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Items: 1 to 50 of 250

1.

Self-standing Electrochemical Set-up to Enrich Anode-respiring Bacteria On-site.

Okamoto A, Rowe A, Deng X, Nealson KH.

J Vis Exp. 2018 Jul 24;(137). doi: 10.3791/57632.

PMID:
30102275
2.

Comparative metatranscriptomics reveals extracellular electron transfer pathways conferring microbial adaptivity to surface redox potential changes.

Ishii S, Suzuki S, Tenney A, Nealson KH, Bretschger O.

ISME J. 2018 Jul 26. doi: 10.1038/s41396-018-0238-2. [Epub ahead of print]

PMID:
30050163
3.

Variation in electrode redox potential selects for different microorganisms under cathodic current flow from electrodes in marine sediments.

Lam BR, Rowe AR, Nealson KH.

Environ Microbiol. 2018 May 22. doi: 10.1111/1462-2920.14275. [Epub ahead of print]

PMID:
29786168
4.

Thioclava electrotropha sp. nov., a versatile electrode and sulfur-oxidizing bacterium from marine sediments.

Chang R, Bird L, Barr C, Osburn M, Wilbanks E, Nealson K, Rowe A.

Int J Syst Evol Microbiol. 2018 May;68(5):1652-1658. doi: 10.1099/ijsem.0.002723. Epub 2018 Mar 23.

PMID:
29570444
5.

Tracking Electron Uptake from a Cathode into Shewanella Cells: Implications for Energy Acquisition from Solid-Substrate Electron Donors.

Rowe AR, Rajeev P, Jain A, Pirbadian S, Okamoto A, Gralnick JA, El-Naggar MY, Nealson KH.

MBio. 2018 Feb 27;9(1). pii: e02203-17. doi: 10.1128/mBio.02203-17.

6.

Multi-heme cytochromes provide a pathway for survival in energy-limited environments.

Deng X, Dohmae N, Nealson KH, Hashimoto K, Okamoto A.

Sci Adv. 2018 Feb 16;4(2):eaao5682. doi: 10.1126/sciadv.aao5682. eCollection 2018 Feb.

7.

Changes in Microbial Energy Metabolism Measured by Nanocalorimetry during Growth Phase Transitions.

Robador A, LaRowe DE, Finkel SE, Amend JP, Nealson KH.

Front Microbiol. 2018 Feb 1;9:109. doi: 10.3389/fmicb.2018.00109. eCollection 2018.

8.

Genome Sequence of Hydrogenovibrio sp. Strain SC-1, a Chemolithoautotrophic Sulfur and Iron Oxidizer.

Neely C, Bou Khalil C, Cervantes A, Diaz R, Escobar A, Ho K, Hoefler S, Smith HH, Abuyen K, Savalia P, Nealson KH, Emerson D, Tully B, Barco RA, Amend J.

Genome Announc. 2018 Feb 1;6(5). pii: e01581-17. doi: 10.1128/genomeA.01581-17.

9.

Redox Sensing within the Genus Shewanella.

Harris HW, Sánchez-Andrea I, McLean JS, Salas EC, Tran W, El-Naggar MY, Nealson KH.

Front Microbiol. 2018 Jan 25;8:2568. doi: 10.3389/fmicb.2017.02568. eCollection 2017.

10.

Quantifying Microorganisms at Low Concentrations Using Digital Holographic Microscopy (DHM).

Bedrossian M, Barr C, Lindensmith CA, Nealson K, Nadeau JL.

J Vis Exp. 2017 Nov 1;(129). doi: 10.3791/56343.

PMID:
29155763
11.

A metabolic-activity-detecting approach to life detection: Restoring a chemostat from stop-feeding using a rapid bioactivity assay.

Li SL, Bai MD, Hsiao CJ, Cheng SS, Nealson KH.

Bioelectrochemistry. 2017 Dec;118:147-153. doi: 10.1016/j.bioelechem.2017.08.001. Epub 2017 Aug 9.

PMID:
28822912
12.

Bioelectricity (electromicrobiology) and sustainability.

Nealson KH.

Microb Biotechnol. 2017 Sep;10(5):1114-1119. doi: 10.1111/1751-7915.12834. Epub 2017 Aug 14.

13.

Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars.

Suzuki S, Ishii S, Hoshino T, Rietze A, Tenney A, Morrill PL, Inagaki F, Kuenen JG, Nealson KH.

ISME J. 2017 Nov;11(11):2584-2598. doi: 10.1038/ismej.2017.111. Epub 2017 Jul 21.

PMID:
28731475
14.

Population dynamics of electrogenic microbial communities in microbial fuel cells started with three different inoculum sources.

Ishii S, Suzuki S, Yamanaka Y, Wu A, Nealson KH, Bretschger O.

Bioelectrochemistry. 2017 Oct;117:74-82. doi: 10.1016/j.bioelechem.2017.06.003. Epub 2017 Jun 15.

PMID:
28641173
15.

Outer membrane cytochromes/flavin interactions in Shewanella spp.-A molecular perspective.

Babanova S, Matanovic I, Cornejo J, Bretschger O, Nealson K, Atanassov P.

Biointerphases. 2017 May 31;12(2):021004. doi: 10.1116/1.4984007.

16.

In situ electrochemical enrichment and isolation of a magnetite-reducing bacterium from a high pH serpentinizing spring.

Rowe AR, Yoshimura M, LaRowe DE, Bird LJ, Amend JP, Hashimoto K, Nealson KH, Okamoto A.

Environ Microbiol. 2017 Jun;19(6):2272-2285. doi: 10.1111/1462-2920.13723. Epub 2017 May 5.

PMID:
28276203
17.

Nanoelectronic Investigation Reveals the Electrochemical Basis of Electrical Conductivity in Shewanella and Geobacter.

Ding M, Shiu HY, Li SL, Lee CK, Wang G, Wu H, Weiss NO, Young TD, Weiss PS, Wong GC, Nealson KH, Huang Y, Duan X.

ACS Nano. 2016 Nov 22;10(11):9919-9926. Epub 2016 Nov 8.

PMID:
27787972
18.

Evolution of Cell Size Homeostasis and Growth Rate Diversity during Initial Surface Colonization of Shewanella oneidensis.

Lee CK, Kim AJ, Santos GS, Lai PY, Lee SY, Qiao DF, Anda J, Young TD, Chen Y, Rowe AR, Nealson KH, Weiss PS, Wong GC.

ACS Nano. 2016 Sep 6. [Epub ahead of print]

PMID:
27571459
19.

Electromicrobiology: realities, grand challenges, goals and predictions.

Nealson KH, Rowe AR.

Microb Biotechnol. 2016 Sep;9(5):595-600. doi: 10.1111/1751-7915.12400. Epub 2016 Aug 10. Review.

20.

Modeling of Sustainable Base Production by Microbial Electrolysis Cell.

Blatter M, Sugnaux M, Comninellis C, Nealson K, Fischer F.

ChemSusChem. 2016 Jul 7;9(13):1570-4. doi: 10.1002/cssc.201600459. Epub 2016 Jun 6.

PMID:
27265318
21.

Nanocalorimetric Characterization of Microbial Activity in Deep Subsurface Oceanic Crustal Fluids.

Robador A, LaRowe DE, Jungbluth SP, Lin HT, Rappé MS, Nealson KH, Amend JP.

Front Microbiol. 2016 Apr 5;7:454. doi: 10.3389/fmicb.2016.00454. eCollection 2016.

22.

Real-Time Manganese Phase Dynamics during Biological and Abiotic Manganese Oxide Reduction.

Johnson JE, Savalia P, Davis R, Kocar BD, Webb SM, Nealson KH, Fischer WW.

Environ Sci Technol. 2016 Apr 19;50(8):4248-58. doi: 10.1021/acs.est.5b04834. Epub 2016 Mar 28.

23.

Functional roles of CymA and NapC in reduction of nitrate and nitrite by Shewanella putrefaciens W3-18-1.

Wei H, Dai J, Xia M, Romine MF, Shi L, Beliav A, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J, Qiu D.

Microbiology. 2016 Jun;162(6):930-41. doi: 10.1099/mic.0.000285. Epub 2016 Mar 23.

PMID:
27010745
24.

Geochemistry and Mixing Drive the Spatial Distribution of Free-Living Archaea and Bacteria in Yellowstone Lake.

Kan J, Clingenpeel S, Dow CL, McDermott TR, Macur RE, Inskeep WP, Nealson KH.

Front Microbiol. 2016 Feb 29;7:210. doi: 10.3389/fmicb.2016.00210. eCollection 2016.

25.
26.

Species-dependent hydrodynamics of flagellum-tethered bacteria in early biofilm development.

Bennett RR, Lee CK, De Anda J, Nealson KH, Yildiz FH, O'Toole GA, Wong GC, Golestanian R.

J R Soc Interface. 2016 Feb;13(115):20150966. doi: 10.1098/rsif.2015.0966.

27.

Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function.

Inskeep WP, Jay ZJ, Macur RE, Clingenpeel S, Tenney A, Lovalvo D, Beam JP, Kozubal MA, Shanks WC, Morgan LA, Kan J, Gorby Y, Yooseph S, Nealson K.

Front Microbiol. 2015 Oct 26;6:1044. doi: 10.3389/fmicb.2015.01044. eCollection 2015.

28.

Microbial metabolic networks in a complex electrogenic biofilm recovered from a stimulus-induced metatranscriptomics approach.

Ishii S, Suzuki S, Tenney A, Norden-Krichmar TM, Nealson KH, Bretschger O.

Sci Rep. 2015 Oct 7;5:14840. doi: 10.1038/srep14840.

29.

Ignimbrite textural properties as determinants of endolithic colonization patterns from hyper-arid Atacama Desert.

Cámara B, Suzuki S, Nealson KH, Wierzchos J, Ascaso C, Artieda O, de los Ríos A.

Int Microbiol. 2014 Dec;17(4):235-47. doi: 10.2436/20.1501.01.226.

30.

Enriching distinctive microbial communities from marine sediments via an electrochemical-sulfide-oxidizing process on carbon electrodes.

Li SL, Nealson KH.

Front Microbiol. 2015 Feb 17;6:111. doi: 10.3389/fmicb.2015.00111. eCollection 2015.

31.

Ex-phot: a new take on primitive utilization of solar energy.

Nealson KH.

Environ Microbiol Rep. 2015 Feb;7(1):33-5. doi: 10.1111/1758-2229.12256. No abstract available.

PMID:
25721600
32.

Marine sediments microbes capable of electrode oxidation as a surrogate for lithotrophic insoluble substrate metabolism.

Rowe AR, Chellamuthu P, Lam B, Okamoto A, Nealson KH.

Front Microbiol. 2015 Jan 14;5:784. doi: 10.3389/fmicb.2014.00784. eCollection 2014.

33.

Woody Hastings: 65 years of fun.

Greenberg EP, Nealson KH, Johnson CH.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):14964-5. doi: 10.1073/pnas.1415972111. Epub 2014 Sep 30. No abstract available.

34.

Flavin redox bifurcation as a mechanism for controlling the direction of electron flow during extracellular electron transfer.

Okamoto A, Hashimoto K, Nealson KH.

Angew Chem Int Ed Engl. 2014 Oct 6;53(41):10988-91. doi: 10.1002/anie.201407004. Epub 2014 Aug 26.

PMID:
25156475
35.

Cell-secreted flavins bound to membrane cytochromes dictate electron transfer reactions to surfaces with diverse charge and pH.

Okamoto A, Kalathil S, Deng X, Hashimoto K, Nakamura R, Nealson KH.

Sci Rep. 2014 Jul 11;4:5628. doi: 10.1038/srep05628.

36.

Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site.

Suzuki S, Kuenen JG, Schipper K, van der Velde S, Ishii S, Wu A, Sorokin DY, Tenney A, Meng X, Morrill PL, Kamagata Y, Muyzer G, Nealson KH.

Nat Commun. 2014 May 21;5:3900. doi: 10.1038/ncomms4900.

37.

An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome.

Edlund A, Yang Y, Hall AP, Guo L, Lux R, He X, Nelson KE, Nealson KH, Yooseph S, Shi W, McLean JS.

Microbiome. 2013 Oct 2;1(1):25. doi: 10.1186/2049-2618-1-25.

38.

Microbial population and functional dynamics associated with surface potential and carbon metabolism.

Ishii S, Suzuki S, Norden-Krichmar TM, Phan T, Wanger G, Nealson KH, Sekiguchi Y, Gorby YA, Bretschger O.

ISME J. 2014 May;8(5):963-78. doi: 10.1038/ismej.2013.217. Epub 2013 Dec 19.

39.

Electricity generation by microbial fuel cell using microorganisms as catalyst in cathode.

Jang JK, Kan J, Bretschger O, Gorby YA, Hsu L, Kim BH, Nealson KH.

J Microbiol Biotechnol. 2013 Dec;23(12):1765-73.

40.

Identifying the microbial communities and operational conditions for optimized wastewater treatment in microbial fuel cells.

Ishii S, Suzuki S, Norden-Krichmar TM, Wu A, Yamanaka Y, Nealson KH, Bretschger O.

Water Res. 2013 Dec 1;47(19):7120-30. doi: 10.1016/j.watres.2013.07.048. Epub 2013 Oct 20.

PMID:
24183402
41.

Yellowstone lake nanoarchaeota.

Clingenpeel S, Kan J, Macur RE, Woyke T, Lovalvo D, Varley J, Inskeep WP, Nealson K, McDermott TR.

Front Microbiol. 2013 Sep 11;4:274. doi: 10.3389/fmicb.2013.00274. eCollection 2013.

42.

Microbial diversity in The Cedars, an ultrabasic, ultrareducing, and low salinity serpentinizing ecosystem.

Suzuki S, Ishii S, Wu A, Cheung A, Tenney A, Wanger G, Kuenen JG, Nealson KH.

Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):15336-41. doi: 10.1073/pnas.1302426110. Epub 2013 Sep 3.

43.

Isotope ratios of H, C, and O in CO2 and H2O of the martian atmosphere.

Webster CR, Mahaffy PR, Flesch GJ, Niles PB, Jones JH, Leshin LA, Atreya SK, Stern JC, Christensen LE, Owen T, Franz H, Pepin RO, Steele A; MSL Science Team, Achilles C, Agard C, Alves Verdasca JA, Anderson R, Anderson R, Archer D, Armiens-Aparicio C, Arvidson R, Atlaskin E, Aubrey A, Baker B, Baker M, Balic-Zunic T, Baratoux D, Baroukh J, Barraclough B, Bean K, Beegle L, Behar A, Bell J, Bender S, Benna M, Bentz J, Berger G, Berger J, Berman D, Bish D, Blake DF, Blanco Avalos JJ, Blaney D, Blank J, Blau H, Bleacher L, Boehm E, Botta O, Böttcher S, Boucher T, Bower H, Boyd N, Boynton B, Breves E, Bridges J, Bridges N, Brinckerhoff W, Brinza D, Bristow T, Brunet C, Brunner A, Brunner W, Buch A, Bullock M, Burmeister S, Cabane M, Calef F, Cameron J, Campbell J, Cantor B, Caplinger M, Caride Rodríguez J, Carmosino M, Carrasco Blázquez I, Charpentier A, Chipera S, Choi D, Clark B, Clegg S, Cleghorn T, Cloutis E, Cody G, Coll P, Conrad P, Coscia D, Cousin A, Cremers D, Crisp J, Cros A, Cucinotta F, d'Uston C, Davis S, Day M, de la Torre Juarez M, DeFlores L, DeLapp D, DeMarines J, DesMarais D, Dietrich W, Dingler R, Donny C, Downs B, Drake D, Dromart G, Dupont A, Duston B, Dworkin J, Dyar MD, Edgar L, Edgett K, Edwards C, Edwards L, Ehlmann B, Ehresmann B, Eigenbrode J, Elliott B, Elliott H, Ewing R, Fabre C, Fairén A, Farley K, Farmer J, Fassett C, Favot L, Fay D, Fedosov F, Feldman J, Feldman S, Fisk M, Fitzgibbon M, Floyd M, Flückiger L, Forni O, Fraeman A, Francis R, François P, Freissinet C, French KL, Frydenvang J, Gaboriaud A, Gailhanou M, Garvin J, Gasnault O, Geffroy C, Gellert R, Genzer M, Glavin D, Godber A, Goesmann F, Goetz W, Golovin D, Gómez Gómez F, Gómez-Elvira J, Gondet B, Gordon S, Gorevan S, Grant J, Griffes J, Grinspoon D, Grotzinger J, Guillemot P, Guo J, Gupta S, Guzewich S, Haberle R, Halleaux D, Hallet B, Hamilton V, Hardgrove C, Harker D, Harpold D, Harri AM, Harshman K, Hassler D, Haukka H, Hayes A, Herkenhoff K, Herrera P, Hettrich S, Heydari E, Hipkin V, Hoehler T, Hollingsworth J, Hudgins J, Huntress W, Hurowitz J, Hviid S, Iagnemma K, Indyk S, Israël G, Jackson R, Jacob S, Jakosky B, Jensen E, Jensen JK, Johnson J, Johnson M, Johnstone S, Jones A, Joseph J, Jun I, Kah L, Kahanpää H, Kahre M, Karpushkina N, Kasprzak W, Kauhanen J, Keely L, Kemppinen O, Keymeulen D, Kim MH, Kinch K, King P, Kirkland L, Kocurek G, Koefoed A, Köhler J, Kortmann O, Kozyrev A, Krezoski J, Krysak D, Kuzmin R, Lacour JL, Lafaille V, Langevin Y, Lanza N, Lasue J, Le Mouélic S, Lee EM, Lee QM, Lees D, Lefavor M, Lemmon M, Lepinette Malvitte A, Léveillé R, Lewin-Carpintier É, Lewis K, Li S, Lipkaman L, Little C, Litvak M, Lorigny E, Lugmair G, Lundberg A, Lyness E, Madsen M, Maki J, Malakhov A, Malespin C, Malin M, Mangold N, Manhes G, Manning H, Marchand G, Marín Jiménez M, Martín García C, Martin D, Martin M, Martínez-Frías J, Martín-Soler J, Martín-Torres FJ, Mauchien P, Maurice S, McAdam A, McCartney E, McConnochie T, McCullough E, McEwan I, McKay C, McLennan S, McNair S, Melikechi N, Meslin PY, Meyer M, Mezzacappa A, Miller H, Miller K, Milliken R, Ming D, Minitti M, Mischna M, Mitrofanov I, Moersch J, Mokrousov M, Molina Jurado A, Moores J, Mora-Sotomayor L, Morookian JM, Morris R, Morrison S, Mueller-Mellin R, Muller JP, Muñoz Caro G, Nachon M, Navarro López S, Navarro-González R, Nealson K, Nefian A, Nelson T, Newcombe M, Newman C, Newsom H, Nikiforov S, Nixon B, Noe Dobrea E, Nolan T, Oehler D, Ollila A, Olson T, de Pablo Hernández MÁ, Paillet A, Pallier E, Palucis M, Parker T, Parot Y, Patel K, Paton M, Paulsen G, Pavlov A, Pavri B, Peinado-González V, Peret L, Perez R, Perrett G, Peterson J, Pilorget C, Pinet P, Pla-García J, Plante I, Poitrasson F, Polkko J, Popa R, Posiolova L, Posner A, Pradler I, Prats B, Prokhorov V, Purdy SW, Raaen E, Radziemski L, Rafkin S, Ramos M, Rampe E, Raulin F, Ravine M, Reitz G, Rennó N, Rice M, Richardson M, Robert F, Robertson K, Rodriguez Manfredi JA, Romeral-Planelló JJ, Rowland S, Rubin D, Saccoccio M, Salamon A, Sandoval J, Sanin A, Sans Fuentes SA, Saper L, Sarrazin P, Sautter V, Savijärvi H, Schieber J, Schmidt M, Schmidt W, Scholes D, Schoppers M, Schröder S, Schwenzer S, Sebastian Martinez E, Sengstacken A, Shterts R, Siebach K, Siili T, Simmonds J, Sirven JB, Slavney S, Sletten R, Smith M, Sobrón Sánchez P, Spanovich N, Spray J, Squyres S, Stack K, Stalport F, Stein T, Stewart N, Stipp SL, Stoiber K, Stolper E, Sucharski B, Sullivan R, Summons R, Sumner D, Sun V, Supulver K, Sutter B, Szopa C, Tan F, Tate C, Teinturier S, ten Kate I, Thomas P, Thompson L, Tokar R, Toplis M, Torres Redondo J, Trainer M, Treiman A, Tretyakov V, Urqui-O'Callaghan R, Van Beek J, Van Beek T, VanBommel S, Vaniman D, Varenikov A, Vasavada A, Vasconcelos P, Vicenzi E, Vostrukhin A, Voytek M, Wadhwa M, Ward J, Weigle E, Wellington D, Westall F, Wiens RC, Wilhelm MB, Williams A, Williams J, Williams R, Williams RB, Wilson M, Wimmer-Schweingruber R, Wolff M, Wong M, Wray J, Wu M, Yana C, Yen A, Yingst A, Zeitlin C, Zimdar R, Zorzano Mier MP.

Science. 2013 Jul 19;341(6143):260-3. doi: 10.1126/science.1237961.

44.

Oxygen consumption rates of bacteria under nutrient-limited conditions.

Riedel TE, Berelson WM, Nealson KH, Finkel SE.

Appl Environ Microbiol. 2013 Aug;79(16):4921-31. doi: 10.1128/AEM.00756-13. Epub 2013 Jun 14.

45.

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum.

McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee-Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, Pevzner PA, Friedman RM, Nealson KH, Venter JC, Lasken RS.

Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):E2390-9. doi: 10.1073/pnas.1219809110. Epub 2013 Jun 10.

46.

Rate enhancement of bacterial extracellular electron transport involves bound flavin semiquinones.

Okamoto A, Hashimoto K, Nealson KH, Nakamura R.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7856-61. doi: 10.1073/pnas.1220823110. Epub 2013 Apr 1.

47.

Integrating niche-based process and spatial process in biogeography of magnetotactic bacteria.

Lin W, Wang Y, Gorby Y, Nealson K, Pan Y.

Sci Rep. 2013;3:1643. doi: 10.1038/srep01643.

48.

Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform.

McLean JS, Lombardo MJ, Ziegler MG, Novotny M, Yee-Greenbaum J, Badger JH, Tesler G, Nurk S, Lesin V, Brami D, Hall AP, Edlund A, Allen LZ, Durkin S, Reed S, Torriani F, Nealson KH, Pevzner PA, Friedman R, Venter JC, Lasken RS.

Genome Res. 2013 May;23(5):867-77. doi: 10.1101/gr.150433.112. Epub 2013 Apr 5.

49.

A novel metatranscriptomic approach to identify gene expression dynamics during extracellular electron transfer.

Ishii S, Suzuki S, Norden-Krichmar TM, Tenney A, Chain PS, Scholz MB, Nealson KH, Bretschger O.

Nat Commun. 2013;4:1601. doi: 10.1038/ncomms2615.

PMID:
23511466
50.

Animals in a bacterial world, a new imperative for the life sciences.

McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-Lošo T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, Mazmanian SK, Metcalf JL, Nealson K, Pierce NE, Rawls JF, Reid A, Ruby EG, Rumpho M, Sanders JG, Tautz D, Wernegreen JJ.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3229-36. doi: 10.1073/pnas.1218525110. Epub 2013 Feb 7. Review.

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