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Items: 49

1.

Partner-specific induction of Spodoptera frugiperda immune genes in response to the entomopathogenic nematobacterial complex Steinernema carpocapsae-Xenorhabdus nematophila.

Huot L, Bigourdan A, Pagès S, Ogier JC, Girard PA, Nègre N, Duvic B.

Dev Comp Immunol. 2020 Mar 14;108:103676. doi: 10.1016/j.dci.2020.103676. [Epub ahead of print]

PMID:
32184079
2.

Genetic characterization of Carnivore Parvoviruses in Spanish wildlife reveals domestic dog and cat-related sequences.

Calatayud O, Esperón F, Velarde R, Oleaga Á, Llaneza L, Ribas A, Negre N, de la Torre A, Rodríguez A, Millán J.

Transbound Emerg Dis. 2020 Mar;67(2):626-634. doi: 10.1111/tbed.13378. Epub 2019 Oct 22.

PMID:
31581349
3.

Interaction of a Densovirus with Glycans of the Peritrophic Matrix Mediates Oral Infection of the Lepidopteran Pest Spodoptera frugiperda.

Pigeyre L, Schatz M, Ravallec M, Gasmi L, Nègre N, Clouet C, Seveno M, El Koulali K, Decourcelle M, Guerardel Y, Cot D, Dupressoir T, Gosselin-Grenet AS, Ogliastro M.

Viruses. 2019 Sep 17;11(9). pii: E870. doi: 10.3390/v11090870.

4.

Spodoptera frugiperda transcriptional response to infestation by Steinernema carpocapsae.

Huot L, George S, Girard PA, Severac D, Nègre N, Duvic B.

Sci Rep. 2019 Sep 9;9(1):12879. doi: 10.1038/s41598-019-49410-8.

5.

Angiostrongylus cantonensis in North African hedgehogs as vertebrate hosts, Mallorca, Spain, October 2018.

Paredes-Esquivel C, Sola J, Delgado-Serra S, Puig Riera M, Negre N, Miranda MÁ, Jurado-Rivera JA.

Euro Surveill. 2019 Aug;24(33). doi: 10.2807/1560-7917.ES.2019.24.33.1900489.

6.

Combined morphology and DNA-barcoding to identify Plagiorhynchus cylindraceus cystacanths in Atelerix algirus.

Garcia-Salguero A, Delgado-Serra S, Sola J, Negre N, Miranda MA, Paredes-Esquivel C.

Parasitol Res. 2019 May;118(5):1473-1478. doi: 10.1007/s00436-019-06299-6. Epub 2019 Mar 30.

PMID:
30927061
7.

Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda.

Moné Y, Nhim S, Gimenez S, Legeai F, Seninet I, Parrinello H, Nègre N, d'Alençon E.

BMC Genomics. 2018 Nov 6;19(1):804. doi: 10.1186/s12864-018-5119-6.

8.

High diversity of hemotropic mycoplasmas in Iberian wild carnivores.

Millán J, Velarde R, Delicado V, Negre N, Ribas A, Oleaga Á, Llaneza L, Esperón F.

Comp Immunol Microbiol Infect Dis. 2018 Oct;60:11-16. doi: 10.1016/j.cimid.2018.09.007. Epub 2018 Sep 27.

PMID:
30396424
9.

Control of nerve cord formation by Engrailed and Gooseberry-Neuro: A multi-step, coordinated process.

Bonneaud N, Layalle S, Colomb S, Jourdan C, Ghysen A, Severac D, Dantec C, Nègre N, Maschat F.

Dev Biol. 2017 Dec 15;432(2):273-285. doi: 10.1016/j.ydbio.2017.10.018. Epub 2017 Oct 31.

10.

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.

Gouin A, Bretaudeau A, Nam K, Gimenez S, Aury JM, Duvic B, Hilliou F, Durand N, Montagné N, Darboux I, Kuwar S, Chertemps T, Siaussat D, Bretschneider A, Moné Y, Ahn SJ, Hänniger S, Grenet AG, Neunemann D, Maumus F, Luyten I, Labadie K, Xu W, Koutroumpa F, Escoubas JM, Llopis A, Maïbèche-Coisne M, Salasc F, Tomar A, Anderson AR, Khan SA, Dumas P, Orsucci M, Guy J, Belser C, Alberti A, Noel B, Couloux A, Mercier J, Nidelet S, Dubois E, Liu NY, Boulogne I, Mirabeau O, Le Goff G, Gordon K, Oakeshott J, Consoli FL, Volkoff AN, Fescemyer HW, Marden JH, Luthe DS, Herrero S, Heckel DG, Wincker P, Kergoat GJ, Amselem J, Quesneville H, Groot AT, Jacquin-Joly E, Nègre N, Lemaitre C, Legeai F, d'Alençon E, Fournier P.

Sci Rep. 2017 Sep 25;7(1):11816. doi: 10.1038/s41598-017-10461-4.

11.

Integration of temporal and spatial patterning generates neural diversity.

Erclik T, Li X, Courgeon M, Bertet C, Chen Z, Baumert R, Ng J, Koo C, Arain U, Behnia R, del Valle Rodriguez A, Senderowicz L, Negre N, White KP, Desplan C.

Nature. 2017 Jan 19;541(7637):365-370. doi: 10.1038/nature20794. Epub 2017 Jan 11.

12.

Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome.

Vogelmann J, Le Gall A, Dejardin S, Allemand F, Gamot A, Labesse G, Cuvier O, Nègre N, Cohen-Gonsaud M, Margeat E, Nöllmann M.

PLoS Genet. 2014 Aug 28;10(8):e1004544. doi: 10.1371/journal.pgen.1004544. eCollection 2014 Aug.

13.

Establishment and analysis of a reference transcriptome for Spodoptera frugiperda.

Legeai F, Gimenez S, Duvic B, Escoubas JM, Gosselin Grenet AS, Blanc F, Cousserans F, Séninet I, Bretaudeau A, Mutuel D, Girard PA, Monsempes C, Magdelenat G, Hilliou F, Feyereisen R, Ogliastro M, Volkoff AN, Jacquin-Joly E, d'Alençon E, Nègre N, Fournier P.

BMC Genomics. 2014 Aug 23;15:704. doi: 10.1186/1471-2164-15-704.

14.

Genomic data integration for ecological and evolutionary traits in non-model organisms.

Tagu D, Colbourne JK, Nègre N.

BMC Genomics. 2014 Jul 17;15:490. doi: 10.1186/1471-2164-15-490.

15.

Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster.

Slattery M, Ma L, Spokony RF, Arthur RK, Kheradpour P, Kundaje A, Nègre N, Crofts A, Ptashkin R, Zieba J, Ostapenko A, Suchy S, Victorsen A, Jameel N, Grundstad AJ, Gao W, Moran JR, Rehm EJ, Grossman RL, Kellis M, White KP.

Genome Res. 2014 Jul;24(7):1224-35. doi: 10.1101/gr.168807.113.

16.

Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification.

Arthur RK, Ma L, Slattery M, Spokony RF, Ostapenko A, Nègre N, White KP.

Genome Res. 2014 Jul;24(7):1115-24. doi: 10.1101/gr.162008.113.

17.

Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning.

Slattery M, Voutev R, Ma L, Nègre N, White KP, Mann RS.

PLoS Genet. 2013;9(9):e1003753. doi: 10.1371/journal.pgen.1003753. Epub 2013 Sep 5.

18.

Evidence for autoregulation and cell signaling pathway regulation from genome-wide binding of the Drosophila retinoblastoma protein.

Acharya P, Negre N, Johnston J, Wei Y, White KP, Henry RW, Arnosti DN.

G3 (Bethesda). 2012 Nov;2(11):1459-72. doi: 10.1534/g3.112.004424. Epub 2012 Nov 1.

19.

The relationship between long-range chromatin occupancy and polymerization of the Drosophila ETS family transcriptional repressor Yan.

Webber JL, Zhang J, Cote L, Vivekanand P, Ni X, Zhou J, Nègre N, Carthew RW, White KP, Rebay I.

Genetics. 2013 Feb;193(2):633-49. doi: 10.1534/genetics.112.146647. Epub 2012 Nov 19.

20.

Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome.

Ni X, Zhang YE, Nègre N, Chen S, Long M, White KP.

PLoS Biol. 2012;10(11):e1001420. doi: 10.1371/journal.pbio.1001420. Epub 2012 Nov 6.

21.

Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster.

Slattery M, Nègre N, White KP.

Brief Funct Genomics. 2012 Sep;11(5):336-46. doi: 10.1093/bfgp/els034.

22.

Ultrabithorax confers spatial identity in a context-specific manner in the Drosophila postembryonic ventral nervous system.

Marin EC, Dry KE, Alaimo DR, Rudd KT, Cillo AR, Clenshaw ME, Negre N, White KP, Truman JW.

Neural Dev. 2012 Sep 11;7:31. doi: 10.1186/1749-8104-7-31.

23.

Control of mitochondrial structure and function by the Yorkie/YAP oncogenic pathway.

Nagaraj R, Gururaja-Rao S, Jones KT, Slattery M, Negre N, Braas D, Christofk H, White KP, Mann R, Banerjee U.

Genes Dev. 2012 Sep 15;26(18):2027-37. doi: 10.1101/gad.183061.111. Epub 2012 Aug 27.

24.

Sin3a acts through a multi-gene module to regulate invasion in Drosophila and human tumors.

Das TK, Sangodkar J, Negre N, Narla G, Cagan RL.

Oncogene. 2013 Jun 27;32(26):3184-97. doi: 10.1038/onc.2012.326. Epub 2012 Aug 13.

25.

Systematic evaluation of factors influencing ChIP-seq fidelity.

Chen Y, Negre N, Li Q, Mieczkowska JO, Slattery M, Liu T, Zhang Y, Kim TK, He HH, Zieba J, Ruan Y, Bickel PJ, Myers RM, Wold BJ, White KP, Lieb JD, Liu XS.

Nat Methods. 2012 Jun;9(6):609-14. doi: 10.1038/nmeth.1985. Epub 2012 Apr 22.

26.

The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression.

Ament SA, Wang Y, Chen CC, Blatti CA, Hong F, Liang ZS, Negre N, White KP, Rodriguez-Zas SL, Mizzen CA, Sinha S, Zhong S, Robinson GE.

PLoS Genet. 2012;8(3):e1002596. doi: 10.1371/journal.pgen.1002596. Epub 2012 Mar 29.

27.

Evidence of abundant stop codon readthrough in Drosophila and other metazoa.

Jungreis I, Lin MF, Spokony R, Chan CS, Negre N, Victorsen A, White KP, Kellis M.

Genome Res. 2011 Dec;21(12):2096-113. doi: 10.1101/gr.119974.110. Epub 2011 Oct 12.

28.

Insensitive is a corepressor for Suppressor of Hairless and regulates Notch signalling during neural development.

Duan H, Dai Q, Kavaler J, Bejarano F, Medranda G, Nègre N, Lai EC.

EMBO J. 2011 Jul 15;30(15):3120-33. doi: 10.1038/emboj.2011.218.

29.

An investigation into alternative reservoirs of canine leishmaniasis on the endemic island of Mallorca (Spain).

Millán J, Zanet S, Gomis M, Trisciuoglio A, Negre N, Ferroglio E.

Transbound Emerg Dis. 2011 Aug;58(4):352-7. doi: 10.1111/j.1865-1682.2011.01212.x. Epub 2011 Mar 9.

PMID:
21733133
30.

Characterization of a CENP-B homolog in the holocentric Lepidoptera Spodoptera frugiperda.

d'Alençon E, Nègre N, Stanojcic S, Alassoeur B, Gimenez S, Léger A, Abd-Alla A, Juliant S, Fournier P.

Gene. 2011 Oct 10;485(2):91-101. doi: 10.1016/j.gene.2011.06.007. Epub 2011 Jun 25.

PMID:
21712078
31.

Determinants of antigenicity and specificity in immune response for protein sequences.

Wang Y, Wu W, Negre NN, White KP, Li C, Shah PK.

BMC Bioinformatics. 2011 Jun 21;12:251. doi: 10.1186/1471-2105-12-251.

32.

Parallel on-chip gene synthesis and application to optimization of protein expression.

Quan J, Saaem I, Tang N, Ma S, Negre N, Gong H, White KP, Tian J.

Nat Biotechnol. 2011 May;29(5):449-52. doi: 10.1038/nbt.1847. Epub 2011 Apr 24.

PMID:
21516083
33.

Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila.

Slattery M, Ma L, Négre N, White KP, Mann RS.

PLoS One. 2011 Apr 5;6(4):e14686. doi: 10.1371/journal.pone.0014686.

34.

A cis-regulatory map of the Drosophila genome.

Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, Cheng C, Auburn RP, Davis MB, Domanus M, Shah PK, Morrison CA, Zieba J, Suchy S, Senderowicz L, Victorsen A, Bild NA, Grundstad AJ, Hanley D, MacAlpine DM, Mannervik M, Venken K, Bellen H, White R, Gerstein M, Russell S, Grossman RL, Ren B, Posakony JW, Kellis M, White KP.

Nature. 2011 Mar 24;471(7339):527-31. doi: 10.1038/nature09990.

35.

Finding Downstream Target DNAs for Chromatin Proteins by X-CHIP in Drosophila.

Nègre N, Cavalli G.

Mapping Protein/DNA Interactions by Cross-Linking [Internet]. Paris: Institut national de la santé et de la recherche médicale; 2001.

36.

ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.

Ho JW, Bishop E, Karchenko PV, Nègre N, White KP, Park PJ.

BMC Genomics. 2011 Feb 28;12:134. doi: 10.1186/1471-2164-12-134.

37.

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M.

Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22.

38.

Avian mycobacteriosis in free-living raptors in Majorca Island, Spain.

Millán J, Negre N, Castellanos E, de Juan L, Mateos A, Parpal L, Aranaz A.

Avian Pathol. 2010 Feb;39(1):1-6. doi: 10.1080/03079450903389945.

PMID:
20390529
39.

The young, the weak and the sick: evidence of natural selection by predation.

Genovart M, Negre N, Tavecchia G, Bistuer A, Parpal L, Oro D.

PLoS One. 2010 Mar 19;5(3):e9774. doi: 10.1371/journal.pone.0009774.

40.

A comprehensive map of insulator elements for the Drosophila genome.

Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP.

PLoS Genet. 2010 Jan 15;6(1):e1000814. doi: 10.1371/journal.pgen.1000814.

41.

Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks.

Tian F, Shah PK, Liu X, Negre N, Chen J, Karpenko O, White KP, Grossman RL.

Bioinformatics. 2009 Nov 15;25(22):3001-4. doi: 10.1093/bioinformatics/btp469. Epub 2009 Aug 5.

42.

Analysis of Drosophila segmentation network identifies a JNK pathway factor overexpressed in kidney cancer.

Liu J, Ghanim M, Xue L, Brown CD, Iossifov I, Angeletti C, Hua S, Nègre N, Ludwig M, Stricker T, Al-Ahmadie HA, Tretiakova M, Camp RL, Perera-Alberto M, Rimm DL, Xu T, Rzhetsky A, White KP.

Science. 2009 Feb 27;323(5918):1218-22. doi: 10.1126/science.1157669. Epub 2009 Jan 22.

43.

[Polycomb controls the cell fate].

Nègre N, Cavalli G.

Med Sci (Paris). 2006 Dec;22(12):1033-5. French. No abstract available.

44.

Mapping the distribution of chromatin proteins by ChIP on chip.

Nègre N, Lavrov S, Hennetin J, Bellis M, Cavalli G.

Methods Enzymol. 2006;410:316-41. Review.

PMID:
16938558
45.

PRE-mediated bypass of two Su(Hw) insulators targets PcG proteins to a downstream promoter.

Comet I, Savitskaya E, Schuettengruber B, Nègre N, Lavrov S, Parshikov A, Juge F, Gracheva E, Georgiev P, Cavalli G.

Dev Cell. 2006 Jul;11(1):117-24.

46.

From genetics to epigenetics: the tale of Polycomb group and trithorax group genes.

Grimaud C, Nègre N, Cavalli G.

Chromosome Res. 2006;14(4):363-75. Review. Erratum in: Chromosome Res. 2006;14(6):701.

PMID:
16821133
47.

Chromosomal distribution of PcG proteins during Drosophila development.

Nègre N, Hennetin J, Sun LV, Lavrov S, Bellis M, White KP, Cavalli G.

PLoS Biol. 2006 Jun;4(6):e170. Epub 2006 Apr 20.

48.

Protein-DNA interaction mapping using genomic tiling path microarrays in Drosophila.

Sun LV, Chen L, Greil F, Negre N, Li TR, Cavalli G, Zhao H, Van Steensel B, White KP.

Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9428-33. Epub 2003 Jul 22.

49.

Mitotic G2-arrest is required for neural cell fate determination in Drosophila.

Nègre N, Ghysen A, Martinez AM.

Mech Dev. 2003 Feb;120(2):253-65.

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