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Items: 1 to 50 of 346

1.

FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences.

Quan J, Langelier C, Kuchta A, Batson J, Teyssier N, Lyden A, Caldera S, McGeever A, Dimitrov B, King R, Wilheim J, Murphy M, Ares LP, Travisano KA, Sit R, Amato R, Mumbengegwi DR, Smith JL, Bennett A, Gosling R, Mourani PM, Calfee CS, Neff NF, Chow ED, Kim PS, Greenhouse B, DeRisi JL, Crawford ED.

Nucleic Acids Res. 2019 May 22. pii: gkz418. doi: 10.1093/nar/gkz418. [Epub ahead of print]

PMID:
31114866
2.

Developmental Heterogeneity of Microglia and Brain Myeloid Cells Revealed by Deep Single-Cell RNA Sequencing.

Li Q, Cheng Z, Zhou L, Darmanis S, Neff NF, Okamoto J, Gulati G, Bennett ML, Sun LO, Clarke LE, Marschallinger J, Yu G, Quake SR, Wyss-Coray T, Barres BA.

Neuron. 2019 Jan 16;101(2):207-223.e10. doi: 10.1016/j.neuron.2018.12.006. Epub 2018 Dec 31.

PMID:
30606613
3.

Complex mammalian-like haematopoietic system found in a colonial chordate.

Rosental B, Kowarsky M, Seita J, Corey DM, Ishizuka KJ, Palmeri KJ, Chen SY, Sinha R, Okamoto J, Mantalas G, Manni L, Raveh T, Clarke DN, Tsai JM, Newman AM, Neff NF, Nolan GP, Quake SR, Weissman IL, Voskoboynik A.

Nature. 2018 Dec;564(7736):425-429. doi: 10.1038/s41586-018-0783-x. Epub 2018 Dec 5.

4.

Defining human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis.

Churko JM, Garg P, Treutlein B, Venkatasubramanian M, Wu H, Lee J, Wessells QN, Chen SY, Chen WY, Chetal K, Mantalas G, Neff N, Jabart E, Sharma A, Nolan GP, Salomonis N, Wu JC.

Nat Commun. 2018 Nov 21;9(1):4906. doi: 10.1038/s41467-018-07333-4.

5.

Identifying deer antler uhrf1 proliferation and s100a10 mineralization genes using comparative RNA-seq.

Ker DFE, Wang D, Sharma R, Zhang B, Passarelli B, Neff N, Li C, Maloney W, Quake S, Yang YP.

Stem Cell Res Ther. 2018 Oct 31;9(1):292. doi: 10.1186/s13287-018-1027-6.

6.

Noninvasive blood tests for fetal development predict gestational age and preterm delivery.

Ngo TTM, Moufarrej MN, Rasmussen MH, Camunas-Soler J, Pan W, Okamoto J, Neff NF, Liu K, Wong RJ, Downes K, Tibshirani R, Shaw GM, Skotte L, Stevenson DK, Biggio JR, Elovitz MA, Melbye M, Quake SR.

Science. 2018 Jun 8;360(6393):1133-1136. doi: 10.1126/science.aar3819.

PMID:
29880692
7.

High-throughput full-length single-cell mRNA-seq of rare cells.

Ooi CC, Mantalas GL, Koh W, Neff NF, Fuchigami T, Wong DJ, Wilson RJ, Park SM, Gambhir SS, Quake SR, Wang SX.

PLoS One. 2017 Nov 29;12(11):e0188510. doi: 10.1371/journal.pone.0188510. eCollection 2017.

8.

Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma.

Darmanis S, Sloan SA, Croote D, Mignardi M, Chernikova S, Samghababi P, Zhang Y, Neff N, Kowarsky M, Caneda C, Li G, Chang SD, Connolly ID, Li Y, Barres BA, Gephart MH, Quake SR.

Cell Rep. 2017 Oct 31;21(5):1399-1410. doi: 10.1016/j.celrep.2017.10.030.

9.

Numerous uncharacterized and highly divergent microbes which colonize humans are revealed by circulating cell-free DNA.

Kowarsky M, Camunas-Soler J, Kertesz M, De Vlaminck I, Koh W, Pan W, Martin L, Neff NF, Okamoto J, Wong RJ, Kharbanda S, El-Sayed Y, Blumenfeld Y, Stevenson DK, Shaw GM, Wolfe ND, Quake SR.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):9623-9628. doi: 10.1073/pnas.1707009114. Epub 2017 Aug 22.

10.

Early somatic mosaicism is a rare cause of long-QT syndrome.

Priest JR, Gawad C, Kahlig KM, Yu JK, O'Hara T, Boyle PM, Rajamani S, Clark MJ, Garcia ST, Ceresnak S, Harris J, Boyle S, Dewey FE, Malloy-Walton L, Dunn K, Grove M, Perez MV, Neff NF, Chen R, Maeda K, Dubin A, Belardinelli L, West J, Antolik C, Macaya D, Quertermous T, Trayanova NA, Quake SR, Ashley EA.

Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11555-11560. Epub 2016 Sep 28.

11.

Cellular Taxonomy of the Mouse Striatum as Revealed by Single-Cell RNA-Seq.

Gokce O, Stanley GM, Treutlein B, Neff NF, Camp JG, Malenka RC, Rothwell PE, Fuccillo MV, Südhof TC, Quake SR.

Cell Rep. 2016 Jul 26;16(4):1126-1137. doi: 10.1016/j.celrep.2016.06.059. Epub 2016 Jul 14.

12.

Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq.

Treutlein B, Lee QY, Camp JG, Mall M, Koh W, Shariati SA, Sim S, Neff NF, Skotheim JM, Wernig M, Quake SR.

Nature. 2016 Jun 16;534(7607):391-5. doi: 10.1038/nature18323. Epub 2016 Jun 8.

13.

Noninvasive monitoring of infection and rejection after lung transplantation.

De Vlaminck I, Martin L, Kertesz M, Patel K, Kowarsky M, Strehl C, Cohen G, Luikart H, Neff NF, Okamoto J, Nicolls MR, Cornfield D, Weill D, Valantine H, Khush KK, Quake SR.

Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):13336-41. doi: 10.1073/pnas.1517494112. Epub 2015 Oct 12.

14.

Circulating cell-free DNA enables noninvasive diagnosis of heart transplant rejection.

De Vlaminck I, Valantine HA, Snyder TM, Strehl C, Cohen G, Luikart H, Neff NF, Okamoto J, Bernstein D, Weisshaar D, Quake SR, Khush KK.

Sci Transl Med. 2014 Jun 18;6(241):241ra77. doi: 10.1126/scitranslmed.3007803.

15.

GM1 ganglioside enhances Ret signaling in striatum.

Newburn EN, Duchemin AM, Neff NH, Hadjiconstantinou M.

J Neurochem. 2014 Aug;130(4):541-54. doi: 10.1111/jnc.12760. Epub 2014 Jun 13.

16.

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq.

Treutlein B, Brownfield DG, Wu AR, Neff NF, Mantalas GL, Espinoza FH, Desai TJ, Krasnow MA, Quake SR.

Nature. 2014 May 15;509(7500):371-5. doi: 10.1038/nature13173. Epub 2014 Apr 13.

17.

Temporal response of the human virome to immunosuppression and antiviral therapy.

De Vlaminck I, Khush KK, Strehl C, Kohli B, Luikart H, Neff NF, Okamoto J, Snyder TM, Cornfield DN, Nicolls MR, Weill D, Bernstein D, Valantine HA, Quake SR.

Cell. 2013 Nov 21;155(5):1178-87. doi: 10.1016/j.cell.2013.10.034.

18.

Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.

Wapinski OL, Vierbuchen T, Qu K, Lee QY, Chanda S, Fuentes DR, Giresi PG, Ng YH, Marro S, Neff NF, Drechsel D, Martynoga B, Castro DS, Webb AE, Südhof TC, Brunet A, Guillemot F, Chang HY, Wernig M.

Cell. 2013 Oct 24;155(3):621-35. doi: 10.1016/j.cell.2013.09.028. Epub 2013 Oct 24.

19.

Quantitative assessment of single-cell RNA-sequencing methods.

Wu AR, Neff NF, Kalisky T, Dalerba P, Treutlein B, Rothenberg ME, Mburu FM, Mantalas GL, Sim S, Clarke MF, Quake SR.

Nat Methods. 2014 Jan;11(1):41-6. doi: 10.1038/nmeth.2694. Epub 2013 Oct 20.

20.

Identification of a colonial chordate histocompatibility gene.

Voskoboynik A, Newman AM, Corey DM, Sahoo D, Pushkarev D, Neff NF, Passarelli B, Koh W, Ishizuka KJ, Palmeri KJ, Dimov IK, Keasar C, Fan HC, Mantalas GL, Sinha R, Penland L, Quake SR, Weissman IL.

Science. 2013 Jul 26;341(6144):384-7. doi: 10.1126/science.1238036.

21.

The genome sequence of the colonial chordate, Botryllus schlosseri.

Voskoboynik A, Neff NF, Sahoo D, Newman AM, Pushkarev D, Koh W, Passarelli B, Fan HC, Mantalas GL, Palmeri KJ, Ishizuka KJ, Gissi C, Griggio F, Ben-Shlomo R, Corey DM, Penland L, White RA 3rd, Weissman IL, Quake SR.

Elife. 2013 Jul 2;2:e00569. doi: 10.7554/eLife.00569.

22.

Nicotine-induced changes of brain β-endorphin.

Gudehithlu KP, Duchemin AM, Tejwani GA, Neff NH, Hadjiconstantinou M.

Neuropeptides. 2012 Jun;46(3):125-31. doi: 10.1016/j.npep.2012.03.001. Epub 2012 Apr 4.

PMID:
22483037
23.

In with the new.

Neff N.

Mark Health Serv. 2012 Winter;32(1):22-7. No abstract available.

PMID:
22458105
24.

CREB involvement in the regulation of striatal prodynorphin by nicotine.

McCarthy MJ, Duchemin AM, Neff NH, Hadjiconstantinou M.

Psychopharmacology (Berl). 2012 May;221(1):143-53. doi: 10.1007/s00213-011-2559-y. Epub 2011 Nov 17.

PMID:
22086359
25.

Single-cell dissection of transcriptional heterogeneity in human colon tumors.

Dalerba P, Kalisky T, Sahoo D, Rajendran PS, Rothenberg ME, Leyrat AA, Sim S, Okamoto J, Johnston DM, Qian D, Zabala M, Bueno J, Neff NF, Wang J, Shelton AA, Visser B, Hisamori S, Shimono Y, van de Wetering M, Clevers H, Clarke MF, Quake SR.

Nat Biotechnol. 2011 Nov 13;29(12):1120-7. doi: 10.1038/nbt.2038.

26.

Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding.

Lu R, Neff NF, Quake SR, Weissman IL.

Nat Biotechnol. 2011 Oct 2;29(10):928-33. doi: 10.1038/nbt.1977.

27.

The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line.

Xu X, Nagarajan H, Lewis NE, Pan S, Cai Z, Liu X, Chen W, Xie M, Wang W, Hammond S, Andersen MR, Neff N, Passarelli B, Koh W, Fan HC, Wang J, Gui Y, Lee KH, Betenbaugh MJ, Quake SR, Famili I, Palsson BO, Wang J.

Nat Biotechnol. 2011 Jul 31;29(8):735-41. doi: 10.1038/nbt.1932.

28.

Preface. Fifty years of Neuropharmacology a tribute to Ermino Costa.

Neff N, Mocchetti I, Guidotti A.

Pharmacol Res. 2011 Oct;64(4):309. doi: 10.1016/j.phrs.2011.05.012. Epub 2011 Jun 29. No abstract available.

PMID:
21722731
29.

The golden years: a tribute to Erminio Costa.

Neff NH, Hadjiconstantinou M.

Pharmacol Res. 2011 Oct;64(4):350-8. doi: 10.1016/j.phrs.2011.05.013. Epub 2011 Jun 16. Review.

PMID:
21708256
30.

Nicotine and endogenous opioids: neurochemical and pharmacological evidence.

Hadjiconstantinou M, Neff NH.

Neuropharmacology. 2011 Jun;60(7-8):1209-20. doi: 10.1016/j.neuropharm.2010.11.010. Epub 2010 Nov 22. Review.

PMID:
21108953
31.

Desensitization of δ-opioid receptors in nucleus accumbens during nicotine withdrawal.

McCarthy MJ, Zhang H, Neff NH, Hadjiconstantinou M.

Psychopharmacology (Berl). 2011 Feb;213(4):735-44. doi: 10.1007/s00213-010-2028-z. Epub 2010 Oct 13.

PMID:
20941594
32.

Entertainment education for breast cancer surgery decisions: a randomized trial among patients with low health literacy.

Jibaja-Weiss ML, Volk RJ, Granchi TS, Neff NE, Robinson EK, Spann SJ, Aoki N, Friedman LC, Beck JR.

Patient Educ Couns. 2011 Jul;84(1):41-8. doi: 10.1016/j.pec.2010.06.009. Epub 2010 Jul 7.

PMID:
20609546
33.

Enhanced dopamine transporter function in striatum during nicotine withdrawal.

Hadjiconstantinou M, Duchemin AM, Zhang H, Neff NH.

Synapse. 2011 Feb;65(2):91-8. doi: 10.1002/syn.20820.

PMID:
20506223
34.

Aromatic L-amino acid decarboxylase phosphorylation and activation by PKGIalpha in vitro.

Duchemin AM, Neff NH, Hadjiconstantinou M.

J Neurochem. 2010 Jul;114(2):542-52. doi: 10.1111/j.1471-4159.2010.06784.x. Epub 2010 Apr 29.

35.

Clinical assessment incorporating a personal genome.

Ashley EA, Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D, Neff NF, Hudgins L, Gong L, Hodges LM, Berlin DS, Thorn CF, Sangkuhl K, Hebert JM, Woon M, Sagreiya H, Whaley R, Knowles JW, Chou MF, Thakuria JV, Rosenbaum AM, Zaranek AW, Church GM, Greely HT, Quake SR, Altman RB.

Lancet. 2010 May 1;375(9725):1525-35. doi: 10.1016/S0140-6736(10)60452-7.

36.

Increased expression of VMAT2 in dopaminergic neurons during nicotine withdrawal.

Duchemin AM, Zhang H, Neff NH, Hadjiconstantinou M.

Neurosci Lett. 2009 Dec 25;467(2):182-6. doi: 10.1016/j.neulet.2009.10.038. Epub 2009 Oct 14.

PMID:
19835933
37.

Nicotine withdrawal and kappa-opioid receptors.

McCarthy MJ, Zhang H, Neff NH, Hadjiconstantinou M.

Psychopharmacology (Berl). 2010 Jun;210(2):221-9. doi: 10.1007/s00213-009-1674-5. Epub 2009 Oct 6.

PMID:
19806344
38.

Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation.

Reddy TE, Pauli F, Sprouse RO, Neff NF, Newberry KM, Garabedian MJ, Myers RM.

Genome Res. 2009 Dec;19(12):2163-71. doi: 10.1101/gr.097022.109. Epub 2009 Oct 2.

39.

Single-molecule sequencing of an individual human genome.

Pushkarev D, Neff NF, Quake SR.

Nat Biotechnol. 2009 Sep;27(9):847-50. doi: 10.1038/nbt.1561. Epub 2009 Aug 10.

40.

Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver.

Brunner AL, Johnson DS, Kim SW, Valouev A, Reddy TE, Neff NF, Anton E, Medina C, Nguyen L, Chiao E, Oyolu CB, Schroth GP, Absher DM, Baker JC, Myers RM.

Genome Res. 2009 Jun;19(6):1044-56. doi: 10.1101/gr.088773.108. Epub 2009 Mar 9.

41.

Enhancing aromatic L-amino acid decarboxylase activity: implications for L-DOPA treatment in Parkinson's disease.

Hadjiconstantinou M, Neff NH.

CNS Neurosci Ther. 2008 Winter;14(4):340-51. doi: 10.1111/j.1755-5949.2008.00058.x. Review.

PMID:
19040557
42.

Acute nicotine changes dynorphin and prodynorphin mRNA in the striatum.

Isola R, Zhang H, Tejwani GA, Neff NH, Hadjiconstantinou M.

Psychopharmacology (Berl). 2009 Jan;201(4):507-16. doi: 10.1007/s00213-008-1315-4. Epub 2008 Sep 21.

PMID:
18807250
43.

Dynorphin and prodynorphin mRNA changes in the striatum during nicotine withdrawal.

Isola R, Zhang H, Tejwani GA, Neff NH, Hadjiconstantinou M.

Synapse. 2008 Jun;62(6):448-55. doi: 10.1002/syn.20515.

PMID:
18361441
44.

Interventions used by physical therapists in home care for people after hip fracture.

Mangione KK, Lopopolo RB, Neff NP, Craik RL, Palombaro KM.

Phys Ther. 2008 Feb;88(2):199-210. Epub 2007 Dec 4.

PMID:
18056752
45.

GM1-induced activation of phosphatidylinositol 3-kinase: involvement of Trk receptors.

Duchemin AM, Ren Q, Neff NH, Hadjiconstantinou M.

J Neurochem. 2008 Mar;104(6):1466-77. Epub 2007 Nov 17.

46.

Preliminary testing of a just-in-time, user-defined values clarification exercise to aid lower literate women in making informed breast cancer treatment decisions.

Jibaja-Weiss ML, Volk RJ, Friedman LC, Granchi TS, Neff NE, Spann SJ, Robinson EK, Aoki N, Robert Beck J.

Health Expect. 2006 Sep;9(3):218-31.

47.

Clozapine modulates aromatic L-amino acid decarboxylase activity in mouse striatum.

Neff NH, Wemlinger TA, Duchemin AM, Hadjiconstantinou M.

J Pharmacol Exp Ther. 2006 May;317(2):480-7. Epub 2006 Jan 13.

PMID:
16415089
48.

GM1 and ERK signaling in the aged brain.

Mo L, Ren Q, Duchemin AM, Neff NH, Hadjiconstantinou M.

Brain Res. 2005 Aug 30;1054(2):125-34.

PMID:
16084500
49.

Enhanced dopamine uptake in the striatum following repeated restraint stress.

Copeland BJ, Neff NH, Hadjiconstantinou M.

Synapse. 2005 Sep 1;57(3):167-74.

PMID:
15945060
50.

Shoulder function and 3-dimensional kinematics in people with shoulder impingement syndrome before and after a 6-week exercise program.

McClure PW, Bialker J, Neff N, Williams G, Karduna A.

Phys Ther. 2004 Sep;84(9):832-48.

PMID:
15330696

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