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Items: 1 to 50 of 76

1.

Basins of Attraction, Commitment Sets and Phenotypes of Boolean Networks.

Klarner H, Siebert H, Nee S, Heinitz F.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Dec 18. doi: 10.1109/TCBB.2018.2879097. [Epub ahead of print]

PMID:
30575543
2.

Survival and weak chaos.

Nee S.

R Soc Open Sci. 2018 May 16;5(5):172181. doi: 10.1098/rsos.172181. eCollection 2018 May.

3.

The evolutionary ecology of molecular replicators.

Nee S.

R Soc Open Sci. 2016 Aug 3;3(8):160235. eCollection 2016 Aug.

4.

Decomposition of Jones and Mueller matrices in terms of four basic polarization responses.

Nee SM.

J Opt Soc Am A Opt Image Sci Vis. 2014 Nov 1;31(11):2518-28. doi: 10.1364/JOSAA.31.002518.

PMID:
25401365
5.

Controlling for non-independence in comparative analysis of patterns across populations within species.

Stone GN, Nee S, Felsenstein J.

Philos Trans R Soc Lond B Biol Sci. 2011 May 12;366(1569):1410-24. doi: 10.1098/rstb.2010.0311. Review.

6.

Genome-wide association studies in Plasmodium species.

Penman B, Buckee C, Gupta S, Nee S.

BMC Biol. 2010 Jul 13;8:90. doi: 10.1186/1741-7007-8-90.

7.

Optical scattering depolarization in a biomedium with anisotropic biomolecules.

Nee TW, Nee SM, Yang DM, Chiou A.

J Opt Soc Am A Opt Image Sci Vis. 2009 May;26(5):1101-8.

PMID:
19412226
8.
9.

Scattering polarization by anisotropic biomolecules.

Nee TW, Nee SM, Yang DM, Huang YS.

J Opt Soc Am A Opt Image Sci Vis. 2008 May;25(5):1030-8.

PMID:
18451909
10.
11.

Slope distribution of a rough surface measured by transmission scattering and polarization.

Nee SM, Dewees RV, Nee TW, Johnson LF, Moran MB.

Appl Opt. 2000 Apr 1;39(10):1561-9.

PMID:
18345052
12.

Error analysis of null ellipsometry with depolarization.

Nee SM.

Appl Opt. 1999 Sep 1;38(25):5388-98.

PMID:
18324043
13.

Characterization for imperfect polarizers under imperfect conditions.

Nee SM, Yoo C, Cole T, Burge D.

Appl Opt. 1998 Jan 1;37(1):54-64.

PMID:
18268560
14.

The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types.

Recker M, Pybus OG, Nee S, Gupta S.

Proc Natl Acad Sci U S A. 2007 May 1;104(18):7711-6. Epub 2007 Apr 25.

15.
16.

Ecology: paradox of the clumps.

Nee S, Colegrave N.

Nature. 2006 May 25;441(7092):417-8. No abstract available.

PMID:
16724048
17.

Professor John Maynard Smith 1920-2004.

Nee S.

Trends Ecol Evol. 2004 Jul;19(7):345-6. No abstract available. Erratum in: Trends Ecol Evol. 2004 Sep;19(9):463.

PMID:
16701281
18.

Quantifying the roles of immigration and chance in shaping prokaryote community structure.

Sloan WT, Lunn M, Woodcock S, Head IM, Nee S, Curtis TP.

Environ Microbiol. 2006 Apr;8(4):732-40.

PMID:
16584484
19.

The illusion of invariant quantities in life histories.

Nee S, Colegrave N, West SA, Grafen A.

Science. 2005 Aug 19;309(5738):1236-9.

20.

A grid-enabled lightweight computational steering client: a .NET PDA implementation.

Kalawsky RS, Nee SP, Holmes I, Coveney PV.

Philos Trans A Math Phys Eng Sci. 2005 Aug 15;363(1833):1885-94.

PMID:
16099755
21.

The great chain of being.

Nee S.

Nature. 2005 May 26;435(7041):429. No abstract available.

PMID:
15917787
22.

Polarization of transmission scattering simulated by using a multiple-facets model.

Nee SM, Nee TW.

J Opt Soc Am A Opt Image Sci Vis. 2004 Sep;21(9):1635-44.

PMID:
15384429
23.

Extinction, slime, and bottoms.

Nee S.

PLoS Biol. 2004 Aug;2(8):E272. Epub 2004 Aug 17. No abstract available.

24.

More than meets the eye.

Nee S.

Nature. 2004 Jun 24;429(6994):804-5. No abstract available.

PMID:
15215837
25.

Transient cross-reactive immune responses can orchestrate antigenic variation in malaria.

Recker M, Nee S, Bull PC, Kinyanjui S, Marsh K, Newbold C, Gupta S.

Nature. 2004 Jun 3;429(6991):555-8.

PMID:
15175751
26.

Polarization of holographic grating diffraction. II. Experiment.

Nee TW, Nee SM, Kleinschmit MW, Shahriar MS.

J Opt Soc Am A Opt Image Sci Vis. 2004 Apr;21(4):532-9.

PMID:
15078024
27.

Polarization of holographic grating diffraction. I. General theory.

Nee TW, Nee SM.

J Opt Soc Am A Opt Image Sci Vis. 2004 Apr;21(4):523-31.

PMID:
15078023
28.

Ultrafast holographic Stokesmeter for polarization imaging in real time.

Shahriar MS, Shen JT, Tripathi R, Kleinschmit M, Nee TW, Nee SM.

Opt Lett. 2004 Feb 1;29(3):298-300.

PMID:
14759057
29.

Error analysis for Mueller matrix measurement.

Nee SM.

J Opt Soc Am A Opt Image Sci Vis. 2003 Aug;20(8):1651-7.

PMID:
12938923
30.

Imperfect vaccination: some epidemiological and evolutionary consequences.

Gandon S, Mackinnon M, Nee S, Read A.

Proc Biol Sci. 2003 Jun 7;270(1520):1129-36.

31.

Fertility insurance and the sex ratios of malaria and related hemospororin blood parasites.

West SA, Smith TG, Nee S, Read AF.

J Parasitol. 2002 Apr;88(2):258-63.

PMID:
12053995
32.

Biodiversity: thinking big in ecology.

Nee S.

Nature. 2002 May 16;417(6886):229-30. No abstract available.

PMID:
12015579
33.

Inbreeding and parasite sex ratios.

Nee S, West SA, Read AF.

Proc Biol Sci. 2002 Apr 7;269(1492):755-60.

34.

Imperfect vaccines and the evolution of pathogen virulence.

Gandon S, Mackinnon MJ, Nee S, Read AF.

Nature. 2001 Dec 13;414(6865):751-6.

PMID:
11742400
35.

Phylogenetics and speciation.

Barraclough TG, Nee S.

Trends Ecol Evol. 2001 Jul 1;16(7):391-399.

PMID:
11403872
36.

Inferring speciation rates from phylogenies.

Nee S.

Evolution. 2001 Apr;55(4):661-8.

PMID:
11392383
37.

Mutualism, parasitism and competition in the evolution of coviruses.

Nee S.

Philos Trans R Soc Lond B Biol Sci. 2000 Nov 29;355(1403):1607-13. Review.

38.

Depolarization and retardation of a birefringent slab.

Nee SM.

J Opt Soc Am A Opt Image Sci Vis. 2000 Nov;17(11):2067-73.

PMID:
11059604
39.

Extinction and the loss of evolutionary history.

Nee S, May RM.

Science. 1997 Oct 24;278(5338):692-4.

40.
41.

Elucidating the population histories and transmission dynamics of papillomaviruses using phylogenetic trees.

Ong CK, Nee S, Rambaut A, Bernard HU, Harvey PH.

J Mol Evol. 1997 Feb;44(2):199-206.

PMID:
9069180
42.

Bi-De: an application for simulating phylogenetic processes.

Rambaut A, Grassly NC, Nee S, Harvey PH.

Comput Appl Biosci. 1996 Dec;12(6):469-71.

PMID:
9021264
43.

Inferring the population history of an epidemic from a phylogenetic tree.

Ong CK, Nee S, Rambaut A, Harvey PH.

J Theor Biol. 1996 Sep 21;182(2):173-8.

PMID:
8944148
44.

The maintenance of strain structure in populations of recombining infectious agents.

Gupta S, Maiden MC, Feavers IM, Nee S, May RM, Anderson RM.

Nat Med. 1996 Apr;2(4):437-42.

PMID:
8597954
45.

No signs of hidden language in noncoding DNA.

Bonhoeffer S, Herz AV, Boerlijst MC, Nee S, Nowak MA, May RM.

Phys Rev Lett. 1996 Mar 11;76(11):1977. No abstract available.

PMID:
10060572
46.

Explaining "linguistic features" of noncoding DNA.

Bonhoeffer S, Herz AV, Boerlijst MC, Nee S, Nowak MA, May RM.

Science. 1996 Jan 5;271(5245):14b-5b. No abstract available.

PMID:
17798153
47.

Explaining "linguistic features" of noncoding DNA.

Bonhoeffer S, Herz AV, Boerlijst MC, Nee S, Nowak MA, May RM.

Science. 1996 Jan 5;271(5245):14-5. No abstract available.

PMID:
8539587
48.

Revealing the history of infectious disease epidemics through phylogenetic trees.

Holmes EC, Nee S, Rambaut A, Garnett GP, Harvey PH.

Philos Trans R Soc Lond B Biol Sci. 1995 Jul 29;349(1327):33-40.

PMID:
8748017
49.

Inferring population history from molecular phylogenies.

Nee S, Holmes EC, Rambaut A, Harvey PH.

Philos Trans R Soc Lond B Biol Sci. 1995 Jul 29;349(1327):25-31.

PMID:
8748016
50.

Sex allocation and population structure in malaria and related parasitic protozoa.

Read AF, Anwar M, Shutler D, Nee S.

Proc Biol Sci. 1995 Jun 22;260(1359):359-63.

PMID:
7630901

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