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Items: 8

1.

PROTEOFORMER 2.0: further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms.

Verbruggen S, Ndah E, Van Criekinge W, Gessulat S, Kuster B, Wilhelm M, Van Damme P, Menschaert G.

Mol Cell Proteomics. 2019 Apr 30. pii: mcp.RA118.001218. doi: 10.1074/mcp.RA118.001218. [Epub ahead of print]

2.

REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes.

Ndah E, Jonckheere V, Giess A, Valen E, Menschaert G, Van Damme P.

Nucleic Acids Res. 2017 Nov 16;45(20):e168. doi: 10.1093/nar/gkx758.

3.

Ribosome signatures aid bacterial translation initiation site identification.

Giess A, Jonckheere V, Ndah E, Chyżyńska K, Van Damme P, Valen E.

BMC Biol. 2017 Aug 30;15(1):76. doi: 10.1186/s12915-017-0416-0.

4.

eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs.

Fijalkowska D, Verbruggen S, Ndah E, Jonckheere V, Menschaert G, Van Damme P.

Nucleic Acids Res. 2017 Jul 27;45(13):7997-8013. doi: 10.1093/nar/gkx469.

5.

N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana.

Willems P, Ndah E, Jonckheere V, Stael S, Sticker A, Martens L, Van Breusegem F, Gevaert K, Van Damme P.

Mol Cell Proteomics. 2017 Jun;16(6):1064-1080. doi: 10.1074/mcp.M116.066662. Epub 2017 Apr 21.

6.

Positional proteomics reveals differences in N-terminal proteoform stability.

Gawron D, Ndah E, Gevaert K, Van Damme P.

Mol Syst Biol. 2016 Feb 18;12(2):858. doi: 10.15252/msb.20156662.

7.

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.

Crappé J, Ndah E, Koch A, Steyaert S, Gawron D, De Keulenaer S, De Meester E, De Meyer T, Van Criekinge W, Van Damme P, Menschaert G.

Nucleic Acids Res. 2015 Mar 11;43(5):e29. doi: 10.1093/nar/gku1283. Epub 2014 Dec 15.

8.

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites.

Koch A, Gawron D, Steyaert S, Ndah E, Crappé J, De Keulenaer S, De Meester E, Ma M, Shen B, Gevaert K, Van Criekinge W, Van Damme P, Menschaert G.

Proteomics. 2014 Dec;14(23-24):2688-98. doi: 10.1002/pmic.201400180. Epub 2014 Oct 2.

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