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Measurement of Oxidatively Induced DNA Damage in Caenorhabditis elegans with High-Salt DNA Extraction and Isotope-Dilution Mass Spectrometry.

Scanlan LD, Coskun SH, Jaruga P, Hanna SK, Sims CM, Almeida JL, Catoe D, Coskun E, Golan R, Dizdaroglu M, Nelson BC.

Anal Chem. 2019 Oct 1;91(19):12149-12155. doi: 10.1021/acs.analchem.9b01503. Epub 2019 Sep 10.


Bioprosthetic aortic valve leaflet disruption with high energy electrocautery to prevent coronary artery obstruction during valve-in-valve transcatheter aortic valve replacement.

Nelson BC, Chadderdon S, Song H, Zahr FE.

Catheter Cardiovasc Interv. 2019 Jan 1;93(1):164-168. doi: 10.1002/ccd.27721. Epub 2018 Oct 8.


Approaches for the quantitative analysis of oxidation state in cerium oxide nanomaterials.

Sims CM, Maier RA, Johnston-Peck AC, Gorham JM, Hackley VA, Nelson BC.

Nanotechnology. 2019 Feb 22;30(8):085703. doi: 10.1088/1361-6528/aae364. Epub 2018 Sep 21.


Agglomeration of Escherichia coli with Positively Charged Nanoparticles Can Lead to Artifacts in a Standard Caenorhabditis elegans Toxicity Assay.

Hanna SK, Montoro Bustos AR, Peterson AW, Reipa V, Scanlan LD, Hosbas Coskun S, Cho TJ, Johnson ME, Hackley VA, Nelson BC, Winchester MR, Elliott JT, Petersen EJ.

Environ Sci Technol. 2018 May 15;52(10):5968-5978. doi: 10.1021/acs.est.7b06099. Epub 2018 May 2.


Counting Caenorhabditis elegans: Protocol Optimization and Applications for Population Growth and Toxicity Studies in Liquid Medium.

Scanlan LD, Lund SP, Coskun SH, Hanna SK, Johnson ME, Sims CM, Brignoni K, Lapasset P, Petersen EJ, Elliott JT, Nelson BC.

Sci Rep. 2018 Jan 17;8(1):904. doi: 10.1038/s41598-018-19187-3.


Controlled potential electro-oxidation of genomic DNA.

Reipa V, Atha DH, Coskun SH, Sims CM, Nelson BC.

PLoS One. 2018 Jan 11;13(1):e0190907. doi: 10.1371/journal.pone.0190907. eCollection 2018.


Population Pharmacokinetics of Polymyxin B in Acutely Ill Adult Patients.

Miglis C, Rhodes NJ, Avedissian SN, Kubin CJ, Yin MT, Nelson BC, Pai MP, Scheetz MH.

Antimicrob Agents Chemother. 2018 Feb 23;62(3). pii: e01475-17. doi: 10.1128/AAC.01475-17. Print 2018 Mar.


Population Pharmacokinetics of Intravenous Polymyxin B from Clinical Samples.

Kubin CJ, Nelson BC, Miglis C, Scheetz MH, Rhodes NJ, Avedissian SN, Cremers S, Yin MT.

Antimicrob Agents Chemother. 2018 Feb 23;62(3). pii: e01493-17. doi: 10.1128/AAC.01493-17. Print 2018 Mar.


Quantifying engineered nanomaterial toxicity: comparison of common cytotoxicity and gene expression measurements.

Atha DH, Nagy A, Steinbrück A, Dennis AM, Hollingsworth JA, Dua V, Iyer R, Nelson BC.

J Nanobiotechnology. 2017 Nov 9;15(1):79. doi: 10.1186/s12951-017-0312-3.


Redox-active nanomaterials for nanomedicine applications.

Sims CM, Hanna SK, Heller DA, Horoszko CP, Johnson ME, Montoro Bustos AR, Reipa V, Riley KR, Nelson BC.

Nanoscale. 2017 Oct 19;9(40):15226-15251. doi: 10.1039/c7nr05429g. Review.


Reply to Aitken et al., "Should Piperacillin-Tazobactam Be Used as Definitive Therapy against Enterobacteriaceae Harboring Inducible AmpC β-Lactamases?"

Cheng L, Nelson BC, Mehta M, Shi Q, Gomez-Simmonds A, Uhlemann AC.

Antimicrob Agents Chemother. 2017 Aug 24;61(9). pii: e01163-17. doi: 10.1128/AAC.01163-17. Print 2017 Sep. No abstract available.


Multiple Method Analysis of TiO2 Nanoparticle Uptake in Rice (Oryza sativa L.) Plants.

Deng Y, Petersen EJ, Challis KE, Rabb SA, Holbrook RD, Ranville JF, Nelson BC, Xing B.

Environ Sci Technol. 2017 Sep 19;51(18):10615-10623. doi: 10.1021/acs.est.7b01364. Epub 2017 Aug 25.


Exposure to Engineered Nanomaterials: Impact on DNA Repair Pathways.

Singh N, Nelson BC, Scanlan LD, Coskun E, Jaruga P, Doak SH.

Int J Mol Sci. 2017 Jul 13;18(7). pii: E1515. doi: 10.3390/ijms18071515. Review.


Exploring the SDSS Dataset with Linked Scatter Plots: I. EMP, CEMP, and CV Stars.

Carbon DF, Henze C, Nelson BC.

Astrophys J Suppl Ser. 2017 Feb;228(2). pii: 19. doi: 10.3847/1538-4365/228/2/19. Epub 2017 Feb 9.


Impaired mitophagy facilitates mitochondrial damage in Danon disease.

Hashem SI, Murphy AN, Divakaruni AS, Klos ML, Nelson BC, Gault EC, Rowland TJ, Perry CN, Gu Y, Dalton ND, Bradford WH, Devaney EJ, Peterson KL, Jones KL, Taylor MRG, Chen J, Chi NC, Adler ED.

J Mol Cell Cardiol. 2017 Jul;108:86-94. doi: 10.1016/j.yjmcc.2017.05.007. Epub 2017 May 16.


iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.

Panopoulos AD, D'Antonio M, Benaglio P, Williams R, Hashem SI, Schuldt BM, DeBoever C, Arias AD, Garcia M, Nelson BC, Harismendy O, Jakubosky DA, Donovan MKR, Greenwald WW, Farnam K, Cook M, Borja V, Miller CA, Grinstein JD, Drees F, Okubo J, Diffenderfer KE, Hishida Y, Modesto V, Dargitz CT, Feiring R, Zhao C, Aguirre A, McGarry TJ, Matsui H, Li H, Reyna J, Rao F, O'Connor DT, Yeo GW, Evans SM, Chi NC, Jepsen K, Nariai N, Müller FJ, Goldstein LSB, Izpisua Belmonte JC, Adler E, Loring JF, Berggren WT, D'Antonio-Chronowska A, Smith EN, Frazer KA.

Stem Cell Reports. 2017 Apr 11;8(4):1086-1100. doi: 10.1016/j.stemcr.2017.03.012.


Piperacillin-Tazobactam versus Other Antibacterial Agents for Treatment of Bloodstream Infections Due to AmpC β-Lactamase-Producing Enterobacteriaceae.

Cheng L, Nelson BC, Mehta M, Seval N, Park S, Giddins MJ, Shi Q, Whittier S, Gomez-Simmonds A, Uhlemann AC.

Antimicrob Agents Chemother. 2017 May 24;61(6). pii: e00276-17. doi: 10.1128/AAC.00276-17. Print 2017 Jun.


Human-Induced Pluripotent Stem Cell-Based Modeling of Cardiac Storage Disorders.

Nelson BC, Hashem SI, Adler ED.

Curr Cardiol Rep. 2017 Mar;19(3):26. doi: 10.1007/s11886-017-0829-y. Review.


Biophysical characterization of functionalized titania nanoparticles and their application in dental adhesives.

Sun J, Petersen EJ, Watson SS, Sims CM, Kassman A, Frukhtbeyn S, Skrtic D, Ok MT, Jacobs DS, Reipa V, Ye Q, Nelson BC.

Acta Biomater. 2017 Apr 15;53:585-597. doi: 10.1016/j.actbio.2017.01.084. Epub 2017 Feb 2.


Separation, Sizing, and Quantitation of Engineered Nanoparticles in an Organism Model Using Inductively Coupled Plasma Mass Spectrometry and Image Analysis.

Johnson ME, Hanna SK, Montoro Bustos AR, Sims CM, Elliott LC, Lingayat A, Johnston AC, Nikoobakht B, Elliott JT, Holbrook RD, Scott KC, Murphy KE, Petersen EJ, Yu LL, Nelson BC.

ACS Nano. 2017 Jan 24;11(1):526-540. doi: 10.1021/acsnano.6b06582. Epub 2016 Dec 28.


Emerging metrology for high-throughput nanomaterial genotoxicology.

Nelson BC, Wright CW, Ibuki Y, Moreno-Villanueva M, Karlsson HL, Hendriks G, Sims CM, Singh N, Doak SH.

Mutagenesis. 2017 Jan;32(1):215-232. doi: 10.1093/mutage/gew037. Epub 2016 Aug 26. Review.


Antioxidant Cerium Oxide Nanoparticles in Biology and Medicine.

Nelson BC, Johnson ME, Walker ML, Riley KR, Sims CM.

Antioxidants (Basel). 2016 May 17;5(2). pii: E15. doi: 10.3390/antiox5020015. Review.


Production, Purification, and Characterization of ¹⁵N-Labeled DNA Repair Proteins as Internal Standards for Mass Spectrometric Measurements.

Reddy PT, Jaruga P, Nelson BC, Lowenthal MS, Jemth AS, Loseva O, Coskun E, Helleday T, Dizdaroglu M.

Methods Enzymol. 2016;566:305-32. doi: 10.1016/bs.mie.2015.06.044. Epub 2015 Jul 26.


Clinical outcomes associated with polymyxin B dose in patients with bloodstream infections due to carbapenem-resistant Gram-negative rods.

Nelson BC, Eiras DP, Gomez-Simmonds A, Loo AS, Satlin MJ, Jenkins SG, Whittier S, Calfee DP, Furuya EY, Kubin CJ.

Antimicrob Agents Chemother. 2015 Nov;59(11):7000-6. doi: 10.1128/AAC.00844-15. Epub 2015 Aug 31.


DNA damaging potential of photoactivated p25 titanium dioxide nanoparticles.

Petersen EJ, Reipa V, Watson SS, Stanley DL, Rabb SA, Nelson BC.

Chem Res Toxicol. 2014 Oct 20;27(10):1877-84. doi: 10.1021/tx500340v. Epub 2014 Sep 15.


Induced pluripotent stem cells for the study of cardiovascular disease.

Savla JJ, Nelson BC, Perry CN, Adler ED.

J Am Coll Cardiol. 2014 Aug 5;64(5):512-9. doi: 10.1016/j.jacc.2014.05.038. Review.


Acclimation to UV-B radiation and visible light in Lactuca sativa involves up-regulation of photosynthetic performance and orchestration of metabolome-wide responses.

Wargent JJ, Nelson BC, McGhie TK, Barnes PW.

Plant Cell Environ. 2015 May;38(5):929-40. doi: 10.1111/pce.12392. Epub 2014 Jul 22.


Intervertebral disc and stem cells cocultured in biomimetic extracellular matrix stimulated by cyclic compression in perfusion bioreactor.

Tsai TL, Nelson BC, Anderson PA, Zdeblick TA, Li WJ.

Spine J. 2014 Sep 1;14(9):2127-40. doi: 10.1016/j.spinee.2013.11.062. Epub 2014 May 29.


Development of a Standard Reference Material for metabolomics research.

Phinney KW, Ballihaut G, Bedner M, Benford BS, Camara JE, Christopher SJ, Davis WC, Dodder NG, Eppe G, Lang BE, Long SE, Lowenthal MS, McGaw EA, Murphy KE, Nelson BC, Prendergast JL, Reiner JL, Rimmer CA, Sander LC, Schantz MM, Sharpless KE, Sniegoski LT, Tai SS, Thomas JB, Vetter TW, Welch MJ, Wise SA, Wood LJ, Guthrie WF, Hagwood CR, Leigh SD, Yen JH, Zhang NF, Chaudhary-Webb M, Chen H, Fazili Z, LaVoie DJ, McCoy LF, Momin SS, Paladugula N, Pendergrast EC, Pfeiffer CM, Powers CD, Rabinowitz D, Rybak ME, Schleicher RL, Toombs BM, Xu M, Zhang M, Castle AL.

Anal Chem. 2013 Dec 17;85(24):11732-8. doi: 10.1021/ac402689t. Epub 2013 Dec 3.


Functionalization-dependent induction of cellular survival pathways by CdSe quantum dots in primary normal human bronchial epithelial cells.

Nagy A, Hollingsworth JA, Hu B, Steinbrück A, Stark PC, Rios Valdez C, Vuyisich M, Stewart MH, Atha DH, Nelson BC, Iyer R.

ACS Nano. 2013 Oct 22;7(10):8397-411. doi: 10.1021/nn305532k. Epub 2013 Sep 17.


Identification and quantification of DNA repair protein apurinic/apyrimidinic endonuclease 1 (APE1) in human cells by liquid chromatography/isotope-dilution tandem mass spectrometry.

Kirkali G, Jaruga P, Reddy PT, Tona A, Nelson BC, Li M, Wilson DM 3rd, Dizdaroglu M.

PLoS One. 2013 Jul 29;8(7):e69894. doi: 10.1371/journal.pone.0069894. Print 2013.


AIDS-associated Kaposi sarcoma: outcomes after initiation of antiretroviral therapy at a university-affiliated hospital in urban Zimbabwe.

Nelson BC, Borok MZ, Mhlanga TO, Makadzange AT, Campbell TB.

Int J Infect Dis. 2013 Oct;17(10):e902-6. doi: 10.1016/j.ijid.2013.04.011. Epub 2013 Jul 1.


Nanosilver suppresses growth and induces oxidative damage to DNA in Caenorhabditis elegans.

Hunt PR, Marquis BJ, Tyner KM, Conklin S, Olejnik N, Nelson BC, Sprando RL.

J Appl Toxicol. 2013 Oct;33(10):1131-42. doi: 10.1002/jat.2872. Epub 2013 May 2.


Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1.

Arczewska KD, Tomazella GG, Lindvall JM, Kassahun H, Maglioni S, Torgovnick A, Henriksson J, Matilainen O, Marquis BJ, Nelson BC, Jaruga P, Babaie E, Holmberg CI, Bürglin TR, Ventura N, Thiede B, Nilsen H.

Nucleic Acids Res. 2013 May 1;41(10):5368-81. doi: 10.1093/nar/gkt225. Epub 2013 Apr 10.


Manganese-induced oxidative DNA damage in neuronal SH-SY5Y cells: attenuation of thymine base lesions by glutathione and N-acetylcysteine.

Stephenson AP, Schneider JA, Nelson BC, Atha DH, Jain A, Soliman KF, Aschner M, Mazzio E, Renee Reams R.

Toxicol Lett. 2013 Apr 26;218(3):299-307. doi: 10.1016/j.toxlet.2012.12.024. Epub 2013 Jan 4.


Identification and quantification of human DNA repair protein NEIL1 by liquid chromatography/isotope-dilution tandem mass spectrometry.

Reddy PT, Jaruga P, Kirkali G, Tuna G, Nelson BC, Dizdaroglu M.

J Proteome Res. 2013 Feb 1;12(2):1049-61. doi: 10.1021/pr301037t. Epub 2013 Jan 11.


Protective roles of single-wall carbon nanotubes in ultrasonication-induced DNA base damage.

Petersen EJ, Tu X, Dizdaroglu M, Zheng M, Nelson BC.

Small. 2013 Jan 28;9(2):205-8. doi: 10.1002/smll.201201217. Epub 2012 Sep 18.


Pro-oxidant induced DNA damage in human lymphoblastoid cells: homeostatic mechanisms of genotoxic tolerance.

Seager AL, Shah UK, Mikhail JM, Nelson BC, Marquis BJ, Doak SH, Johnson GE, Griffiths SM, Carmichael PL, Scott SJ, Scott AD, Jenkins GJ.

Toxicol Sci. 2012 Aug;128(2):387-97. doi: 10.1093/toxsci/kfs152. Epub 2012 Apr 26.


Copper oxide nanoparticle mediated DNA damage in terrestrial plant models.

Atha DH, Wang H, Petersen EJ, Cleveland D, Holbrook RD, Jaruga P, Dizdaroglu M, Xing B, Nelson BC.

Environ Sci Technol. 2012 Feb 7;46(3):1819-27. doi: 10.1021/es202660k. Epub 2012 Jan 20. Erratum in: Environ Sci Technol. 2014 Oct 21;48(20):12473.


NIST gold nanoparticle reference materials do not induce oxidative DNA damage.

Nelson BC, Petersen EJ, Marquis BJ, Atha DH, Elliott JT, Cleveland D, Watson SS, Tseng IH, Dillon A, Theodore M, Jackman J.

Nanotoxicology. 2013 Feb;7(1):21-9. doi: 10.3109/17435390.2011.626537. Epub 2011 Nov 2.


The role of iron redox state in the genotoxicity of ultrafine superparamagnetic iron oxide nanoparticles.

Singh N, Jenkins GJ, Nelson BC, Marquis BJ, Maffeis TG, Brown AP, Williams PM, Wright CJ, Doak SH.

Biomaterials. 2012 Jan;33(1):163-70. doi: 10.1016/j.biomaterials.2011.09.087. Epub 2011 Oct 24.


Stable isotope-labeling of DNA repair proteins, and their purification and characterization.

Reddy PT, Jaruga P, Nelson BC, Lowenthal M, Dizdaroglu M.

Protein Expr Purif. 2011 Jul;78(1):94-101. doi: 10.1016/j.pep.2011.02.011. Epub 2011 Feb 26.


Certification of vitamins and carotenoids in SRM 3280 multivitamin/multielement tablets.

Sander LC, Sharpless KE, Wise SA, Nelson BC, Phinney KW, Porter BJ, Rimmer CA, Thomas JB, Wood LJ, Yen JH, Duewer DL, Atkinson R, Chen P, Goldschmidt R, Wolf WR, Ho IP, Betz JM.

Anal Chem. 2011 Jan 1;83(1):99-108. doi: 10.1021/ac101953u. Epub 2010 Dec 3.


Preparation and characterization of standard reference material 1849 infant/adult nutritional formula.

Sharpless KE, Lindstrom RM, Nelson BC, Phinney KW, Rimmer CA, Sander LC, Schantz MM, Spatz RO, Thomas JB, Turk GC, Wise SA, Wood LJ, Yen JH.

J AOAC Int. 2010 Jul-Aug;93(4):1262-74.


Mechanisms and measurements of nanomaterial-induced oxidative damage to DNA.

Petersen EJ, Nelson BC.

Anal Bioanal Chem. 2010 Sep;398(2):613-50. doi: 10.1007/s00216-010-3881-7. Epub 2010 Jun 22. Review.


Rejection elicits emotional reactions but neither causes immediate distress nor lowers self-esteem: a meta-analytic review of 192 studies on social exclusion.

Blackhart GC, Nelson BC, Knowles ML, Baumeister RF.

Pers Soc Psychol Rev. 2009 Nov;13(4):269-309. doi: 10.1177/1088868309346065. Epub 2009 Sep 21. Review. Erratum in: Pers Soc Psychol Rev. 2010 May;14(2):259.


Measurement of (5'R)- and (5'S)-8,5'-cyclo-2'-deoxyadenosines in DNA in vivo by liquid chromatography/isotope-dilution tandem mass spectrometry.

Jaruga P, Xiao Y, Nelson BC, Dizdaroglu M.

Biochem Biophys Res Commun. 2009 Sep 4;386(4):656-60. doi: 10.1016/j.bbrc.2009.06.107. Epub 2009 Jun 23.


A comparative biochemical and structural analysis of the intracellular chorismate mutase (Rv0948c) from Mycobacterium tuberculosis H(37)R(v) and the secreted chorismate mutase (y2828) from Yersinia pestis.

Kim SK, Reddy SK, Nelson BC, Robinson H, Reddy PT, Ladner JE.

FEBS J. 2008 Oct;275(19):4824-35. doi: 10.1111/j.1742-4658.2008.06621.x. Epub 2008 Aug 22.


Commutability of NIST SRM 1955 Homocysteine and Folate in Frozen Human Serum with selected total homocysteine immunoassays and enzymatic assays.

Nelson BC, Pfeiffer CM, Zhang M, Duewer DL, Sharpless KE, Lippa KA.

Clin Chim Acta. 2008 Sep;395(1-2):99-105. doi: 10.1016/j.cca.2008.05.016. Epub 2008 May 29.


Certification of standard reference materials containing bitter orange.

Sander LC, Putzbach K, Nelson BC, Rimmer CA, Bedner M, Thomas JB, Porter BJ, Wood LJ, Schantz MM, Murphy KE, Sharpless KE, Wise SA, Yen JH, Siitonen PH, Evans RL, Nguyen Pho A, Roman MC, Betz JM.

Anal Bioanal Chem. 2008 Jul;391(6):2023-34. doi: 10.1007/s00216-008-2074-0. Epub 2008 Apr 20.


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