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Items: 1 to 50 of 59

1.

Enabling microbial syringol conversion through structure-guided protein engineering.

Machovina MM, Mallinson SJB, Knott BC, Meyers AW, Garcia-Borràs M, Bu L, Gado JE, Oliver A, Schmidt GP, Hinchen DJ, Crowley MF, Johnson CW, Neidle EL, Payne CM, Houk KN, Beckham GT, McGeehan JE, DuBois JL.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):13970-13976. doi: 10.1073/pnas.1820001116. Epub 2019 Jun 24.

2.

Engineering CatM, a LysR-Type Transcriptional Regulator, to Respond Synergistically to Two Effectors.

Tumen-Velasquez MP, Laniohan NS, Momany C, Neidle EL.

Genes (Basel). 2019 May 31;10(6). pii: E421. doi: 10.3390/genes10060421.

3.

Removal of aromatic inhibitors produced from lignocellulosic hydrolysates by Acinetobacter baylyi ADP1 with formation of ethanol by Kluyveromyces marxianus.

Singh A, Bedore SR, Sharma NK, Lee SA, Eiteman MA, Neidle EL.

Biotechnol Biofuels. 2019 Apr 23;12:91. doi: 10.1186/s13068-019-1434-7. eCollection 2019.

4.

A promiscuous cytochrome P450 aromatic O-demethylase for lignin bioconversion.

Mallinson SJB, Machovina MM, Silveira RL, Garcia-Borràs M, Gallup N, Johnson CW, Allen MD, Skaf MS, Crowley MF, Neidle EL, Houk KN, Beckham GT, DuBois JL, McGeehan JE.

Nat Commun. 2018 Jun 27;9(1):2487. doi: 10.1038/s41467-018-04878-2.

5.

Accelerating pathway evolution by increasing the gene dosage of chromosomal segments.

Tumen-Velasquez M, Johnson CW, Ahmed A, Dominick G, Fulk EM, Khanna P, Lee SA, Schmidt AL, Linger JG, Eiteman MA, Beckham GT, Neidle EL.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):7105-7110. doi: 10.1073/pnas.1803745115. Epub 2018 Jun 18.

6.

Vibrio fischeri DarR Directs Responses to d-Aspartate and Represents a Group of Similar LysR-Type Transcriptional Regulators.

Jones RM Jr, Popham DL, Schmidt AL, Neidle EL, Stabb EV.

J Bacteriol. 2018 Jul 10;200(15). pii: e00773-17. doi: 10.1128/JB.00773-17. Print 2018 Aug 1.

7.

Malonate degradation in Acinetobacter baylyi ADP1: operon organization and regulation by MdcR.

Stoudenmire JL, Schmidt AL, Tumen-Velasquez MP, Elliott KT, Laniohan NS, Walker Whitley S, Galloway NR, Nune M, West M, Momany C, Neidle EL, Karls AC.

Microbiology. 2017 May 25. doi: 10.1099/mic.0.000462. [Epub ahead of print]

PMID:
28537542
8.

Novel heterologous bacterial system reveals enhanced susceptibility to DNA damage mediated by yqgF, a nearly ubiquitous and often essential gene.

McClung DJ, Calixto A, Mosera MN, Kumar R, Neidle EL, Elliott KT.

Microbiology. 2016 Oct;162(10):1808-1821. doi: 10.1099/mic.0.000355. Epub 2016 Aug 15.

PMID:
27527105
9.

The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators.

Alanazi AM, Neidle EL, Momany C.

Acta Crystallogr D Biol Crystallogr. 2013 Oct;69(Pt 10):1995-2007. doi: 10.1107/S0907444913017320. Epub 2013 Sep 20.

PMID:
24100318
10.

Copy number change: evolving views on gene amplification.

Elliott KT, Cuff LE, Neidle EL.

Future Microbiol. 2013 Jul;8(7):887-99. doi: 10.2217/fmb.13.53. Review.

11.

Analysis of IS1236-mediated gene amplification events in Acinetobacter baylyi ADP1.

Cuff LE, Elliott KT, Seaton SC, Ishaq MK, Laniohan NS, Karls AC, Neidle EL.

J Bacteriol. 2012 Aug;194(16):4395-405. doi: 10.1128/JB.00783-12. Epub 2012 Jun 15.

12.

Defying stereotypes: the elusive search for a universal model of LysR-type regulation.

Momany C, Neidle EL.

Mol Microbiol. 2012 Feb;83(3):453-6. doi: 10.1111/j.1365-2958.2011.07960.x. Epub 2012 Jan 11.

13.

Genome-wide selection for increased copy number in Acinetobacter baylyi ADP1: locus and context-dependent variation in gene amplification.

Seaton SC, Elliott KT, Cuff LE, Laniohan NS, Patel PR, Neidle EL.

Mol Microbiol. 2012 Feb;83(3):520-35. doi: 10.1111/j.1365-2958.2011.07945.x. Epub 2011 Dec 29.

14.

Acinetobacter baylyi ADP1: transforming the choice of model organism.

Elliott KT, Neidle EL.

IUBMB Life. 2011 Dec;63(12):1075-80. doi: 10.1002/iub.530. Epub 2011 Oct 27. Review.

15.

Discovery of a gene involved in a third bacterial protoporphyrinogen oxidase activity through comparative genomic analysis and functional complementation.

Boynton TO, Gerdes S, Craven SH, Neidle EL, Phillips JD, Dailey HA.

Appl Environ Microbiol. 2011 Jul;77(14):4795-801. doi: 10.1128/AEM.00171-11. Epub 2011 Jun 3.

16.

Full-length structures of BenM and two variants reveal different oligomerization schemes for LysR-type transcriptional regulators.

Ruangprasert A, Craven SH, Neidle EL, Momany C.

J Mol Biol. 2010 Dec 10;404(4):568-86. doi: 10.1016/j.jmb.2010.09.053. Epub 2010 Oct 7.

PMID:
20932977
17.

Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1.

Craven SH, Ezezika OC, Haddad S, Hall RA, Momany C, Neidle EL.

Mol Microbiol. 2009 May;72(4):881-94. doi: 10.1111/j.1365-2958.2009.06686.x. Epub 2009 Apr 8.

18.

Double trouble: medical implications of genetic duplication and amplification in bacteria.

Craven SH, Neidle EL.

Future Microbiol. 2007 Jun;2(3):309-21. Review.

PMID:
17661705
19.

Oligomerization of BenM, a LysR-type transcriptional regulator: structural basis for the aggregation of proteins in this family.

Ezezika OC, Haddad S, Neidle EL, Momany C.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1;63(Pt 5):361-8. Epub 2007 Apr 28.

20.

Distinct effector-binding sites enable synergistic transcriptional activation by BenM, a LysR-type regulator.

Ezezika OC, Haddad S, Clark TJ, Neidle EL, Momany C.

J Mol Biol. 2007 Mar 30;367(3):616-29. Epub 2006 Oct 4.

PMID:
17291527
21.

CatM regulation of the benABCDE operon: functional divergence of two LysR-type paralogs in Acinetobacter baylyi ADP1.

Ezezika OC, Collier-Hyams LS, Dale HA, Burk AC, Neidle EL.

Appl Environ Microbiol. 2006 Mar;72(3):1749-58.

22.

Selection for gene clustering by tandem duplication.

Reams AB, Neidle EL.

Annu Rev Microbiol. 2004;58:119-42. Review.

PMID:
15487932
24.

Diverse organization of genes of the beta-ketoadipate pathway in members of the marine Roseobacter lineage.

Buchan A, Neidle EL, Moran MA.

Appl Environ Microbiol. 2004 Mar;70(3):1658-68.

25.
26.

Histidine ligand protonation and redox potential in the rieske dioxygenases: role of a conserved aspartate in anthranilate 1,2-dioxygenase.

Beharry ZM, Eby DM, Coulter ED, Viswanathan R, Neidle EL, Phillips RS, Kurtz DM Jr.

Biochemistry. 2003 Nov 25;42(46):13625-36.

PMID:
14622009
29.

Redox-dependent structural changes in archaeal and bacterial Rieske-type [2Fe-2S] clusters.

Cosper NJ, Eby DM, Kounosu A, Kurosawa N, Neidle EL, Kurtz DM Jr, Iwasaki T, Scott RA.

Protein Sci. 2002 Dec;11(12):2969-73.

30.

X-ray crystal structure of benzoate 1,2-dioxygenase reductase from Acinetobacter sp. strain ADP1.

Karlsson A, Beharry ZM, Matthew Eby D, Coulter ED, Neidle EL, Kurtz DM Jr, Eklund H, Ramaswamy S.

J Mol Biol. 2002 Apr 26;318(2):261-72.

PMID:
12051836
31.

Synergistic transcriptional activation by one regulatory protein in response to two metabolites.

Bundy BM, Collier LS, Hoover TR, Neidle EL.

Proc Natl Acad Sci U S A. 2002 May 28;99(11):7693-8.

32.
33.

Diversity of the ring-cleaving dioxygenase gene pcaH in a salt marsh bacterial community.

Buchan A, Neidle EL, Moran MA.

Appl Environ Microbiol. 2001 Dec;67(12):5801-9.

34.

Cloning and expression of the benzoate dioxygenase genes from Rhodococcus sp. strain 19070.

Haddad S, Eby DM, Neidle EL.

Appl Environ Microbiol. 2001 Jun;67(6):2507-14.

35.

Characterization and evolution of anthranilate 1,2-dioxygenase from Acinetobacter sp. strain ADP1.

Eby DM, Beharry ZM, Coulter ED, Kurtz DM Jr, Neidle EL.

J Bacteriol. 2001 Jan;183(1):109-18.

37.

Key aromatic-ring-cleaving enzyme, protocatechuate 3,4-dioxygenase, in the ecologically important marine Roseobacter lineage.

Buchan A, Collier LS, Neidle EL, Moran MA.

Appl Environ Microbiol. 2000 Nov;66(11):4662-72.

38.

areABC genes determine the catabolism of aryl esters in Acinetobacter sp. Strain ADP1.

Jones RM, Collier LS, Neidle EL, Williams PA.

J Bacteriol. 1999 Aug;181(15):4568-75.

40.
41.
42.
44.

catM encodes a LysR-type transcriptional activator regulating catechol degradation in Acinetobacter calcoaceticus.

Romero-Arroyo CE, Schell MA, Gaines GL 3rd, Neidle EL.

J Bacteriol. 1995 Oct;177(20):5891-8.

45.

5-Aminolevulinic acid availability and control of spectral complex formation in hemA and hemT mutants of Rhodobacter sphaeroides.

Neidle EL, Kaplan S.

J Bacteriol. 1993 Apr;175(8):2304-13. Erratum in: J Bacteriol 1993 Nov;175(21):7123.

48.

Functional and evolutionary relationships among diverse oxygenases.

Harayama S, Kok M, Neidle EL.

Annu Rev Microbiol. 1992;46:565-601. Review.

PMID:
1444267
50.

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