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Items: 27

1.

DNA barcodes for rapid, whole genome, single-molecule analyses.

Wand NO, Smith DA, Wilkinson AA, Rushton AE, Busby SJW, Styles IB, Neely RK.

Nucleic Acids Res. 2019 Jul 9;47(12):e68. doi: 10.1093/nar/gkz212.

2.

A general strategy for direct, enzyme-catalyzed conjugation of functional compounds to DNA.

Deen J, Wang S, Van Snick S, Leen V, Janssen K, Hofkens J, Neely RK.

Nucleic Acids Res. 2018 Jun 20;46(11):e64. doi: 10.1093/nar/gky184.

3.

Methyltransferase-directed covalent coupling of fluorophores to DNA.

Lauer MH, Vranken C, Deen J, Frederickx W, Vanderlinden W, Wand N, Leen V, Gehlen MH, Hofkens J, Neely RK.

Chem Sci. 2017 May 1;8(5):3804-3811. doi: 10.1039/c6sc04229e. Epub 2017 Mar 14.

4.

Methyltransferase-Directed Labeling of Biomolecules and its Applications.

Deen J, Vranken C, Leen V, Neely RK, Janssen KPF, Hofkens J.

Angew Chem Int Ed Engl. 2017 May 2;56(19):5182-5200. doi: 10.1002/anie.201608625. Epub 2017 Apr 10. Review.

5.

Live-imaging in the CNS: New insights on oligodendrocytes, myelination, and their responses to inflammation.

Rassul SM, Neely RK, Fulton D.

Neuropharmacology. 2016 Nov;110(Pt B):594-604. doi: 10.1016/j.neuropharm.2015.09.011. Epub 2015 Sep 25. Review.

PMID:
26407765
6.

Biologically controlled synthesis and assembly of magnetite nanoparticles.

Bennet M, Bertinetti L, Neely RK, Schertel A, Körnig A, Flors C, Müller FD, Schüler D, Klumpp S, Faivre D.

Faraday Discuss. 2015;181:71-83. doi: 10.1039/c4fd00240g.

7.

2-Aminopurine as a fluorescent probe of DNA conformation and the DNA-enzyme interface.

Jones AC, Neely RK.

Q Rev Biophys. 2015 May;48(2):244-79. doi: 10.1017/S0033583514000158. Epub 2015 Apr 17. Review.

PMID:
25881643
8.

Combing of genomic DNA from droplets containing picograms of material.

Deen J, Sempels W, De Dier R, Vermant J, Dedecker P, Hofkens J, Neely RK.

ACS Nano. 2015 Jan 27;9(1):809-16. doi: 10.1021/nn5063497. Epub 2015 Jan 8.

9.

Priming in the microbial landscape: periphytic algal stimulation of litter-associated microbial decomposers.

Kuehn KA, Francoeur SN, Findlay RH, Neely RK.

Ecology. 2014 Mar;95(3):749-62.

PMID:
24804458
10.

Super-resolution optical DNA Mapping via DNA methyltransferase-directed click chemistry.

Vranken C, Deen J, Dirix L, Stakenborg T, Dehaen W, Leen V, Hofkens J, Neely RK.

Nucleic Acids Res. 2014 Apr;42(7):e50. doi: 10.1093/nar/gkt1406. Epub 2014 Jan 21.

11.

Single molecule methods for the study of catalysis: from enzymes to heterogeneous catalysts.

Janssen KP, De Cremer G, Neely RK, Kubarev AV, Van Loon J, Martens JA, De Vos DE, Roeffaers MB, Hofkens J.

Chem Soc Rev. 2014 Feb 21;43(4):990-1006. doi: 10.1039/c3cs60245a. Review.

PMID:
24085063
12.

Enzyme-promoted base flipping controls DNA methylation fidelity.

Matje DM, Zhou H, Smith DA, Neely RK, Dryden DT, Jones AC, Dahlquist FW, Reich NO.

Biochemistry. 2013 Mar 12;52(10):1677-85. doi: 10.1021/bi3012912. Epub 2013 Feb 27.

PMID:
23409782
13.

Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy.

Dedecker P, Duwé S, Neely RK, Zhang J.

J Biomed Opt. 2012 Dec;17(12):126008. doi: 10.1117/1.JBO.17.12.126008.

14.

Use of time-resolved FRET to validate crystal structure of complement regulatory complex between C3b and factor H (N terminus).

Pechtl IC, Neely RK, Dryden DT, Jones AC, Barlow PN.

Protein Sci. 2011 Dec;20(12):2102-12. doi: 10.1002/pro.738.

15.

Optical mapping of DNA: single-molecule-based methods for mapping genomes.

Neely RK, Deen J, Hofkens J.

Biopolymers. 2011 May;95(5):298-311. doi: 10.1002/bip.21579. Epub 2011 Jan 4. Review. Erratum in: Biopolymers. 2011 Sep;95(9):651.

PMID:
21207457
16.

Time-resolved fluorescence studies of nucleotide flipping by restriction enzymes.

Neely RK, Tamulaitis G, Chen K, Kubala M, Siksnys V, Jones AC.

Nucleic Acids Res. 2009 Nov;37(20):6859-70. doi: 10.1093/nar/gkp688. Epub 2009 Sep 8.

17.

The BsaHI restriction-modification system: cloning, sequencing and analysis of conserved motifs.

Neely RK, Roberts RJ.

BMC Mol Biol. 2008 May 14;9:48. doi: 10.1186/1471-2199-9-48.

18.

2-Aminopurine flipped into the active site of the adenine-specific DNA methyltransferase M.TaqI: crystal structures and time-resolved fluorescence.

Lenz T, Bonnist EY, Pljevaljcić G, Neely RK, Dryden DT, Scheidig AJ, Jones AC, Weinhold E.

J Am Chem Soc. 2007 May 16;129(19):6240-8. Epub 2007 Apr 25.

PMID:
17455934
19.

Photophysics and X-ray structure of crystalline 2-aminopurine.

Neely RK, Magennis SW, Parsons S, Jones AC.

Chemphyschem. 2007 May 14;8(7):1095-102.

PMID:
17385756
20.

High-precision FLIM-FRET in fixed and living cells reveals heterogeneity in a simple CFP-YFP fusion protein.

Millington M, Grindlay GJ, Altenbach K, Neely RK, Kolch W, Bencina M, Read ND, Jones AC, Dryden DT, Magennis SW.

Biophys Chem. 2007 May;127(3):155-64. Epub 2007 Feb 1.

PMID:
17336446
22.

Periphytic photosynthetic stimulation of extracellular enzyme activity in aquatic microbial communities associated with decaying typha litter.

Francoeur SN, Schaecher M, Neely RK, Kuehn KA.

Microb Ecol. 2006 Nov;52(4):662-9. Epub 2006 Nov 3.

PMID:
17082997
23.
24.

Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexes.

Neely RK, Daujotyte D, Grazulis S, Magennis SW, Dryden DT, Klimasauskas S, Jones AC.

Nucleic Acids Res. 2005 Dec 9;33(22):6953-60. Print 2005.

25.

New spatially explicit method for detecting extracellular protease activity in biofilms.

Francoeur SN, Wetzel RG, Neely RK.

Appl Environ Microbiol. 2001 Sep;67(9):4329-34.

26.

Assessment and Modification of Flexibility of Cognitive Structures Created in University Courses.

Naveh-Benjamin M, McKeachie WJ, Lin YG, Neely RK.

Contemp Educ Psychol. 1998 Jul;23(3):209-32.

PMID:
9665788
27.

Simultaneous use of (14)C and (3)H to determine autotrophic production and bacterial protein production in periphyton.

Neely RK, Wetzel RG.

Microb Ecol. 1995 Nov;30(3):227-37. doi: 10.1007/BF00171931.

PMID:
24185561

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