence in a Prospective, Multi-center Cohort Treated with Hepatitis C Direct-Acting Antivirals.

Serper M, Evon DM, Stewart PW, Lok AS, Amador J, Reeve BB, Golin CE, Fried MW, Reddy KR, Sterling RK, Sarkar S, Di Bisceglie AM, Lim JK, Nelson DR, Reau N.

J Gen Intern Med. 2019 Oct 28. doi: 10.1007/s11606-019-05394-9. [Epub ahead of print]

PMID:
31659661
11.

Treatment Status of Hepatocellular Carcinoma Does Not Influence Rates of Sustained Virologic Response: An HCV-TARGET Analysis.

Radhakrishnan K, Di Bisceglie AM, Reddy KR, Lim JK, Levitsky J, Hassan MA, Darling JM, Feld JJ, Akushevich L, Vainorius M, Nelson DR, Fried MW, Brown RS Jr, Terrault NA.

Hepatol Commun. 2019 Aug 7;3(10):1388-1399. doi: 10.1002/hep4.1412. eCollection 2019 Oct.

12.

Periprocedural Major Bleeding Risk of Image-Guided Percutaneous Chest Tube Placement in Patients with an Elevated International Normalized Ratio.

Navin PJ, White ML, Nichols FC, Nelson DR, Mullon JJ, McDonald JS, Atwell TD, Moynagh MR.

J Vasc Interv Radiol. 2019 Nov;30(11):1765-1768. doi: 10.1016/j.jvir.2019.07.002. Epub 2019 Oct 3. Erratum in: J Vasc Interv Radiol. 2020 Jan;31(1):187.

PMID:
31587947
13.

Dysphonia Due to Vocal Cord Injury After Rigid Bronchoscopy: A Case Study With 1-Year Bronchoscopic Follow-up.

Youssef SJ, Orbelo DM, Sakata KK, Zimmermann TM, Pittelko RL, Nelson DR, Midthun DE, Edell ES, Ekbom DC.

J Bronchology Interv Pulmonol. 2019 Oct;26(4):e52-e55. doi: 10.1097/LBR.0000000000000587. No abstract available.

PMID:
31569103
14.

Efficacy of Glecaprevir and Pibrentasvir in Patients With Genotype 1 Hepatitis C Virus Infection With Treatment Failure After NS5A Inhibitor Plus Sofosbuvir Therapy.

Lok AS, Sulkowski MS, Kort JJ, Willner I, Reddy KR, Shiffman ML, Hassan MA, Pearlman BL, Hinestrosa F, Jacobson IM, Morelli G, Peter JA, Vainorius M, Michael LC, Fried MW, Wang GP, Lu W, Larsen L, Nelson DR.

Gastroenterology. 2019 Dec;157(6):1506-1517.e1. doi: 10.1053/j.gastro.2019.08.008. Epub 2019 Aug 8.

PMID:
31401140
15.

A cytochrome P450 monooxygenase gene required for biosynthesis of the trichothecene toxin harzianum A in Trichoderma.

Cardoza RE, McCormick SP, Lindo L, Kim HS, Olivera ER, Nelson DR, Proctor RH, Gutiérrez S.

Appl Microbiol Biotechnol. 2019 Oct;103(19):8087-8103. doi: 10.1007/s00253-019-10047-2. Epub 2019 Aug 5.

PMID:
31384992
16.

Non-Hermitian quasilocalization and ring attractor neural networks.

Tanaka H, Nelson DR.

Phys Rev E. 2019 Jun;99(6-1):062406. doi: 10.1103/PhysRevE.99.062406.

PMID:
31330749
17.

The Safety of Ultrasound-Guided Thoracentesis in Patients on Novel Oral Anticoagulants and Clopidogrel: A Single-Center Experience.

Patel PP, Singh S, Atwell TD, Kashyap R, Kern RM, Mullon JJ, Nelson DR.

Mayo Clin Proc. 2019 Aug;94(8):1535-1541. doi: 10.1016/j.mayocp.2019.01.046. Epub 2019 Jul 11.

PMID:
31303429
18.

Advances in microalgal research and engineering development.

Fu W, Nelson DR, Mystikou A, Daakour S, Salehi-Ashtiani K.

Curr Opin Biotechnol. 2019 Oct;59:157-164. doi: 10.1016/j.copbio.2019.05.013. Epub 2019 Jun 25. Review.

19.

Estimating the distribution of a novel clinical biomarker (FGF-23) in the US population using findings from a regional research registry.

Johnston JA, Nelson DR, Zhang L, Curtis SE, Voelker JR, Wetterau JR.

PLoS One. 2019 Jun 27;14(6):e0218435. doi: 10.1371/journal.pone.0218435. eCollection 2019.

20.

Evolution in range expansions with competition at rough boundaries.

Chu S, Kardar M, Nelson DR, Beller DA.

J Theor Biol. 2019 Oct 7;478:153-160. doi: 10.1016/j.jtbi.2019.06.018. Epub 2019 Jun 18.

PMID:
31220465
21.

Distribution and Diversity of Cytochrome P450 Monooxygenases in the Fungal Class Tremellomycetes.

Akapo OO, Padayachee T, Chen W, Kappo AP, Yu JH, Nelson DR, Syed K.

Int J Mol Sci. 2019 Jun 13;20(12). pii: E2889. doi: 10.3390/ijms20122889.

22.

Assessing the Safety of Direct-Acting Antiviral Agents for Hepatitis C.

McGlynn EA, Adams JL, Kramer J, Sahota AK, Silverberg MJ, Shenkman E, Nelson DR.

JAMA Netw Open. 2019 Jun 5;2(6):e194765. doi: 10.1001/jamanetworkopen.2019.4765.

23.

Is Interferon Therapy for Hepatitis C Infection a Treatable Risk Factor for Parkinson Disease?

Ramirez-Zamora A, Hess CW, Nelson DR.

JAMA Neurol. 2019 Jun 5. doi: 10.1001/jamaneurol.2019.1377. [Epub ahead of print] No abstract available.

PMID:
31168561
24.

On the occurrence of cytochrome P450 in viruses.

Lamb DC, Follmer AH, Goldstone JV, Nelson DR, Warrilow AG, Price CL, True MY, Kelly SL, Poulos TL, Stegeman JJ.

Proc Natl Acad Sci U S A. 2019 Jun 18;116(25):12343-12352. doi: 10.1073/pnas.1901080116. Epub 2019 Jun 5.

25.

Cytochrome P450 Monooxygenase CYP139 Family Involved in the Synthesis of Secondary Metabolites in 824 Mycobacterial Species.

Syed PR, Chen W, Nelson DR, Kappo AP, Yu JH, Karpoormath R, Syed K.

Int J Mol Sci. 2019 May 31;20(11). pii: E2690. doi: 10.3390/ijms20112690.

26.

Bacterial Community Dynamics in an Oyster Hatchery in Response to Probiotic Treatment.

Stevick RJ, Sohn S, Modak TH, Nelson DR, Rowley DC, Tammi K, Smolowitz R, Markey Lundgren K, Post AF, Gómez-Chiarri M.

Front Microbiol. 2019 May 15;10:1060. doi: 10.3389/fmicb.2019.01060. eCollection 2019.

27.

Patient-reported symptoms during and after direct-acting antiviral therapies for chronic hepatitis C: The PROP UP study.

Evon DM, Sarkar S, Amador J, Lok AS, Sterling RK, Stewart PW, Reeve BB, Serper M, Reau N, Rajender Reddy K, Di Bisceglie AM, Nelson DR, Golin CE, Lim JK, Fried MW.

J Hepatol. 2019 Sep;71(3):486-497. doi: 10.1016/j.jhep.2019.04.016. Epub 2019 May 13.

PMID:
31096006
28.

Analysis and preliminary characterisation of the cytochrome P450 monooxygenases from Frankia sp. EuI1c (Frankia inefficax sp.).

Lau ICK, Feyereisen R, Nelson DR, Bell SG.

Arch Biochem Biophys. 2019 Jul 15;669:11-21. doi: 10.1016/j.abb.2019.05.007. Epub 2019 May 10.

PMID:
31082352
29.

A terpene synthase-cytochrome P450 cluster in Dictyostelium discoideum produces a novel trisnorsesquiterpene.

Chen X, Luck K, Rabe P, Dinh CQ, Shaulsky G, Nelson DR, Gershenzon J, Dickschat JS, Köllner TG, Chen F.

Elife. 2019 May 7;8. pii: e44352. doi: 10.7554/eLife.44352.

30.

Barriers to treatment of chronic hepatitis C with direct acting antivirals in an urban clinic.

Malespin M, Harris C, Kanar O, Jackman K, Smotherman C, Johnston A, Ferm J, de Melo SW Jr, Scolapio JS, Nelson DR, Cotler SJ.

Ann Hepatol. 2019 Mar - Apr;18(2):304-309. doi: 10.1016/j.aohep.2018.06.001. Epub 2019 Apr 12.

31.

Efficacy and safety of ombitasvir/paritaprevir/ritonavir and dasabuvir with low-dose ribavirin in patients with chronic hepatitis C virus genotype 1a infection without cirrhosis.

Poordad F, Sedghi S, Pockros PJ, Ravendhran N, Reindollar R, Lucey MR, Epstein M, Bank L, Bernstein D, Trinh R, Krishnan P, Polepally AR, Unnebrink K, Martinez M, Nelson DR.

J Viral Hepat. 2019 Aug;26(8):1027-1030. doi: 10.1111/jvh.13109. Epub 2019 May 6.

32.

Treatment patterns and predictors of costs among patients with migraine: evidence from the United States medical expenditure panel survey.

Ford JH, Ye W, Nichols RM, Foster SA, Nelson DR.

J Med Econ. 2019 Sep;22(9):849-858. doi: 10.1080/13696998.2019.1607358. Epub 2019 May 8.

PMID:
30977712
33.

Hepatitis C virus screening trends: A 2016 update of the National Health Interview Survey.

Kasting ML, Giuliano AR, Reich RR, Roetzheim RG, Duong LM, Thomas E, Nelson DR, Shenkman E, Vadaparampil ST.

Cancer Epidemiol. 2019 Jun;60:112-120. doi: 10.1016/j.canep.2019.03.007. Epub 2019 Apr 3.

PMID:
30953971
34.

Similarities, variations, and evolution of cytochrome P450s in Streptomyces versus Mycobacterium.

Senate LM, Tjatji MP, Pillay K, Chen W, Zondo NM, Syed PR, Mnguni FC, Chiliza ZE, Bamal HD, Karpoormath R, Khoza T, Mashele SS, Blackburn JM, Yu JH, Nelson DR, Syed K.

Sci Rep. 2019 Mar 8;9(1):3962. doi: 10.1038/s41598-019-40646-y.

35.

Comprehensive Comparative Analysis of Cholesterol Catabolic Genes/Proteins in Mycobacterial Species.

van Wyk R, van Wyk M, Mashele SS, Nelson DR, Syed K.

Int J Mol Sci. 2019 Feb 27;20(5). pii: E1032. doi: 10.3390/ijms20051032.

36.

Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials.

Zhang H, He Z, He X, Guo Y, Nelson DR, Modave F, Wu Y, Hogan W, Prosperi M, Bian J.

AMIA Annu Symp Proc. 2018 Dec 5;2018:1601-1610. eCollection 2018.

37.

Nonlinear mechanics of thin frames.

Moshe M, Esposito E, Shankar S, Bircan B, Cohen I, Nelson DR, Bowick MJ.

Phys Rev E. 2019 Jan;99(1-1):013002. doi: 10.1103/PhysRevE.99.013002.

PMID:
30780245
38.

Kirigami Mechanics as Stress Relief by Elastic Charges.

Moshe M, Esposito E, Shankar S, Bircan B, Cohen I, Nelson DR, Bowick MJ.

Phys Rev Lett. 2019 Feb 1;122(4):048001. doi: 10.1103/PhysRevLett.122.048001.

PMID:
30768297
39.

Draft Genome Sequence of the Putative Marine Pathogen Thalassobius sp. I31.1.

Ranson HJ, LaPorte J, Spinard E, Chistoserdov AY, Gomez-Chiarri M, Nelson DR, Rowley DC.

Microbiol Resour Announc. 2019 Feb 7;8(6). pii: e01431-18. doi: 10.1128/MRA.01431-18. eCollection 2019 Feb.

40.

Genomic insights into neonicotinoid sensitivity in the solitary bee Osmia bicornis.

Beadle K, Singh KS, Troczka BJ, Randall E, Zaworra M, Zimmer CT, Hayward A, Reid R, Kor L, Kohler M, Buer B, Nelson DR, Williamson MS, Davies TGE, Field LM, Nauen R, Bass C.

PLoS Genet. 2019 Feb 4;15(2):e1007903. doi: 10.1371/journal.pgen.1007903. eCollection 2019 Feb.

41.

Potential for Heightened Sulfur-Metabolic Capacity in Coastal Subtropical Microalgae.

Nelson DR, Chaiboonchoe A, Fu W, Hazzouri KM, Huang Z, Jaiswal A, Daakour S, Mystikou A, Arnoux M, Sultana M, Salehi-Ashtiani K.

iScience. 2019 Jan 25;11:450-465. doi: 10.1016/j.isci.2018.12.035. Epub 2019 Jan 4.

42.

Fixation probabilities in weakly compressible fluid flows.

Plummer A, Benzi R, Nelson DR, Toschi F.

Proc Natl Acad Sci U S A. 2019 Jan 8;116(2):373-378. doi: 10.1073/pnas.1812829116. Epub 2018 Dec 26.

43.

Comparative Analyses of Cytochrome P450s and Those Associated with Secondary Metabolism in Bacillus Species.

Mthethwa BC, Chen W, Ngwenya ML, Kappo AP, Syed PR, Karpoormath R, Yu JH, Nelson DR, Syed K.

Int J Mol Sci. 2018 Nov 16;19(11). pii: E3623. doi: 10.3390/ijms19113623.

44.

Safranal induces DNA double-strand breakage and ER-stress-mediated cell death in hepatocellular carcinoma cells.

Al-Hrout A, Chaiboonchoe A, Khraiwesh B, Murali C, Baig B, El-Awady R, Tarazi H, Alzahmi A, Nelson DR, Greish YE, Ramadan W, Salehi-Ashtiani K, Amin A.

Sci Rep. 2018 Nov 16;8(1):16951. doi: 10.1038/s41598-018-34855-0.

45.

Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Dec;50(12):1754. doi: 10.1038/s41588-018-0293-7.

PMID:
30425353
46.

Objectively measured pediatric obesity prevalence using the OneFlorida Clinical Research Consortium.

Lemas DJ, Cardel MI, Filipp SL, Hall J, Essner RZ, Smith SR, Nadglowski J, Donahoo WT, Cooper-DeHoff RM, Nelson DR, Hogan WR, Shenkman EA, Gurka MJ, Janicke DM.

Obes Res Clin Pract. 2019 Jan - Feb;13(1):12-15. doi: 10.1016/j.orcp.2018.10.002. Epub 2018 Nov 1.

PMID:
30391132
47.

The Probiotic Bacterium Phaeobacter inhibens Downregulates Virulence Factor Transcription in the Shellfish Pathogen Vibrio coralliilyticus by N-Acyl Homoserine Lactone Production.

Zhao W, Yuan T, Piva C, Spinard EJ, Schuttert CW, Rowley DC, Nelson DR.

Appl Environ Microbiol. 2019 Jan 9;85(2). pii: e01545-18. doi: 10.1128/AEM.01545-18. Print 2019 Jan 15.

48.

Physical interactions reduce the power of natural selection in growing yeast colonies.

Giometto A, Nelson DR, Murray AW.

Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11448-11453. doi: 10.1073/pnas.1809587115. Epub 2018 Oct 23.

49.

Status of Direct-Acting Antiviral Therapy for Hepatitis C Virus Infection and Remaining Challenges.

Baumert TF, Berg T, Lim JK, Nelson DR.

Gastroenterology. 2019 Jan;156(2):431-445. doi: 10.1053/j.gastro.2018.10.024. Epub 2018 Oct 17. Review.

50.

Diversity and evolution of cytochromes P450 in stramenopiles.

Teng L, Fan X, Nelson DR, Han W, Zhang X, Xu D, Renault H, Markov GV, Ye N.

Planta. 2019 Mar;249(3):647-661. doi: 10.1007/s00425-018-3028-1. Epub 2018 Oct 19.

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